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Search of human proteins with 28872732
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo
sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo ... 434 e-122
gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo ... 360 e-100
gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo ... 317 5e-87
gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo ... 315 2e-86
gi|115298645 mitogen-activated protein kinase kinase kinase 14 [... 37 0.013
gi|169208142 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 33 0.14
gi|169217537 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 33 0.18
gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 33 0.18
gi|169215350 PREDICTED: hypothetical protein [Homo sapiens] 33 0.24
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 33 0.24
gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2... 32 0.31
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 32 0.41
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 32 0.53
gi|4758416 golgi-specific brefeldin A resistant guanine nucleoti... 31 0.91
gi|133922582 zinc finger protein 358 [Homo sapiens] 31 0.91
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 30 1.2
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 30 1.2
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 30 1.2
gi|156564386 deltex 2 isoform b [Homo sapiens] 30 1.2
gi|156564384 deltex 2 isoform a [Homo sapiens] 30 1.2
gi|156564382 deltex 2 isoform a [Homo sapiens] 30 1.2
gi|156564380 deltex 2 isoform a [Homo sapiens] 30 1.2
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 30 1.2
gi|150417978 platelet glycoprotein Ib alpha polypeptide precurso... 30 1.5
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 29 2.6
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 29 2.6
gi|60460889 Myb protein P42POP [Homo sapiens] 29 2.6
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 29 2.6
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 29 2.6
gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens] 29 2.6
>gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo
sapiens]
Length = 215
Score = 434 bits (1116), Expect = e-122
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLP 180
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLP
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLP 180
Query: 181 TVDPISSSLTSAPAPMLSAVSCLPIVPALTTVCSA 215
TVDPISSSLTSAPAPMLSAVSCLPIVPALTTVCSA
Sbjct: 181 TVDPISSSLTSAPAPMLSAVSCLPIVPALTTVCSA 215
>gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo
sapiens]
Length = 202
Score = 360 bits (925), Expect = e-100
Identities = 180/198 (90%), Positives = 184/198 (92%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLP 180
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDP +
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQ 180
Query: 181 TVDPISSSLTSAPAPMLS 198
+ D + P P+ S
Sbjct: 181 SSDLPWGNTHYRPEPLSS 198
>gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo
sapiens]
Length = 235
Score = 317 bits (812), Expect = 5e-87
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD 156
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD 156
>gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo
sapiens]
Length = 159
Score = 315 bits (806), Expect = 2e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
>gi|115298645 mitogen-activated protein kinase kinase kinase 14
[Homo sapiens]
Length = 947
Score = 37.0 bits (84), Expect = 0.013
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 69 PCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQG 128
P C P + A+ + +R+E IH S E+ V + Q G ++ P+ + +
Sbjct: 620 PSCAP-LTAQAIQEGLRKEPIHRVSAAELGGKVNRALQQVG----GLKSPWRGEYKEPR- 673
Query: 129 QWHPFTNKPTTFRGL--RPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPIS 186
HP N+ + L +PRE+ AP + AP++ P P+PP+ P++
Sbjct: 674 --HPPPNQANYHQTLHAQPRELSPRAPGPRPAEETTGRAPKLQPPLPPEPPEPNKSPPLT 731
Query: 187 SS 188
S
Sbjct: 732 LS 733
>gi|169208142 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 205
Score = 33.5 bits (75), Expect = 0.14
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 147 EVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPISSSLTSAPAPMLSAVSCLPIV 206
+V+ P P + ++ P + P +PDPP + + DP SS S PAP L A SC+
Sbjct: 73 DVKTPEPGEPGSPLPASPHPPLQPPAFPDPP-IRSPDPAVSSAHSFPAPRL-AWSCVLYS 130
Query: 207 P 207
P
Sbjct: 131 P 131
>gi|169217537 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 205
Score = 33.1 bits (74), Expect = 0.18
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 147 EVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPISSSLTSAPAPMLSAVSCL 203
+V+ P P + ++ P + P +PDPP + + DP SS S PAP L A SC+
Sbjct: 73 DVKTPEPGEPGSPLPASPHPPLQPPAFPDPP-IHSPDPAVSSAHSFPAPRL-AWSCV 127
>gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 347
Score = 33.1 bits (74), Expect = 0.18
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 147 EVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPISSSLTSAPAPMLSAVSCL 203
+V+ P P + ++ P + P +PDPP + + DP SS S PAP L A SC+
Sbjct: 215 DVKTPEPGEPGSPLPASPHPPLQPPAFPDPP-IRSPDPAVSSAHSFPAPRL-AWSCV 269
>gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 32.7 bits (73), Expect = 0.24
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 18/90 (20%)
Query: 135 NKPTTFRGLR---------PREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPI 185
N P T G R PR V P P R+S+ P++ P P LP V P
Sbjct: 475 NSPATVPGARRSPQILLWAPRHVSSPPPRVQPPCRVSSPPPRVQPPCRVSSP-LPRVQPP 533
Query: 186 SSSLTSAPAPML----SAVSCLPIVPALTT 211
+ + PAP+L AVS P PA T
Sbjct: 534 A----ACPAPLLRVQPPAVSSPPACPAPAT 559
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 32.7 bits (73), Expect = 0.24
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 151 PAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPISSSLTSAPAPMLSAVSCLPIVPA 208
P Q+ G ++ PQ LP P PP P + P + SLT P+ V LP P+
Sbjct: 541 PNLKQEEGEKVLPPQPQPPLPPPPPPPPPPQLPPEAESLTPMVMPVSVPVKLLPPKPS 598
>gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2,
8kDa [Homo sapiens]
Length = 99
Score = 32.3 bits (72), Expect = 0.31
Identities = 14/79 (17%), Positives = 38/79 (48%)
Query: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
L+ + + + S+G R+F+E+ ++ + NP + I + P++ A Y G
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
Query: 86 EESIHCKSVEEISTLVQKL 104
++ S ++++ ++ +
Sbjct: 76 NVPLNNFSADQVTRALENV 94
>gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
polymerase [Homo sapiens]
Length = 1327
Score = 32.0 bits (71), Expect = 0.41
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 143 LRPREVQDPAPAQDTGLRLSAVAPQ---ILLP---GWPDPPDLP-TVDPISSSLTSAPAP 195
L P PA T L+ A + LP G DPPD P + DP+ + +
Sbjct: 35 LSPGLAPGTTPASPTASGLAPFASPRHGLALPEGDGSRDPPDRPRSPDPVDGTSCCSTTS 94
Query: 196 MLSAVSCLPIVPALTTVCSA 215
+ V+ P+VPA++T +A
Sbjct: 95 TICTVAAAPVVPAVSTSSAA 114
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 31.6 bits (70), Expect = 0.53
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 131 HPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPISSSLT 190
HP KP + LRP +V P +D L ++ L P P P+ P +L
Sbjct: 259 HPSQPKPKGLQALRPPQV--TPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLP 316
Query: 191 SAPA 194
S PA
Sbjct: 317 SPPA 320
>gi|4758416 golgi-specific brefeldin A resistant guanine nucleotide
exchange factor 1 [Homo sapiens]
Length = 1859
Score = 30.8 bits (68), Expect = 0.91
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 148 VQDPAPAQDTGLR------LSAVAPQILLPGWPDPPDLPT----------VDPISSSLTS 191
+QDP P + G + L++ A PG P PP++P+ P ++S +S
Sbjct: 1722 IQDPMPMEPQGQKPLASAHLTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSS 1781
Query: 192 APAPMLSAVSCLPIVP 207
+P+ S+ S L P
Sbjct: 1782 PGSPVASSPSRLSPTP 1797
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 30.8 bits (68), Expect = 0.91
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 147 EVQDPAPAQ---DTGLRLSAVAPQILLPGWPD-PPDLPTVDPISSSLTSAPAPMLSAVSC 202
E QDP P D + P IL P P P VDPISS LT+ P + ++ +
Sbjct: 81 EPQDPDPMSSSFDLDPDVIGPVPLILDPNSDTLSPGDPKVDPISSGLTATPQVLATSPAV 140
Query: 203 LP 204
LP
Sbjct: 141 LP 142
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 30.4 bits (67), Expect = 1.2
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 131 HPFTNKPTTFRGLRPREV----QDPAPAQD--TGLRLSAVAPQILLPGWPDPPDLPTVDP 184
HP KP + LRP +V +D APA + L+ +P L PP LP P
Sbjct: 268 HPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQS-QAPPTLPAT-P 325
Query: 185 ISSSLT---SAPAPMLSAVSCLPIVPALTTVCS 214
SSSLT + P P+ P P+L T+ S
Sbjct: 326 HSSSLTCQLATPLPLAPPSPSAP--PSLQTLPS 356
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 30.4 bits (67), Expect = 1.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 143 LRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDP 176
L P QDPAP+Q L + L P WP P
Sbjct: 335 LEPAPEQDPAPSQTLELEPAPAPVPSLQPSWPSP 368
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 30.4 bits (67), Expect = 1.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 143 LRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDP 176
L P QDPAP+Q L + L P WP P
Sbjct: 280 LEPAPEQDPAPSQTLELEPAPAPVPSLQPSWPSP 313
>gi|156564386 deltex 2 isoform b [Homo sapiens]
Length = 575
Score = 30.4 bits (67), Expect = 1.2
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 407 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 465
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 466 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 497
>gi|156564384 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 1.2
