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Search of human proteins with 28416909
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28416909 interleukin 28 receptor, alpha isoform 2 [Homo
sapiens]
(491 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28416909 interleukin 28 receptor, alpha isoform 2 [Homo sapiens] 1025 0.0
gi|25014103 interleukin 28 receptor, alpha isoform 1 [Homo sapiens] 1009 0.0
gi|28416911 interleukin 28 receptor, alpha isoform 3 [Homo sapiens] 470 e-132
gi|31317241 interleukin 22-binding protein isoform 2 [Homo sapiens] 63 7e-10
gi|31317243 interleukin 22-binding protein isoform 3 [Homo sapiens] 55 1e-07
gi|31083156 interleukin 20 receptor, alpha [Homo sapiens] 55 1e-07
gi|16418459 interleukin 22-binding protein isoform 1 [Homo sapiens] 52 9e-07
gi|40255073 interleukin 20 receptor beta precursor [Homo sapiens] 45 1e-04
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 44 3e-04
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s... 44 3e-04
gi|24430215 interleukin 10 receptor, beta precursor [Homo sapiens] 39 0.008
gi|46488932 interferon-alpha receptor 1 precursor [Homo sapiens] 38 0.018
gi|110349792 growth differentiation factor 1 [Homo sapiens] 37 0.041
gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens] 37 0.041
gi|55741677 SET domain containing 1A [Homo sapiens] 37 0.053
gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo... 37 0.053
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 36 0.091
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 36 0.091
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 36 0.091
gi|210032580 SET domain containing 1B [Homo sapiens] 35 0.16
gi|157671951 solute carrier family 4, anion exchanger, member 3 ... 35 0.16
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 35 0.20
gi|38176300 nestin [Homo sapiens] 34 0.26
gi|162287219 prune homolog 2 [Homo sapiens] 34 0.26
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 34 0.26
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 34 0.26
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 34 0.26
gi|13376339 plasticity-related protein 2 [Homo sapiens] 34 0.26
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 34 0.35
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 34 0.35
>gi|28416909 interleukin 28 receptor, alpha isoform 2 [Homo sapiens]
Length = 491
Score = 1025 bits (2650), Expect = 0.0
Identities = 491/491 (100%), Positives = 491/491 (100%)
Query: 1 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ 60
MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
Sbjct: 1 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ 60
Query: 61 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL 120
SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
Sbjct: 61 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL 120
Query: 121 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ 180
FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
Sbjct: 121 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ 180
Query: 181 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL 240
PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
Sbjct: 181 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL 240
Query: 241 VIAAGGVIWKTLMGNPWFQRAKMPRALELTRGVRPTPRVRAPATQQTRWKKDLAEDEEEE 300
