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Search of human proteins with 30409982
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30409982 lysosomal associated transmembrane protein 4 beta
[Homo sapiens]
(317 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30409982 lysosomal associated transmembrane protein 4 beta [H... 647 0.0
gi|7661916 lysosomal protein transmembrane 4 alpha [Homo sapiens] 211 5e-55
gi|5803056 lysosomal multispanning membrane protein 5 [Homo sapi... 55 6e-08
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 39 0.005
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.014
gi|239753399 PREDICTED: hypothetical protein [Homo sapiens] 37 0.018
gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo ... 37 0.018
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 33 0.43
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 32 0.57
gi|66346695 fibrillin 2 precursor [Homo sapiens] 32 0.74
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 31 1.3
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 31 1.3
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 31 1.3
gi|57222570 codanin 1 [Homo sapiens] 31 1.3
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 31 1.3
gi|171906567 peripheral benzodiazepine receptor-associated prote... 31 1.3
gi|171906559 peripheral benzodiazepine receptor-associated prote... 31 1.3
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 1.3
gi|68800005 tetraspanin 4 isoform a [Homo sapiens] 31 1.7
gi|4507543 tetraspanin 4 isoform a [Homo sapiens] 31 1.7
gi|68800018 tetraspanin 4 isoform a [Homo sapiens] 31 1.7
gi|68800024 tetraspanin 4 isoform a [Homo sapiens] 31 1.7
gi|68800011 tetraspanin 4 isoform a [Homo sapiens] 31 1.7
gi|68799997 tetraspanin 4 isoform a [Homo sapiens] 31 1.7
gi|33286446 opioid growth factor receptor [Homo sapiens] 30 2.2
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
>gi|30409982 lysosomal associated transmembrane protein 4 beta [Homo
sapiens]
Length = 317
Score = 647 bits (1668), Expect = 0.0
Identities = 317/317 (100%), Positives = 317/317 (100%)
Query: 1 MTSRTRVTWPSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPERR 60
MTSRTRVTWPSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPERR
Sbjct: 1 MTSRTRVTWPSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPERR 60
Query: 61 RSRQQRRGGLQARRSTLLKTCARARATAPGAMKMVAPWTRFYSNSCCLCCHVRTGTILLG 120
RSRQQRRGGLQARRSTLLKTCARARATAPGAMKMVAPWTRFYSNSCCLCCHVRTGTILLG
Sbjct: 61 RSRQQRRGGLQARRSTLLKTCARARATAPGAMKMVAPWTRFYSNSCCLCCHVRTGTILLG 120
Query: 121 VWYLIINAVVLLILLSALADPDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMA 180
VWYLIINAVVLLILLSALADPDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMA
Sbjct: 121 VWYLIINAVVLLILLSALADPDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMA 180
Query: 181 TYGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSV 240
TYGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSV
Sbjct: 181 TYGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSV 240
Query: 241 NPTCLVLIILLFISIILTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDD 300
NPTCLVLIILLFISIILTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDD
Sbjct: 241 NPTCLVLIILLFISIILTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDD 300
Query: 301 ATVNGAAKEPPPPYVSA 317
ATVNGAAKEPPPPYVSA
Sbjct: 301 ATVNGAAKEPPPPYVSA 317
>gi|7661916 lysosomal protein transmembrane 4 alpha [Homo sapiens]
Length = 233
Score = 211 bits (538), Expect = 5e-55
Identities = 101/229 (44%), Positives = 146/229 (63%), Gaps = 19/229 (8%)