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 544
>gi|156564382 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 1.2
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 544
>gi|156564380 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 1.2
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 544
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 30.4 bits (67), Expect = 1.2
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 27/110 (24%)
Query: 101 VQKLADQSGLDVIRIRKPFHTDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLR 160
++K +D GL V ++P D+ S+ G + PT + GL GL
Sbjct: 3022 IKKASDVLGLTV---QQPGMMDSSSLHG-----ISLPTAYPGL-------------PGL- 3059
Query: 161 LSAVAPQILLPGWPDPPDLPTVDPISSSLTSAPAPMLSAVSCLPIVPALT 210
P +LLPG P LP S++LT A ML + PAL+
Sbjct: 3060 -----PPVLLPGMNGPSSLPGFPQNSNTLTPPGAGMLGFPTSATSSPALS 3104
>gi|150417978 platelet glycoprotein Ib alpha polypeptide precursor
[Homo sapiens]
Length = 639
Score = 30.0 bits (66), Expect = 1.5
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 145 PREVQDPAPAQDTGLRLSAVAPQILL------PGWPDPPDLPTVDPISSSLTSAPAPMLS 198
P+ +P P+ T + AP + P P+P P P + TS PAP +
Sbjct: 376 PKSTTEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPSPTTPEPTSEPAPSPT 435
Query: 199 AVSCLPIVPALTT 211
PI P + T
Sbjct: 436 TPEPTPI-PTIAT 447
Score = 28.9 bits (63), Expect = 3.5
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 134 TNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPISSSLTSA 192
T PTT P +PAP+ T S AP P P+P +PT+ + L SA
Sbjct: 405 TPSPTT-----PEPTSEPAPSPTTPEPTSEPAPS---PTTPEPTPIPTIATSPTILVSA 455
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 29.3 bits (64), Expect = 2.6
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 130 WHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQ------ILLPGWPDPPDLPTVD 183
W F N+ T+ E Q P P Q T + V P+ PG P+PP D
Sbjct: 30 WLWFNNEDTSHAATTIPEPQGPLPVQPTADTTTHVTPRNGSTEPATAPGSPEPPSELLED 89
Query: 184 ----PISSSLTSAPAPMLSAV 200
P S+ AP ++ V
Sbjct: 90 GQDTPTSAESPDAPEENIAGV 110
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 29.3 bits (64), Expect = 2.6
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 130 WHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQ------ILLPGWPDPPDLPTVD 183
W F N+ T+ E Q P P Q T + V P+ PG P+PP D
Sbjct: 30 WLWFNNEDTSHAATTIPEPQGPLPVQPTADTTTHVTPRNGSTEPATAPGSPEPPSELLED 89
Query: 184 ----PISSSLTSAPAPMLSAV 200
P S+ AP ++ V
Sbjct: 90 GQDTPTSAESPDAPEENIAGV 110
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 29.3 bits (64), Expect = 2.6
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 144 RPREVQDPAPA--QDTGLRLSAVAPQILLPGWPDPPDLPTVDPISSSLTSAPAP 195
RP+E + P P+ Q L A++P P P PP L V P S P P
Sbjct: 196 RPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSPPSPPPPPRP 249
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 29.3 bits (64), Expect = 2.6
Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 12/152 (7%)
Query: 62 VIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHT 121
++ S C P Y A + + +++ ++LA + KP
Sbjct: 2374 ILTPTSSSCSTPMPSQAYSAPAPSANNTASSAFLQLTAEAEELATFNSKTEAGDEKPKLA 2433
Query: 122 DNPSIQ-GQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLP 180
+ PS Q Q +P +P Q P Q T + + LP P PP P
Sbjct: 2434 EAPSAQPNQTQEKQGQP------KPELQQQEQPEQKTNTPQQKLPQLVSLPSLPQPP--P 2485
Query: 181 TVDPISSSL-TSAPAPMLSAVSCLPIVPALTT 211
P L S+P+P S +S LP+ P T+
Sbjct: 2486 QAPPPQCPLPQSSPSP--SQLSHLPLKPLHTS 2515
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 29.3 bits (64), Expect = 2.6
Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 139 TFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVDPISSSLTSAPAPMLS 198
T + +R Q P Q T + PQ LP P P PT P P PML
Sbjct: 931 TVQNMRATPPQPALPPQPTLPPQPVLPPQPTLPPQPVLPPQPTRPP---QPVLPPQPMLP 987
Query: 199 AVSCLPIVPAL 209
LP PAL
Sbjct: 988 PQPVLPPQPAL 998
Score = 27.7 bits (60), Expect = 7.7
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 132 PFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLPT-VDPISS--- 187
P T PT P Q P AQ T L +APQ ++P P PP LP + P S
Sbjct: 713 PSTPMPTGPGQPAPPGQQPPPLAQPTPLP-QVLAPQPVVPLQPVPPHLPPYLAPASQVGA 771
Query: 188 -------SLTSAPAPMLSAV----SCLPIVPALT 210
+ AP L+ V +P+VP +T
Sbjct: 772 PAQLKPLQMPQAPLQPLAQVPPQMPPIPVVPPIT 805
>gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 2.6
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 8/37 (21%)
Query: 32 SVSRDGASSRGAREFVE----REVIDFARRNPGVVIY 64
++SR+GASSR ++F+E +V+D+ P +VIY
Sbjct: 336 NISRNGASSRNLKKFIESLSRNKVLDY----PAIVIY 368
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,912,290
Number of Sequences: 37866
Number of extensions: 446063
Number of successful extensions: 2014
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1968
Number of HSP's gapped (non-prelim): 100
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.