VIAAGGVIWKTLMGNPWFQRAKMPRALELTRGVRPTPRVRAPATQQTRWKKDLAEDEEEE
Sbjct: 241 VIAAGGVIWKTLMGNPWFQRAKMPRALELTRGVRPTPRVRAPATQQTRWKKDLAEDEEEE 300
Query: 301 DEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAWDSSDRS 360
DEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAWDSSDRS
Sbjct: 301 DEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAWDSSDRS 360
Query: 361 WASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSGFLEELPEDNLSSWA 420
WASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSGFLEELPEDNLSSWA
Sbjct: 361 WASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSGFLEELPEDNLSSWA 420
Query: 421 TWGTLPPEPNLVPGGPPVSLQTLTFCWESSPEEEEEARESEIEDSDAGSWGAESTQRTED 480
TWGTLPPEPNLVPGGPPVSLQTLTFCWESSPEEEEEARESEIEDSDAGSWGAESTQRTED
Sbjct: 421 TWGTLPPEPNLVPGGPPVSLQTLTFCWESSPEEEEEARESEIEDSDAGSWGAESTQRTED 480
Query: 481 RGRTLGHYMAR 491
RGRTLGHYMAR
Sbjct: 481 RGRTLGHYMAR 491
>gi|25014103 interleukin 28 receptor, alpha isoform 1 [Homo sapiens]
Length = 520
Score = 1009 bits (2610), Expect = 0.0
Identities = 491/520 (94%), Positives = 491/520 (94%), Gaps = 29/520 (5%)
Query: 1 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ 60
MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
Sbjct: 1 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ 60
Query: 61 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL 120
SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
Sbjct: 61 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL 120
Query: 121 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ 180
FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
Sbjct: 121 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ 180
Query: 181 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL 240
PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
Sbjct: 181 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL 240
Query: 241 VIAAGGVIWKTLMGNPWFQRAKMPRAL-----------------------------ELTR 271
VIAAGGVIWKTLMGNPWFQRAKMPRAL ELTR
Sbjct: 241 VIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELTR 300
Query: 272 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS 331
GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS
Sbjct: 301 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS 360
Query: 332 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG 391
EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG
Sbjct: 361 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG 420
Query: 392 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP 451
HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP
Sbjct: 421 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP 480
Query: 452 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR 491
EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR
Sbjct: 481 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR 520
>gi|28416911 interleukin 28 receptor, alpha isoform 3 [Homo sapiens]
Length = 244
Score = 470 bits (1209), Expect = e-132
Identities = 224/227 (98%), Positives = 224/227 (98%)
Query: 1 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ 60
MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
Sbjct: 1 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ 60
Query: 61 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL 120
SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
Sbjct: 61 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL 120
Query: 121 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ 180
FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
Sbjct: 121 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ 180
Query: 181 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANW 227
PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVP W
Sbjct: 181 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPGLFW 227
>gi|31317241 interleukin 22-binding protein isoform 2 [Homo sapiens]
Length = 231
Score = 62.8 bits (151), Expect = 7e-10
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 27 PQNVTLLSQNFSVYLTWLPG---LGNPQDVTYFVAYQSSPTRRRWREVEECAGTKELLCS 83
PQ V S+NF L W PG GN YFV Y+ +R+W+ E+C GT+EL C
Sbjct: 31 PQRVQFQSRNFHNILQWQPGRALTGNSS--VYFVQYKIYG-QRQWKNKEDCWGTQELSCD 87
Query: 84 MMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPVLVLTQ 134
+ + D+ + GRVR S S S W + +E + PPV+ +TQ
Sbjct: 88 LTS-ETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQ 137
>gi|31317243 interleukin 22-binding protein isoform 3 [Homo sapiens]
Length = 130
Score = 55.5 bits (132), Expect = 1e-07
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 27 PQNVTLLSQNFSVYLTWLPG---LGNPQDVTYFVAYQSSPTRRRWREVEECAGTKELLCS 83
PQ V S+NF L W PG GN YFV Y+ +R+W+ E+C GT+EL C
Sbjct: 31 PQRVQFQSRNFHNILQWQPGRALTGNSS--VYFVQYKIYG-QRQWKNKEDCWGTQELSCD 87
Query: 84 MMCLKKQDLYNKFKGRVRTVSPSSKSPW 111
+ + D+ + GRVR S S S W
Sbjct: 88 LTS-ETSDIQEPYYGRVRAASAGSYSEW 114
>gi|31083156 interleukin 20 receptor, alpha [Homo sapiens]
Length = 553
Score = 55.1 bits (131), Expect = 1e-07
Identities = 54/190 (28%), Positives = 75/190 (39%), Gaps = 28/190 (14%)
Query: 9 PLLLCLLQAAPGRP------RLAPPQNVTLLSQNFSVYLTWLPGLG-NPQDVTYFVAYQS 61
PLLL LL A GR L P N+T LS N L W P G VTY V Y
Sbjct: 16 PLLLLLLAAPWGRAVPCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKVTYTVQYFI 75
Query: 62 SPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLF 121
+++W EC C + + D +++ +V+ + + S W ES
Sbjct: 76 YG-QKKWLNKSECRNINRTYCDLSA-ETSDYEHQYYAKVKAIWGTKCSKWAESGRFYPFL 133
Query: 122 EVEPAPPVLVLTQTEEILSANAT---------YQLPPCMPPL--DLKYEVAF-------- 162
E + PP + LT E+ +S T LP M + +LKY V+
Sbjct: 134 ETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRT 193
Query: 163 WKEGAGNKTL 172
W + N TL
Sbjct: 194 WSQCVTNHTL 203
>gi|16418459 interleukin 22-binding protein isoform 1 [Homo sapiens]
Length = 263
Score = 52.4 bits (124), Expect = 9e-07
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 37/142 (26%)
Query: 27 PQNVTLLSQNFSVYLTWLPG---LGNPQDVTYFVAYQ-----------SSPT-------- 64
PQ V S+NF L W PG GN YFV Y+ P+
Sbjct: 31 PQRVQFQSRNFHNILQWQPGRALTGNSS--VYFVQYKIMFSCSMKSSHQKPSGCWQHISC 88
Query: 65 ------------RRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWV 112
+R+W+ E+C GT+EL C + + D+ + GRVR S S S W
Sbjct: 89 NFPGCRTLAKYGQRQWKNKEDCWGTQELSCDLTS-ETSDIQEPYYGRVRAASAGSYSEWS 147
Query: 113 ESEYLDYLFEVEPAPPVLVLTQ 134
+ +E + PPV+ +TQ
Sbjct: 148 MTPRFTPWWETKIDPPVMNITQ 169
>gi|40255073 interleukin 20 receptor beta precursor [Homo sapiens]
Length = 311
Score = 45.4 bits (106), Expect = 1e-04
Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 23/236 (9%)
Query: 24 LAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ----SSPTRRRWREVEECAGTKE 79
