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Search of human proteins with 29337281
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo
sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens] 288 8e-79
gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo ... 181 1e-46
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 112 8e-26
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 112 8e-26
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 112 8e-26
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 46 1e-05
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 44 3e-05
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 44 3e-05
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 44 3e-05
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens] 44 5e-05
gi|9966907 ARS component B precursor [Homo sapiens] 38 0.002
gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens] 37 0.003
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens] 37 0.003
gi|30794264 glycosylphosphatidylinositol anchored high density l... 37 0.004
gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Ho... 36 0.010
gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Ho... 36 0.010
gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Ho... 36 0.010
gi|4504033 glycosylphosphatidylinositol anchored molecule like p... 33 0.083
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens] 31 0.24
gi|54312078 netrin G1 isoform 3 [Homo sapiens] 30 0.41
gi|108773804 Fraser syndrome 1 [Homo sapiens] 30 0.54
gi|14149987 WD repeat domain 24 [Homo sapiens] 30 0.70
gi|164698546 LY6/PLAUR domain containing 5 isoform A [Homo sapiens] 30 0.70
gi|164663808 LY6/PLAUR domain containing 5 isoform B [Homo sapiens] 30 0.70
gi|53829381 plasminogen activator, urokinase receptor isoform 3 ... 29 0.92
gi|53829379 plasminogen activator, urokinase receptor isoform 2 ... 29 0.92
gi|4505865 plasminogen activator, urokinase receptor isoform 1 p... 29 0.92
gi|164414437 netrin G1 isoform 2 [Homo sapiens] 29 0.92
gi|164414431 netrin G1 isoform 1 [Homo sapiens] 29 0.92
gi|239745809 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]
Length = 131
Score = 288 bits (737), Expect = 8e-79
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTSAAEAIWCH 60
MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTSAAEAIWCH
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTSAAEAIWCH 60
Query: 61 QCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLGPYVSI 120
QCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLGPYVSI
Sbjct: 61 QCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLGPYVSI 120
Query: 121 ACCQTSLCNHD 131
ACCQTSLCNHD
Sbjct: 121 ACCQTSLCNHD 131
>gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo
sapiens]
Length = 97
Score = 181 bits (460), Expect = 1e-46
Identities = 80/90 (88%), Positives = 86/90 (95%)
Query: 42 MVAYCMTTRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKM 101
++A ++ + +AAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKM
Sbjct: 8 LLAAVLSLQLAAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKM 67
Query: 102 CHIGCPDIPSLGLGPYVSIACCQTSLCNHD 131
CHIGCPDIPSLGLGPYVSIACCQTSLCNHD
Sbjct: 68 CHIGCPDIPSLGLGPYVSIACCQTSLCNHD 97
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 112 bits (280), Expect = 8e-26
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT 51
MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT 51
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 112 bits (280), Expect = 8e-26
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT 51
MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT 51
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
Length = 116
Score = 112 bits (280), Expect = 8e-26
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT 51
MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT 51
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 45.8 bits (107), Expect = 1e-05
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 41 AMVAYCMTTRTSAAEAIWCHQC---TGFGGCSHGSRCLRDSTHCVTT--ATRVLSNTEDL 95