Query: 100 RFYSNSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPD-------QY----NFSS 148
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + P+ QY N+ S
Sbjct: 13 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 72
Query: 149 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNML 208
SE D N C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ L
Sbjct: 73 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
Query: 209 VAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVW 268
VAI+ L Y I+EY+ QLP +FPY+DD+++++ +CL+ I+L+F ++ + FK YLI+CVW
Sbjct: 126 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVW 184
Query: 269 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPYVSA 317
NCY+YIN RN ++ VY + P + V KEPPPPY+ A
Sbjct: 185 NCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYLPA 233
>gi|5803056 lysosomal multispanning membrane protein 5 [Homo
sapiens]
Length = 262
Score = 55.5 bits (132), Expect = 6e-08
Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 60/258 (23%)
Query: 107 CLCCHVRTGTILLGVWYLIINAVVLLILLSALADPDQYNFSSSELGGDFEFMDDANMCIA 166
C C +VR T L ++++I++ V+L I S + + S++G ++ A++ +
Sbjct: 12 CCCFNVRIATTALAIYHVIMS-VLLFIEHSVEVAHGKASCKLSQMG----YLRIADLISS 66
Query: 167 IAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNMLV----------------- 209
+ ++ +I G K R +++PF QI D+ L +L
Sbjct: 67 FLLITMLFIISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAYLKLASR 126
Query: 210 ------------------AITVLIYPNSIQE---YIRQLPPN----FPYRDDVMSVNPTC 244
+++L +S E Y+ N P ++D+
Sbjct: 127 SRASSSKFPLMTLQLLDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPSQEDMPHNQFIK 186
Query: 245 LVLIILLFISIILTFKGYLISCVWNCYRYINGRNSSDVLVYVTSND---TTVLLPPYDDA 301
+++I + +L FK Y+ CVW CYR I NS V N V+LP Y++A
Sbjct: 187 MMIIFSIAFITVLIFKVYMFKCVWRCYRLIKCMNS----VEEKRNSKMLQKVVLPSYEEA 242
Query: 302 TVNGAAKEP-----PPPY 314
++ +K P PPPY
Sbjct: 243 -LSLPSKTPEGGPAPPPY 259
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 39.3 bits (90), Expect = 0.005
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 MTSRTRVTWPSPPRPLPVPAAAAV-AFGAKGTDPAEARSSRGIEEAGPRAHGR 52
+ S T V S P P P P+AAA A GA+G++ + S RG EE G + H R
Sbjct: 16 LISLTLVKLESVPPPPPSPSAAAAGAAGARGSETGDPGSPRGAEEPGKKRHER 68
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.7 bits (86), Expect = 0.014
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 13 PRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPERRRSRQQRRGGLQA 72
PR AAAA A+G + RS+ + G RA G AGR RRR R++ R A
Sbjct: 343 PRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASA 402
Query: 73 RR 74
R
Sbjct: 403 PR 404
>gi|239753399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 37.4 bits (85), Expect = 0.018
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 10 PSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPERRRSRQQRRGG 69
P PR AAA A K + A AR G + G RA G GR P RR + +
Sbjct: 79 PRKPRTGRGGAAATAAVTRKERETAPARDRGGGDGGGARADGLRGRSPRRRPAGRAHARS 138
Query: 70 LQARRSTLLKTCARARATAP 89
L + + K ARA P
Sbjct: 139 LPSAPGSPKKIPTLARAAGP 158
>gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo
sapiens]
Length = 165
Score = 37.4 bits (85), Expect = 0.018
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 10 PSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPERRRSRQQRRGG 69
P PR AAA A K + A AR G + G RA G GR P RR + +
Sbjct: 79 PRKPRTGRGGAAATAAVTRKERETAPARDRGGGDGGGARADGLRGRSPRRRPAGRAHARS 138
Query: 70 LQARRSTLLKTCARARATAP 89
L + + K ARA P
Sbjct: 139 LPSAPGSPKKIPTLARAAGP 158
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 32.7 bits (73), Expect = 0.43