L PQN+++LS N L W P + + V Y V YQ S T W C+ T+
Sbjct: 35 LPAPQNLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEG 94
Query: 80 LLCSMM-CLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPVLVLTQTEEI 138
C + + YN RVR S S W L + F +LT+
Sbjct: 95 PECDVTDDITATVPYNL---RVRATLGSQTSAW---SILKHPFNRNST----ILTRPGME 144
Query: 139 LSANATYQLPPCMPPLDLKYE--VAFW-KEGAGNKTLFPVTPHGQPVQI-TLQPAASEHH 194
++ + + L + L ++E VA+W +E + + V G PV + T++P A+ +
Sbjct: 145 ITKDG-FHLVIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAA--Y 201
Query: 195 CLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLLVIAAGGVIWK 250
C+ A+T + ++ +YS FS+ C ++ + + +L+++ +WK
Sbjct: 202 CVKAQT-FVKAIGRYSAFSQTECVEVQGEAIPLVLALFAFVGFMLILVVVPLFVWK 256
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 43.9 bits (102), Expect = 3e-04
Identities = 49/188 (26%), Positives = 72/188 (38%), Gaps = 46/188 (24%)
Query: 328 PGHSEAGGVDSGRPRAPL------VPSEGSSAWDS-SDRSWASTVD------SSWDRAGS 374
P S + GV+ + P + +GS+ W+S S S TV +SW +A S
Sbjct: 331 PSRSTSNGVNGEWGKPPNQHSNSDINGKGSTGWESPSVTSQNPTVQPGGEHMNSWAKAAS 390
Query: 375 SGYLAEKGPGQGPGGDGHQESLPPPEFS-----KDSGFLEE----LPEDNLS----SWAT 421
SG A +G G G H E E + +D G +++ LP ++L S
Sbjct: 391 SGTTASEGSSDGSGN--HNEGSTGREGTGEGRRRDKGIIDQGHIQLPRNDLDPRVLSNTG 448
Query: 422 WGTLPPEPNLVPGGPPVSLQTLTFCWESSPEEEEEARESEIEDSDAGSWGAESTQRTEDR 481
WG P + N WE EE R D+ +WG +TQ +
Sbjct: 449 WGQTPVKQNTA--------------WEF----EESPRSERKNDNGTEAWGCAATQASNSG 490
Query: 482 GRTLGHYM 489
G+ G M
Sbjct: 491 GKNDGSIM 498
>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
sapiens]
Length = 1690
Score = 43.9 bits (102), Expect = 3e-04
Identities = 49/188 (26%), Positives = 72/188 (38%), Gaps = 46/188 (24%)
Query: 328 PGHSEAGGVDSGRPRAPL------VPSEGSSAWDS-SDRSWASTVD------SSWDRAGS 374
P S + GV+ + P + +GS+ W+S S S TV +SW +A S
Sbjct: 331 PSRSTSNGVNGEWGKPPNQHSNSDINGKGSTGWESPSVTSQNPTVQPGGEHMNSWAKAAS 390
Query: 375 SGYLAEKGPGQGPGGDGHQESLPPPEFS-----KDSGFLEE----LPEDNLS----SWAT 421
SG A +G G G H E E + +D G +++ LP ++L S
Sbjct: 391 SGTTASEGSSDGSGN--HNEGSTGREGTGEGRRRDKGIIDQGHIQLPRNDLDPRVLSNTG 448
Query: 422 WGTLPPEPNLVPGGPPVSLQTLTFCWESSPEEEEEARESEIEDSDAGSWGAESTQRTEDR 481
WG P + N WE EE R D+ +WG +TQ +
Sbjct: 449 WGQTPVKQNTA--------------WEF----EESPRSERKNDNGTEAWGCAATQASNSG 490
Query: 482 GRTLGHYM 489
G+ G M
Sbjct: 491 GKNDGSIM 498
>gi|24430215 interleukin 10 receptor, beta precursor [Homo sapiens]
Length = 325
Score = 39.3 bits (90), Expect = 0.008
Identities = 60/252 (23%), Positives = 99/252 (39%), Gaps = 33/252 (13%)
Query: 13 CLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQSSPTRRRWREVE 72
CLL +A G + PP+NV + S NF L W ++T+ Y S + +
Sbjct: 12 CLLVSALGM--VPPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLSYRIFQ-----D 64
Query: 73 ECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEY--LDYLFEVEPAPPVL 130
+C T C L K Y RVR S WV + +D P V
Sbjct: 65 KCMNTTLTECDFSSLSK---YGDHTLRVRAEFADEHSDWVNITFCPVDDTIIGPPGMQVE 121
Query: 131 VLTQT-------EEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTP-HGQPV 182
VL + +I + T+ + Y V +WK G K F +TP + V
Sbjct: 122 VLADSLHMRFLAPKIENEYETWTMKNVYN--SWTYNVQYWKNGTDEK--FQITPQYDFEV 177
Query: 183 QITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLLVI 242
L+P + +C+ R + K ++S+P C E +PS ++ ++++