A++A + A A+ C+ C TG C + C + T C TT + ++ +
Sbjct: 7 ALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIVYPFQGD 66
Query: 96 PLVTKMCHIGCPDIPSLGLGPYVSIACCQTSLCNHD 131
VTK C C G+G + ++CC T LCN D
Sbjct: 67 STVTKSCASKCKPSDVDGIGQTLPVSCCNTELCNVD 102
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 44.3 bits (103), Expect = 3e-05
Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 40/129 (31%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTSAAEAIWCH 60
M LL L+L+ + LAQAL CHVC ++C + + C YC+ TR ++ I
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCC-GHEHCESLVECAPTDKYCVITRATSPGGI--- 56
Query: 61 QCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLGPYVSI 120
LV K C CP+ +S+
Sbjct: 57 ------------------------------------LVMKSCSPTCPNSTVSSDSRALSV 80
Query: 121 ACCQTSLCN 129
+CCQ S CN
Sbjct: 81 SCCQGSQCN 89
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 44.3 bits (103), Expect = 3e-05
Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 40/129 (31%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTSAAEAIWCH 60
M LL L+L+ + LAQAL CHVC ++C + + C YC+ TR ++ I
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCC-GHEHCESLVECAPTDKYCVITRATSPGGI--- 56
Query: 61 QCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLGPYVSI 120
LV K C CP+ +S+
Sbjct: 57 ------------------------------------LVMKSCSPTCPNSTVSSDSRALSV 80
Query: 121 ACCQTSLCN 129
+CCQ S CN
Sbjct: 81 SCCQGSQCN 89
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 44.3 bits (103), Expect = 3e-05
Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 40/129 (31%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTSAAEAIWCH 60
M LL L+L+ + LAQAL CHVC ++C + + C YC+ TR ++ I
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCC-GHEHCESLVECAPTDKYCVITRATSPGGI--- 56
Query: 61 QCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLGPYVSI 120
LV K C CP+ +S+
Sbjct: 57 ------------------------------------LVMKSCSPTCPNSTVSSDSRALSV 80
Query: 121 ACCQTSLCN 129
+CCQ S CN
Sbjct: 81 SCCQGSQCN 89
>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
Length = 128
Score = 43.5 bits (101), Expect = 5e-05
Identities = 34/100 (34%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 37 MRCPAMVAYCMTTRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDL- 95
MR ++ + T A + CH CT C H C S C TT T E L
Sbjct: 1 MRTALLLLAALAVATGPALTLRCHVCTSSSNCKHSVVCPASSRFCKTTNT-----VEPLR 55
Query: 96 -PLVTKMCHIGCPDIPSLGLGPYV-----SIACCQTSLCN 129
LV K C C PS L V S CCQ LCN
Sbjct: 56 GNLVKKDCAESC--TPSYTLQGQVSSGTSSTQCCQEDLCN 93
Score = 35.4 bits (80), Expect = 0.013
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT 51
M L L+ + + A L CHVC + NC + + CPA +C TT T
Sbjct: 1 MRTALLLLAALAVATGPALTLRCHVCT-SSSNCKHSVVCPASSRFCKTTNT 50
>gi|9966907 ARS component B precursor [Homo sapiens]
Length = 103
Score = 38.1 bits (87), Expect = 0.002
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 55 EAIWCHQCTG---FGGCSHGSRCLRDSTHCVTTATRVLSNT--EDLPLVTKMCHIGCPDI 109
EA+ C+ C C +RC + T C+TT V + P+VT+ C C
Sbjct: 21 EALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVAT 80
Query: 110 PSLGLGPYVSIACCQTSLCNHD 131
+G I CC LCN +
Sbjct: 81 DPDSIGAAHLIFCCFRDLCNSE 102
>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 36/132 (27%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTSAAEAIW 58
M L ++L L+G+ A +L C C N C P C YC+T SA
Sbjct: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASA----- 55
Query: 59 CHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLG-PY 117
G G + T LS T C CP + +G
Sbjct: 56 -----GIGN--------------LVTFGHSLSKT---------CSPACPIPEGVNVGVAS 87
Query: 118 VSIACCQTSLCN 129
+ I+CCQ+ LCN
Sbjct: 88 MGISCCQSFLCN 99
>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 36/132 (27%)
Query: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTSAAEAIW 58
M L ++L L+G+ A +L C C N C P C YC+T SA
Sbjct: 1 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASA----- 55
Query: 59 CHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLG-PY 117
G G + T LS T C CP + +G
Sbjct: 56 -----GIGN--------------LVTFGHSLSKT---------CSPACPIPEGVNVGVAS 87