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 10 PSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPR---AHGRAGREPERRRSRQQR 66
P PP LP+PA F K G+EEAGP+ G+ G+ P + + ++++
Sbjct: 608 PPPPPKLPLPA-----FRLKNDSDL---FGLGLEEAGPKESSEEGKEGKTPSKEKKKKKK 659
Query: 67 RGGLQARRSTLLKT 80
+G + ++ K+
Sbjct: 660 KGKEEEEKAAKKKS 673
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 32.3 bits (72), Expect = 0.57
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 11 SPPRPLPVPAAAA---------VAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPE--R 59
SP RP PV AAAA A G + P ++ E+A PRA GR R PE R
Sbjct: 79 SPTRP-PVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPAEQA-PRAKGRPRRSPESHR 136
Query: 60 RRSRQQRR 67
R S +RR
Sbjct: 137 RSSSPERR 144
>gi|66346695 fibrillin 2 precursor [Homo sapiens]
Length = 2912
Score = 32.0 bits (71), Expect = 0.74
Identities = 29/97 (29%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 10 PSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPERRRSRQQRRGG 69
P PPRP P P A A S G R G A RRR +Q G
Sbjct: 35 PKPPRPQPPPQQVR---------SATAGSEGGFLAPEYREEGAAVASRVRRRGQQDVLRG 85
Query: 70 LQARRSTLLKTCARARATAPGAMKMVAPWTRFYSNSC 106
S C T PG + + P R NSC
Sbjct: 86 PNVCGSRFHSYCCPGWKTLPGGNQCIVPICR---NSC 119
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 10 PSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGR---AGREPERRRSRQQR 66
P+PP P+P A A + GA+ RG E PRA R +GR RRR+R+++
Sbjct: 293 PAPPAPVP-STARARSPGAR----------RGARELAPRAGRRRQPSGRTSWRRRARREQ 341
Query: 67 R 67
R
Sbjct: 342 R 342
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 11 SPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEA-GPRAHGRAGREPERRRSRQQRRGG 69
+P P AAAA A A + + SS + + PRA +A P R++ G
Sbjct: 182 TPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPPAGS 241
Query: 70 LQARRSTLLKTCARARATA 88
R+S L + +R R A
Sbjct: 242 RTGRKSHSLDSLSRRREGA 260
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 11 SPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEA-GPRAHGRAGREPERRRSRQQRRGG 69
+P P AAAA A A + + SS + + PRA +A P R++ G
Sbjct: 182 TPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPPAGS 241
Query: 70 LQARRSTLLKTCARARATA 88
R+S L + +R R A
Sbjct: 242 RTGRKSHSLDSLSRRREGA 260
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/65 (30%), Positives = 26/65 (40%)
Query: 5 TRVTWPSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPERRRSRQ 64
+RV PP P P A+A G G P +R +R A A P RR +
Sbjct: 62 SRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGR 121
Query: 65 QRRGG 69
+R G
Sbjct: 122 RRGPG 126
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 31.2 bits (69), Expect = 1.3
Identities = 50/230 (21%), Positives = 75/230 (32%), Gaps = 35/230 (15%)
Query: 10 PSPPRPLPVPAAAAVAFGAKGTDP------AEARSSRGIEEA---GPRAHGRAGREPERR 60
P PP PL A G G P A A+ G EA G R AG +PE R
Sbjct: 83 PPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPGESEAGAGGERERRGAGDQPETR 142
Query: 61 R----------SRQQRRGGLQARRSTLLKTCARARATAPGAMKMVAPWTRFYSNSCCLCC 110
QR G + K C + + Y++ CL
Sbjct: 143 SVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLK 202
Query: 111 HVRTGTILLGVWYLIINAVVLLILLSALADPDQYNFSSSELGGDFEFMDDANMCIAIAIS 170
+ G W + ++ + P Q+ S L ++ M I S
Sbjct: 203 WISE----RGSWTCELCCYRYHVIAIKMKQPCQWQSISITL------VEKVQMIAVILGS 252
Query: 171 LLMILICAMATYGAYKQRAAW----IIPFFCYQIFDFALNMLVAITVLIY 216
L +I + A+ A W I+ CY ++ F LV I ++++
Sbjct: 253 LFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMYGFM--DLVCIGLIVH 300