Sbjct: 178 LRNLEPWTT--YCVQVRG-FLPDRNKAGEWSEPVC------EQTTHDETVPSWMVAVILM 228
Query: 243 AAGGVIWKTLMG 254
A+ ++ L+G
Sbjct: 229 ASVFMVCLALLG 240
>gi|46488932 interferon-alpha receptor 1 precursor [Homo sapiens]
Length = 557
Score = 38.1 bits (87), Expect = 0.018
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 7/159 (4%)
Query: 14 LLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQSSPTRRRWREVEE 73
+L AA G L PQ V + + + L W + +VT+ YQ + W ++
Sbjct: 20 VLSAAAGGKNLKSPQKVEVDIIDDNFILRWNRSDESVGNVTFSFDYQKT-GMDNWIKLSG 78
Query: 74 CAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPVLVLT 133
C C+ L K ++Y + K R+R ++ S W E + + + PP + L
Sbjct: 79 CQNITSTKCNFSSL-KLNVYEEIKLRIRAEKENTSS-WYEVDSFTPFRKAQIGPPEVHLE 136
Query: 134 QTEEI----LSANATYQLPPCMPPLDLKYEVAFWKEGAG 168
++ +S + + L Y + WK +G
Sbjct: 137 AEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSG 175
Score = 38.1 bits (87), Expect = 0.018
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 24 LAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQSSPTRR-------RWREVEECAG 76
L PP+N+ + QN + L W N +T+ V + + +R +W+++ +C
Sbjct: 229 LPPPENIEVSVQNQNYVLKWDYTYAN---MTFQVQWLHAFLKRNPGNHLYKWKQIPDCEN 285
Query: 77 TKELLCSMMCLKKQDLYNK--FKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPVLVLTQ 134
K + C+ Q+++ K + RV+ ++ S W E D + PPV +
Sbjct: 286 VK----TTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRS 341
Query: 135 TEE----ILSANATYQLPPCMPPLDLKYEVAFWK 164
+ + A P + L YE+ FW+
Sbjct: 342 LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWE 375
>gi|110349792 growth differentiation factor 1 [Homo sapiens]
Length = 372
Score = 37.0 bits (84), Expect = 0.041
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 26/137 (18%)
Query: 166 GAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEV--- 222
G + + G P + + +PA++ HC ++ S + ++ +P+ LE+
Sbjct: 96 GVAGNIVRHIPDRGAPTRAS-EPASAAGHCPEWTVVFDLSAVEPAE--RPSRARLELRFA 152
Query: 223 ------PEANWAFLVLPS----------LLILLLVIAAGGVIWKTLMGNPWFQRAKMPRA 266
PE W V + +L+ LV A G + L+G W + A PR+
Sbjct: 153 AAAAAAPEGGWELSVAQAGQGAGADPGPVLLRQLVPALGPPVRAELLGAAWARNASWPRS 212
Query: 267 LELTRGVRPTPRVRAPA 283
L L +RP RAPA
Sbjct: 213 LRLALALRP----RAPA 225
>gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens]
Length = 251
Score = 37.0 bits (84), Expect = 0.041
Identities = 45/180 (25%), Positives = 64/180 (35%), Gaps = 44/180 (24%)
Query: 305 TEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRP---------RAPLVPSEGSSAWD 355
+E G P+ EP + G E + P H+ GG + G+P + PL S G D
Sbjct: 97 SEKGSGDGPWPEPEAAEGDEDK-PTHAGGGGDELGKPDDDKPTEEEKGPLKRSAGDPPED 155
Query: 356 SSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSGFLEELPEDN 415
+ R + D + AE+ ++S FL +
Sbjct: 156 APKRPKEAAPDQEEEAEAERAAEAERAAAAAAA----------TAVDEESPFLVAVEN-- 203
Query: 416 LSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSPEEEEEARESEIEDSDAG-SWGAES 474
G+ P EP LV C P EEEE RE E+ D +A W AE+
Sbjct: 204 -------GSAPSEPGLV-------------CEPPQP-EEEELREEEVADEEASQEWHAEA 242
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 36.6 bits (83), Expect = 0.053
Identities = 48/179 (26%), Positives = 69/179 (38%), Gaps = 29/179 (16%)
Query: 283 ATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAG-GVDSGRP 341
A+Q++ +KD +DEE+E++ED E+ V E G++ ++ S+ DS
Sbjct: 968 ASQESSSEKDEEDDEEDEEDEDREEAVDTTKK-ETEVSDGEDEESDSSSKCSLYADSDGE 1026