Query: 118 VSIACCQTSLCN 129
+ I+CCQ+ LCN
Sbjct: 88 MGISCCQSFLCN 99
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 37.0 bits (84), Expect = 0.004
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 61 QCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKM--CHIGCPDIPSLGLGPYV 118
+C CSHG C H NTE L T C C I G V
Sbjct: 76 RCNLTQNCSHGQTCTTLIAH---------GNTESGLLTTHSTWCTDSCQPITKTVEGTQV 126
Query: 119 SIACCQTSLCN 129
++ CCQ+SLCN
Sbjct: 127 TMTCCQSSLCN 137
>gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 35.8 bits (81), Expect = 0.010
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 51 TSAAEAIWCHQCTGFGGCSH--GSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPD 108
++ A +WC CT SH +C T C + S++ V KMC C
Sbjct: 41 SAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDF 100
Query: 109 IPSLGLGPY-----------VSIACCQTSLCN 129
+ Y V + CC+ LCN
Sbjct: 101 VKRHFFSDYLMGFINSGILKVDVDCCEKDLCN 132
>gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Homo
sapiens]
Length = 140
Score = 35.8 bits (81), Expect = 0.010
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 51 TSAAEAIWCHQCTGFGGCSH--GSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPD 108
++ A +WC CT SH +C T C + S++ V KMC C
Sbjct: 20 SAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDF 79
Query: 109 IPSLGLGPY-----------VSIACCQTSLCN 129
+ Y V + CC+ LCN
Sbjct: 80 VKRHFFSDYLMGFINSGILKVDVDCCEKDLCN 111
>gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 35.8 bits (81), Expect = 0.010
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 51 TSAAEAIWCHQCTGFGGCSH--GSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPD 108
++ A +WC CT SH +C T C + S++ V KMC C
Sbjct: 41 SAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDF 100
Query: 109 IPSLGLGPY-----------VSIACCQTSLCN 129
+ Y V + CC+ LCN
Sbjct: 101 VKRHFFSDYLMGFINSGILKVDVDCCEKDLCN 132
>gi|4504033 glycosylphosphatidylinositol anchored molecule like
protein [Homo sapiens]
Length = 158
Score = 32.7 bits (73), Expect = 0.083
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 4 LLTLILVVLMGLPLAQA-----------LDCHVCAYNGD-NCFNPMRCPAMVAYCMT--T 49
+L L++ M LPL A L CH CA D NC N CP + CMT
Sbjct: 1 MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISI 60
Query: 50 RTSAAEAIWCHQCT 63
R ++ E + CT
Sbjct: 61 RINSRELLVYKNCT 74
>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
Length = 123
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 56 AIWCHQC---TGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSL 112
A+ C+ C C C + C T R + L +++K C + C D
Sbjct: 20 ALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRAVGL---LTVISKGCSLNCVDDSQD 76
Query: 113 GLGPYVSIACCQTSLCN 129
+I CC T LCN
Sbjct: 77 YYVGKKNITCCDTDLCN 93
>gi|54312078 netrin G1 isoform 3 [Homo sapiens]
Length = 438
Score = 30.4 bits (67), Expect = 0.41
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 15 LPLAQALDCHVC------AYNGDNCFNPMRCPAMVAYC--MTTRTSAAEAIWCHQCTGFG 66
+P ++ +VC NG C N +RC AY + + EA C +G G
Sbjct: 355 IPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQG 414
Query: 67 GCSHGSRCLRDSTHCVTTAT 86
HGS L T + TA+
Sbjct: 415 APPHGSPALLLLTTLLGTAS 434
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 30.0 bits (66), Expect = 0.54
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 22 DCHVCAYNGDNCFNPMRCPAMVAYCMTTRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHC 81
DC C+ + D+C C T + WC G G GS CL C
Sbjct: 424 DCLTCSQSPDHC----------DLCQDP-TKLLQNGWCVHSCGLGFYQAGSLCLACQPQC 472
Query: 82 VTTATRVLSNTEDLPLVTKMCHIGCPDIPSLGLGPYV---SIACCQTS 126
T + + ++ PL+ M H C +P+ G G Y S A C S
Sbjct: 473 STCTSGLECSSCQPPLL--MRHGQC--VPTCGDGFYQDRHSCAVCHES 516
>gi|14149987 WD repeat domain 24 [Homo sapiens]
Length = 790
Score = 29.6 bits (65), Expect = 0.70
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 33 CFNPMRCPAMVAYCMTTRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHC 81
C RC +M A C +WC C+ G H + L S+HC
Sbjct: 733 CDRCHRCASMCAVCH--HVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHC 779
>gi|164698546 LY6/PLAUR domain containing 5 isoform A [Homo sapiens]
Length = 251