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 31.2 bits (69), Expect = 1.3
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 32 DPAEARSSRGIEEAGPRAHGRAGREPERRRSR----QQRRGGLQARRSTLL---KTCARA 84
DP E SR + GP+A GR G P R R + R GL+A L + C+R
Sbjct: 1363 DPRE-HCSRLLSNNGPQASGRLG--PTRERGGLPVIEGPRTGLEASGRGRLGPSRRCSRG 1419
Query: 85 RATAPGAMKMVAP 97
RA PG ++P
Sbjct: 1420 RALEPGLASCLSP 1432
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 31.2 bits (69), Expect = 1.3
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 32 DPAEARSSRGIEEAGPRAHGRAGREPERRRSR----QQRRGGLQARRSTLL---KTCARA 84
DP E SR + GP+A GR G P R R + R GL+A L + C+R
Sbjct: 1423 DPRE-HCSRLLSNNGPQASGRLG--PTRERGGLPVIEGPRTGLEASGRGRLGPSRRCSRG 1479
Query: 85 RATAPGAMKMVAP 97
RA PG ++P
Sbjct: 1480 RALEPGLASCLSP 1492
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 11 SPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGP----RAHGRAGREPERRRSRQQR 66
SPP P P + + + PA A S + P R+HGRA R+ + +R
Sbjct: 421 SPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRR 480
Query: 67 RGGLQARRSTLLKTCARARATAP 89
G RS R+R+ P
Sbjct: 481 MG---RSRSPATAKRGRSRSRTP 500
>gi|68800005 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 147 SSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALN 206
S + L F + AN+ I ++ I + GA K+ ++ FF + F L
Sbjct: 40 SFATLSSSFPSLSAANLLIITGAFVMAIGF--VGCLGAIKENKCLLLTFFLLLLLVFLLE 97
Query: 207 MLVAITVLIYPNSIQEYIRQ 226
+AI Y + I Y +Q
Sbjct: 98 ATIAILFFAYTDKIDRYAQQ 117
>gi|4507543 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 147 SSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALN 206
S + L F + AN+ I ++ I + GA K+ ++ FF + F L
Sbjct: 40 SFATLSSSFPSLSAANLLIITGAFVMAIGF--VGCLGAIKENKCLLLTFFLLLLLVFLLE 97
Query: 207 MLVAITVLIYPNSIQEYIRQ 226
+AI Y + I Y +Q
Sbjct: 98 ATIAILFFAYTDKIDRYAQQ 117
>gi|68800018 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 147 SSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALN 206
S + L F + AN+ I ++ I + GA K+ ++ FF + F L
Sbjct: 40 SFATLSSSFPSLSAANLLIITGAFVMAIGF--VGCLGAIKENKCLLLTFFLLLLLVFLLE 97
Query: 207 MLVAITVLIYPNSIQEYIRQ 226
+AI Y + I Y +Q
Sbjct: 98 ATIAILFFAYTDKIDRYAQQ 117
>gi|68800024 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 147 SSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALN 206
S + L F + AN+ I ++ I + GA K+ ++ FF + F L
Sbjct: 40 SFATLSSSFPSLSAANLLIITGAFVMAIGF--VGCLGAIKENKCLLLTFFLLLLLVFLLE 97
Query: 207 MLVAITVLIYPNSIQEYIRQ 226
+AI Y + I Y +Q
Sbjct: 98 ATIAILFFAYTDKIDRYAQQ 117
>gi|68800011 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 147 SSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALN 206
S + L F + AN+ I ++ I + GA K+ ++ FF + F L
Sbjct: 40 SFATLSSSFPSLSAANLLIITGAFVMAIGF--VGCLGAIKENKCLLLTFFLLLLLVFLLE 97
Query: 207 MLVAITVLIYPNSIQEYIRQ 226
+AI Y + I Y +Q
Sbjct: 98 ATIAILFFAYTDKIDRYAQQ 117
>gi|68799997 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 147 SSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALN 206
S + L F + AN+ I ++ I + GA K+ ++ FF + F L
Sbjct: 40 SFATLSSSFPSLSAANLLIITGAFVMAIGF--VGCLGAIKENKCLLLTFFLLLLLVFLLE 97
Query: 207 MLVAITVLIYPNSIQEYIRQ 226
+AI Y + I Y +Q
Sbjct: 98 ATIAILFFAYTDKIDRYAQQ 117
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 30.4 bits (67), Expect = 2.2
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 10 PSPPRPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREP 57
P P P P+ A G G +PAE+ S E GPR G AG EP
Sbjct: 515 PGSPSETPGPSPA----GPAGDEPAESPS----ETPGPRPAGPAGDEP 554
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 30.4 bits (67), Expect = 2.2