Query: 342 RAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGY-------------LAEKGPGQGPG 388
SE SS+ SS S +S+ SS + S A P + P
Sbjct: 1027 NDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPREVPV 1086
Query: 389 GDGHQESLPPPEFSKDSGFLEELPEDNLSSWATWGTL----------PPEPNLVPGGPP 437
+P PE S + LPE S G PPEP P GPP
Sbjct: 1087 PTPAPVEVPVPERVAGSP-VTPLPEQEASPARPAGPTEESPPSAPLRPPEP---PAGPP 1141
Score = 30.4 bits (67), Expect = 3.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 452 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHY 488
EE+E+ E E E + G G + +R E+RG+T G +
Sbjct: 919 EEDEDDPEQEKEAGEPGRPGTKPPKRDEERGKTQGKH 955
>gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo
sapiens]
Length = 674
Score = 36.6 bits (83), Expect = 0.053
Identities = 48/184 (26%), Positives = 68/184 (36%), Gaps = 19/184 (10%)
Query: 297 EEEEDEEDTEDGV------SFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEG 350
EEE+DEE + + P +P +++ PG E + R S+G
Sbjct: 191 EEEDDEEAVKKEAHRTSTSALSPGSKPSTWVS----CPGEEENQATEDKRTER----SKG 242
Query: 351 SSAWDSSDRSWASTVDSSWDRAGSSGY----LAEKGPGQGPGGDGHQESLPPPEFSKDSG 406
+ S RS S S R+G + A K G+G G Q S P S
Sbjct: 243 ARKTSVSPRSSGSDPRSWEYRSGEASEEKEEKAHKETGKGEAAPGPQSSAPAQRPQLKSW 302
Query: 407 FLEELPEDNLSSWATWGTLPP-EPNLVPGGPPVSLQTLTFCWESSPEEEEEARESEIEDS 465
+ + E+ A E P PP S + + + EEE E E EDS
Sbjct: 303 WCQPSDEEEGEVKALGAAEKDGEAECPPCIPPPSAFLKAWVYWPGEDTEEEEDEEEDEDS 362
Query: 466 DAGS 469
D+GS
Sbjct: 363 DSGS 366
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 35.8 bits (81), Expect = 0.091
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 424 TLPPEPNLVP------GGPPVSLQTLTFCWESSPEEEEEARESEIEDSDAGSWGAESTQR 477
TLPP P LVP GGPP + LT +S +EEEE E E E+ + E +
Sbjct: 854 TLPP-PQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEE 912
Query: 478 TED 480
E+
Sbjct: 913 EEE 915
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 35.8 bits (81), Expect = 0.091
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 295 EDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAW 354
EDEEE+DEE+ ++ S GG + + + S GSS+
Sbjct: 97 EDEEEDDEEEEDES---------------------SSSGGGEEESSAESLVGSSGGSSSD 135
Query: 355 DSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG 391
++ S + SS D G G KGP GG G
Sbjct: 136 ETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGG 172
Score = 32.7 bits (73), Expect = 0.77
Identities = 43/167 (25%), Positives = 61/167 (36%), Gaps = 40/167 (23%)
Query: 268 ELTRGVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTE--------------------- 306
EL+R + P P + + R + E+EEEE+EE+ E
Sbjct: 13 ELSR-LSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGG 71
Query: 307 DGVS-------FQPYIEPPSFLG---------QEHQAPGHSEAGGVDSGRPRAPLVPSEG 350
GV +P E S G +E + S GG + + + S G
Sbjct: 72 GGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEESSAESLVGSSGG 131
Query: 351 SSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGP--GQGPGGDGHQES 395
SS+ ++ S + SS D G G KGP QG GG G S
Sbjct: 132 SSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSS 178
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 35.8 bits (81), Expect = 0.091
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 295 EDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAW 354
EDEEE+DEE+ ++ S GG + + + S GSS+