Score = 29.6 bits (65), Expect = 0.70
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 59 CHQCTGFG------GCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSL 112
C+ C G G S +C +D T C R+ +P+ + CH P +
Sbjct: 135 CYACIGVHQDDCAIGRSRRVQCHQDQTACFQGNGRMTVGNFSVPVYIRTCH--RPSCTTE 192
Query: 113 G-LGPYVSI----ACCQTSLCN 129
G P+ +I +CC+ LCN
Sbjct: 193 GTTSPWTAIDLQGSCCEGYLCN 214
>gi|164663808 LY6/PLAUR domain containing 5 isoform B [Homo sapiens]
Length = 208
Score = 29.6 bits (65), Expect = 0.70
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 59 CHQCTGFG------GCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPDIPSL 112
C+ C G G S +C +D T C R+ +P+ + CH P +
Sbjct: 92 CYACIGVHQDDCAIGRSRRVQCHQDQTACFQGNGRMTVGNFSVPVYIRTCH--RPSCTTE 149
Query: 113 G-LGPYVSI----ACCQTSLCN 129
G P+ +I +CC+ LCN
Sbjct: 150 GTTSPWTAIDLQGSCCEGYLCN 171
>gi|53829381 plasminogen activator, urokinase receptor isoform 3
precursor [Homo sapiens]
Length = 290
Score = 29.3 bits (64), Expect = 0.92
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 49 TRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMC 102
T A+ + C QC G C C C TT R+ E+L LV K C
Sbjct: 15 TCVPASWGLRCMQCKTNGDC-RVEECALGQDLCRTTIVRLWEEGEELELVEKSC 67
Score = 26.2 bits (56), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 3 PLLTLILVVLMGLPLAQALDCHVCAYNGD 31
PLL L+L++ +P + L C C NGD
Sbjct: 5 PLLPLLLLLHTCVPASWGLRCMQCKTNGD 33
>gi|53829379 plasminogen activator, urokinase receptor isoform 2
precursor [Homo sapiens]
Length = 281
Score = 29.3 bits (64), Expect = 0.92
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 49 TRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMC 102
T A+ + C QC G C C C TT R+ E+L LV K C
Sbjct: 15 TCVPASWGLRCMQCKTNGDC-RVEECALGQDLCRTTIVRLWEEGEELELVEKSC 67
Score = 26.2 bits (56), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 3 PLLTLILVVLMGLPLAQALDCHVCAYNGD 31
PLL L+L++ +P + L C C NGD
Sbjct: 5 PLLPLLLLLHTCVPASWGLRCMQCKTNGD 33
>gi|4505865 plasminogen activator, urokinase receptor isoform 1
precursor [Homo sapiens]
Length = 335
Score = 29.3 bits (64), Expect = 0.92
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 49 TRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMC 102
T A+ + C QC G C C C TT R+ E+L LV K C
Sbjct: 15 TCVPASWGLRCMQCKTNGDC-RVEECALGQDLCRTTIVRLWEEGEELELVEKSC 67
Score = 26.2 bits (56), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 3 PLLTLILVVLMGLPLAQALDCHVCAYNGD 31
PLL L+L++ +P + L C C NGD
Sbjct: 5 PLLPLLLLLHTCVPASWGLRCMQCKTNGD 33
>gi|164414437 netrin G1 isoform 2 [Homo sapiens]
Length = 480
Score = 29.3 bits (64), Expect = 0.92
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 29 NGDNCFNPMRCPAMVAYC--MTTRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTAT 86
NG C N +RC AY + + EA C +G G HGS L T + TA+
Sbjct: 417 NGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPHGSPALLLLTTLLGTAS 476
>gi|164414431 netrin G1 isoform 1 [Homo sapiens]
Length = 539
Score = 29.3 bits (64), Expect = 0.92
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 29 NGDNCFNPMRCPAMVAYC--MTTRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTAT 86
NG C N +RC AY + + EA C +G G HGS L T + TA+
Sbjct: 476 NGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPPHGSPALLLLTTLLGTAS 535
>gi|239745809 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 28.9 bits (63), Expect = 1.2
Identities = 28/101 (27%), Positives = 34/101 (33%), Gaps = 25/101 (24%)
Query: 30 GDNCFNPMRCPAMVAYCMTTRTSAAEAIWCHQCTGFGGCSHGSRCLR--DSTHCVTTATR 87
G +C P C + RT+ + CHQ C+ S CL T C TT R
Sbjct: 111 GSSCCQPC-CHPTCYQTICFRTTCCQPTCCHQT-----CNESSYCLPCCRPTCCQTTCYR 164
Query: 88 VLSNTEDLPLVTKMCHIGCPDIPSLGLGPYVSIACCQTSLC 128
T C PS P +CCQ S C
Sbjct: 165 -----------TTCCR------PSCCCSPCCVSSCCQPSCC 188
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.138 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,254,119
Number of Sequences: 37866
Number of extensions: 209033
Number of successful extensions: 806
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 102
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.