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 27 GAKGTDPAEARSSRGIEEAGPRAHGRAGREPERRRSRQQRRGGLQARRSTLLKTCARARA 86
GAK A+S G + A ++HG G ++++R GG ++R T +A
Sbjct: 736 GAKSRGSGGAKSRSGKKAAASKSHGGGG-------AKRRRGGGAKSRSGEKAVTAGGQKA 788
Query: 87 TAPGAMK 93
A G K
Sbjct: 789 AAAGGKK 795
Score = 28.5 bits (62), Expect = 8.2
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 22 AAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAGREPERRRSRQQRRGGLQARRSTLLKTC 81
AA A GA+ E +++ AG ++ G GR+P RR + G + R
Sbjct: 92 AAGAGGAENRGGGEQKAAA----AGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQKSAA 147
Query: 82 ARARATAPGAMKMVA 96
A ++ GA K A
Sbjct: 148 AGSKNRGAGAQKAAA 162
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 17 PVPAAAAVAFGAKGTDPAEARSSRGIEEA-GPRAHGRAGREPERRRSRQQRRGGLQARRS 75
P AAAA A A + + SS + + PRA +A P R++ G R+S
Sbjct: 186 PAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPPAGSRTGRKS 245
Query: 76 TLLKTCARARATA 88
L + +R R A
Sbjct: 246 HSLDSLSRRREGA 258
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 6 RVTWPSPPRPL-PVPAAAAVAFG--AKGTD------PAEARSSRGIEEAGPRAHGRAGRE 56
R+ PSPPRP P+PA+AAV G A+G + P + R S P+ R
Sbjct: 145 RLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAP 204
Query: 57 PERRRSR 63
P R R
Sbjct: 205 PPPERPR 211
Score = 28.9 bits (63), Expect = 6.3
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 19/81 (23%)
Query: 8 TWPSPPRPLPVPAAAA-----VAFGAKGTDPAEARSSRGIEE----AGPRAHGRAGRE-- 56
T P+PP P PAA A A +G PA+ SR E R GR G E
Sbjct: 320 TLPAPPAPTAWPAAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELP 379
Query: 57 ------PERRRSRQQ--RRGG 69
P RR+S Q ++GG
Sbjct: 380 PSGEETPGRRKSPSQSCKKGG 400
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 6 RVTWPSPPRPL-PVPAAAAVAFG--AKGTD------PAEARSSRGIEEAGPRAHGRAGRE 56
R+ PSPPRP P+PA+AAV G A+G + P + R S P+ R
Sbjct: 145 RLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAP 204
Query: 57 PERRRSR 63
P R R
Sbjct: 205 PPPERPR 211
Score = 28.9 bits (63), Expect = 6.3
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 19/81 (23%)
Query: 8 TWPSPPRPLPVPAAAA-----VAFGAKGTDPAEARSSRGIEE----AGPRAHGRAGRE-- 56
T P+PP P PAA A A +G PA+ SR E R GR G E
Sbjct: 320 TLPAPPAPTAWPAAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELP 379
Query: 57 ------PERRRSRQQ--RRGG 69
P RR+S Q ++GG
Sbjct: 380 PSGEETPGRRKSPSQSCKKGG 400
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 6 RVTWPSPPRPL-PVPAAAAVAFG--AKGTD------PAEARSSRGIEEAGPRAHGRAGRE 56
R+ PSPPRP P+PA+AAV G A+G + P + R S P+ R
Sbjct: 145 RLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAP 204
Query: 57 PERRRSR 63
P R R
Sbjct: 205 PPPERPR 211
Score = 28.9 bits (63), Expect = 6.3
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 19/81 (23%)
Query: 8 TWPSPPRPLPVPAAAA-----VAFGAKGTDPAEARSSRGIEE----AGPRAHGRAGRE-- 56
T P+PP P PAA A A +G PA+ SR E R GR G E
Sbjct: 320 TLPAPPAPTAWPAAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELP 379
Query: 57 ------PERRRSRQQ--RRGG 69
P RR+S Q ++GG
Sbjct: 380 PSGEETPGRRKSPSQSCKKGG 400
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,976,924
Number of Sequences: 37866
Number of extensions: 566859
Number of successful extensions: 4231
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 4096
Number of HSP's gapped (non-prelim): 197
length of query: 317
length of database: 18,247,518
effective HSP length: 102
effective length of query: 215
effective length of database: 14,385,186
effective search space: 3092814990
effective search space used: 3092814990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.