Sbjct: 97 EDEEEDDEEEEDES---------------------SSSGGGEEESSAESLVGSSGGSSSD 135
Query: 355 DSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG 391
++ S + SS D G G KGP GG G
Sbjct: 136 ETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGG 172
Score = 32.7 bits (73), Expect = 0.77
Identities = 43/167 (25%), Positives = 61/167 (36%), Gaps = 40/167 (23%)
Query: 268 ELTRGVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTE--------------------- 306
EL+R + P P + + R + E+EEEE+EE+ E
Sbjct: 13 ELSR-LSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGG 71
Query: 307 DGVS-------FQPYIEPPSFLG---------QEHQAPGHSEAGGVDSGRPRAPLVPSEG 350
GV +P E S G +E + S GG + + + S G
Sbjct: 72 GGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEESSAESLVGSSGG 131
Query: 351 SSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGP--GQGPGGDGHQES 395
SS+ ++ S + SS D G G KGP QG GG G S
Sbjct: 132 SSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSS 178
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 35.0 bits (79), Expect = 0.16
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 18/180 (10%)
Query: 260 RAKMPRALELTRGVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPS 319
R + R LEL G + Q++ +++ AE+EEEE+++D +D S
Sbjct: 1020 RRRPARPLELDSGGEEDEKESLSEEQESTEEEEEAEEEEEEEDDDDDDSDD-----RDES 1074
Query: 320 FLGQEHQAPGH-SEAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYL 378
E A SE DS + + + A SS+ S +S +SS + + SS
Sbjct: 1075 ENDDEDTALSEASEKDEGDSDEEETVSIVTSKAEATSSSESSESSEFESSSESSPSSSED 1134
Query: 379 AEKGPGQGPGGDGHQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPV 438
E+ + + +E + E +G E+ +D E L PG P V
Sbjct: 1135 EEEVVAREEEEEEEEEEMVAEESMASAG-PEDFEQDG-----------EEAALAPGAPAV 1182
>gi|157671951 solute carrier family 4, anion exchanger, member 3
isoform 1 [Homo sapiens]
Length = 1232
Score = 35.0 bits (79), Expect = 0.16
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 6/156 (3%)
Query: 264 PRALELTRGVRPTPRVRAPATQQT---RWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSF 320
P + TR R + AP ++ T + + DEEEE+EE+ E +P PPS
Sbjct: 100 PTSARHTRRKRKKEKTSAPPSEGTPPIQEEGGAGVDEEEEEEEEEEGESEAEPVEPPPSG 159
Query: 321 LGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAE 380
Q+ + S+ G P V S +D+S + S RA +S E
Sbjct: 160 TPQKAKFSIGSDEDD-SPGLPGRAAVTKPLPSVGPHTDKSPQHSSSSPSPRARASRLAGE 218
Query: 381 KGPGQGPGG--DGHQESLPPPEFSKDSGFLEELPED 414
K P D + P G +++P D
Sbjct: 219 KSRPWSPSASYDLRERLCPGSALGNPGGPEQQVPTD 254
Score = 31.6 bits (70), Expect = 1.7
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 41/113 (36%)
Query: 319 SFLGQEHQAPGHSEAGGV-----DSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAG 373
S LG H P H G V D G P APL P +
Sbjct: 448 SVLGNHHPTPSHGPDGAVPTMADDLGEP-APLWPHDPD---------------------- 484
Query: 374 SSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLP 426
A++ P PGGDGH+ K LE++PED ++ G +P
Sbjct: 485 -----AKEKPLHMPGGDGHR--------GKSLKLLEKIPEDAEATVVLVGCVP 524
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 34.7 bits (78), Expect = 0.20
Identities = 46/160 (28%), Positives = 63/160 (39%), Gaps = 21/160 (13%)
Query: 276 TPRVR-APATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAG 334
TP+V AP Q K++ E+EEEEDEE+ E+ + E +E + A
Sbjct: 717 TPQVPLAPVQPQANGKEE--EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAA 774
