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Search of human proteins with 28882043
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28882043 TR4 orphan receptor associated protein TRA16 [Homo
sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28882043 TR4 orphan receptor associated protein TRA16 [Homo s... 287 2e-78
gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens] 30 0.48
gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens] 30 0.48
gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens] 30 0.48
gi|84798622 mannosidase, beta A, lysosomal [Homo sapiens] 30 0.48
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 29 1.1
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 29 1.4
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 29 1.4
gi|218505793 protocadherin 15 isoform CD3-2 precursor [Homo sapi... 29 1.4
gi|218505791 protocadherin 15 isoform CD3-1 precursor [Homo sapi... 29 1.4
gi|218505789 protocadherin 15 isoform CD2-2 precursor [Homo sapi... 29 1.4
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi... 29 1.4
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 29 1.4
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 29 1.4
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 29 1.4
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 29 1.4
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi... 29 1.4
gi|89357932 keratin 5b [Homo sapiens] 27 7.0
gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens] 27 7.0
gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens] 27 7.0
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 26 9.1
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 26 9.1
gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens] 26 9.1
>gi|28882043 TR4 orphan receptor associated protein TRA16 [Homo
sapiens]
Length = 139
Score = 287 bits (734), Expect = 2e-78
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS 60
MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
Sbjct: 1 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS 60
Query: 61 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA 120
QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA
Sbjct: 61 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA 120
Query: 121 TDFFGRVVIYHLRVLGEKV 139
TDFFGRVVIYHLRVLGEKV
Sbjct: 121 TDFFGRVVIYHLRVLGEKV 139
>gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens]
Length = 2725
Score = 30.4 bits (67), Expect = 0.48
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 10 TVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVSQLQIQFQGG 69
TVS+++SVLN TR+F L Q C+N G + V E ++ +++ + Q
Sbjct: 2604 TVSQMTSVLNGRTRRFADIQL--QHGALCFNIRYGTT--VEEEKNHVLEIARQRAVAQAW 2659
Query: 70 FSSRRGCLEGSQGTQA 85
+R EG +G +A
Sbjct: 2660 TKEQRRLQEGEEGIRA 2675
>gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens]
Length = 2731
Score = 30.4 bits (67), Expect = 0.48
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 10 TVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVSQLQIQFQGG 69
TVS+++SVLN TR+F L Q C+N G + V E ++ +++ + Q
Sbjct: 2610 TVSQMTSVLNGRTRRFADIQL--QHGALCFNIRYGTT--VEEEKNHVLEIARQRAVAQAW 2665
Query: 70 FSSRRGCLEGSQGTQA 85
+R EG +G +A
Sbjct: 2666 TKEQRRLQEGEEGIRA 2681
>gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens]
Length = 2732
Score = 30.4 bits (67), Expect = 0.48
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 10 TVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVSQLQIQFQGG 69
TVS+++SVLN TR+F L Q C+N G + V E ++ +++ + Q
Sbjct: 2611 TVSQMTSVLNGRTRRFADIQL--QHGALCFNIRYGTT--VEEEKNHVLEIARQRAVAQAW 2666
Query: 70 FSSRRGCLEGSQGTQA 85
+R EG +G +A
Sbjct: 2667 TKEQRRLQEGEEGIRA 2682
>gi|84798622 mannosidase, beta A, lysosomal [Homo sapiens]
Length = 879
Score = 30.4 bits (67), Expect = 0.48
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 9 ETVSRVSSVLNRNTRQFGKKHLFDQDEETCWN----------SDQGPSQWVTLEFPQLIR 58
ETV+ N N+ FG H +D + CWN S+ G W + F L +
Sbjct: 512 ETVAEAWVSQNPNSNYFGDVHFYDYISD-CWNWKVFPKARFASEYGYQSWPS--FSTLEK 568
Query: 59 VSQLQ-IQFQGGFSSRRGCLEGSQGTQALHKIVDF-YPEDNNSLQTF 103
VS + F FS R EG + F P+ + L+TF
Sbjct: 569 VSSTEDWSFNSKFSLHRQHHEGGNKQMLYQAGLHFKLPQSTDPLRTF 615
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 29.3 bits (64), Expect = 1.1
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 26 GKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVSQLQIQFQGGFSSRRGCLEGSQGTQA 85
G HL ++E ++ PS T F Q QIQ +G FS R C E + G
Sbjct: 7648 GPSHLASEEESQGRSAQPLPST-KTFAF-------QTQIQ-RGRFSVVRQCWEKASGRAL 7698
Query: 86 LHKIVDFYPEDNNSL 100
KI+ ++P+D ++
Sbjct: 7699 AAKIIPYHPKDKTAV 7713
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo
sapiens]
Length = 1955
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 169 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 228
Query: 124 F 124
F
Sbjct: 229 F 229
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo
sapiens]
Length = 1932
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 147 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 206
Query: 124 F 124
F
Sbjct: 207 F 207
>gi|218505793 protocadherin 15 isoform CD3-2 precursor [Homo
sapiens]
Length = 1677
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 169 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 228
Query: 124 F 124
F
Sbjct: 229 F 229
>gi|218505791 protocadherin 15 isoform CD3-1 precursor [Homo
sapiens]
Length = 1682
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 174 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 233
Query: 124 F 124
F
Sbjct: 234 F 234
>gi|218505789 protocadherin 15 isoform CD2-2 precursor [Homo
sapiens]
Length = 1539
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 169 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 228
Query: 124 F 124
F
Sbjct: 229 F 229
>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo
sapiens]
Length = 1790
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 174 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 233
Query: 124 F 124
F
Sbjct: 234 F 234
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo
sapiens]
Length = 1935
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 147 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 206
Query: 124 F 124
F
Sbjct: 207 F 207
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo
sapiens]
Length = 1952
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 169 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 228
Query: 124 F 124
F
Sbjct: 229 F 229
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo
sapiens]
Length = 1886
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 169 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 228
Query: 124 F 124
F
Sbjct: 229 F 229
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo
sapiens]
Length = 1957
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 169 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 228
Query: 124 F 124
F
Sbjct: 229 F 229
>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo
sapiens]
Length = 1962
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 69 GFSSRRGCLEGSQGTQA-LHKIVDFYPEDNNSLQTFPIP----AAEVDRLKVTFEDATDF 123
GFS G + G + ++ + P+D S TF IP V R ++ +ED T +
Sbjct: 174 GFSGDNGATDIDDGPNGQIEYVIQYNPDDPTSNDTFEIPLMLTGNIVLRKRLNYEDKTRY 233
Query: 124 F 124
F
Sbjct: 234 F 234
>gi|89357932 keratin 5b [Homo sapiens]
Length = 520
Score = 26.6 bits (57), Expect = 7.0
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 5/22 (22%)
Query: 67 QGGFSSRR-----GCLEGSQGT 83
+GGFSSR GCLEGS+G+
Sbjct: 33 RGGFSSRSLNSFGGCLEGSRGS 54
>gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]
Length = 691
Score = 26.6 bits (57), Expect = 7.0
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 19 NRNTRQFGKKHLFD-----QDEETCWNSDQGPSQWVTLEFPQLI---RVSQLQIQFQ 67
N N + K LFD E TCWN + +EFP ++ Q+ +FQ
Sbjct: 22 NGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQ 78
>gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens]
Length = 328
Score = 26.6 bits (57), Expect = 7.0
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 19 NRNTRQFGKKHLFD-----QDEETCWNSDQGPSQWVTLEFPQLI---RVSQLQIQFQ 67
N N + K LFD E TCWN + +EFP ++ Q+ +FQ
Sbjct: 22 NGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQ 78
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 26.2 bits (56), Expect = 9.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 27 KKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVSQLQI 64
++H+ D + W + +++V LEF +LI V + I
Sbjct: 40 REHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISI 77
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 26.2 bits (56), Expect = 9.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 27 KKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVSQLQI 64
++H+ D + W + +++V LEF +LI V + I
Sbjct: 40 REHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISI 77
>gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens]
Length = 450
Score = 26.2 bits (56), Expect = 9.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 27 KKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVSQLQI 64
++H+ D + W + +++V LEF +LI V + I
Sbjct: 40 REHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISI 77
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,381,500
Number of Sequences: 37866
Number of extensions: 218849
Number of successful extensions: 385
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 23
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.