Query: 335 GVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAE---KGPGQGPGGDG 391
V G P S + S+DRS S LA+ + G+ DG
Sbjct: 775 AVALGEVLGPRSGSSSEGSERSTDRS---------QEGAPSTLLADDQKESRGRASMADG 825
Query: 392 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNL 431
L P E SK + P D S T L P+P+L
Sbjct: 826 ---DLEPEEGSKTLVLVS--PGDMKKSPVT-AELAPDPDL 859
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 34.3 bits (77), Expect = 0.26
Identities = 50/196 (25%), Positives = 71/196 (36%), Gaps = 21/196 (10%)
Query: 295 EDEEEEDEEDTEDGVSFQ---PYIEPPSFLGQEHQAPGHSEAGGVDSGRPRA--PLVPSE 349
E E +++ +G S + ++ P Q+ APG G+ P A PLV +
Sbjct: 1015 ESPEPKEQRGLVEGASVKGGAEGLQDPEGQSQQVGAPGLQAPQGL----PEAIEPLVEDD 1070
Query: 350 GSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSGFLE 409
+ D + + S G S AE GPGQG GG G P +++
Sbjct: 1071 VAPGGDQAS---PEVMLGSEPAMGESAAGAEPGPGQGVGGLG-----DPGHLTREEVMEP 1122
Query: 410 ELPEDNLSSWATWGTLPPEPNL-VPGGPPVSLQTLTFCWESSPEEEEEARESEIEDSDAG 468
L E++L + G P +L GG L S + E RE E
Sbjct: 1123 PLEEESLEAKRVQGLEGPRKDLEEAGGLGTEFSELP---GKSRDPWEPPREGREESEAEA 1179
Query: 469 SWGAESTQRTEDRGRT 484
GAE E G T
Sbjct: 1180 PRGAEEAFPAETLGHT 1195
>gi|162287219 prune homolog 2 [Homo sapiens]
Length = 3088
Score = 34.3 bits (77), Expect = 0.26
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 290 KKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRP-RAPLVPS 348
+K L + +T DG++F Y+ P ++ + E V G P R P
Sbjct: 1431 EKHLMSQRNSGETTETSDGMNFTKYVSVPEKDLEKTEECNFLEPENVGGGPPHRVPRSLD 1490
Query: 349 EGSSAWDSSDR--SWASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSG 406
G DS S S + + D GS L PG G G+ ++++ E++ S
Sbjct: 1491 FGDVPIDSDVHVSSTCSEITKNLDVKGSENSL----PGAGSSGNFDRDTI-SSEYTHSSA 1545
Query: 407 FLEELPEDNLSSWATWGTLP 426
EL D+ + ++WG P
Sbjct: 1546 SSPEL-NDSSVALSSWGQQP 1564
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 34.3 bits (77), Expect = 0.26
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 8/126 (6%)
Query: 349 EGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPP-PEFSKDSGF 407
+G S + W+ + +W + + E GG S+ E K S F
Sbjct: 837 QGWGDGQKSSQGWSVSASDNWGETSRNNHWGEANKKSSSGGSDSDRSVSGWNELGKTSSF 896
Query: 408 L--EELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSPEEEEEARESEIEDS 465
+ +N S W + P P+ G PP S Q+L + S P + + +
Sbjct: 897 TWGNNINPNNSSGWDE--SSKPTPSQGWGDPPKSNQSLGWGDSSKPVSSPDWNK---QQD 951
Query: 466 DAGSWG 471
GSWG
Sbjct: 952 IVGSWG 957
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 34.3 bits (77), Expect = 0.26
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 296 DEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAWD 355
DEEEE+EE+ E+G+S + LG+E+ A AG DSG P+ E +S +
Sbjct: 83 DEEEEEEEEEEEGISALDGDQME--LGEENGA-----AGAADSG----PMEEEEAASEDE 131
Query: 356 SSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPP 398
+ D D + E+G G G G Q+ PP
Sbjct: 132 NGD-------DQGFQEGEDELGDEEEGAGD-ENGHGEQQPQPP 166
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 34.3 bits (77), Expect = 0.26
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 296 DEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAWD 355
DEEEE+EE+ E+G+S + LG+E+ A AG DSG P+ E +S +
Sbjct: 83 DEEEEEEEEEEEGISALDGDQME--LGEENGA-----AGAADSG----PMEEEEAASEDE 131
Query: 356 SSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPP 398
+ D D + E+G G G G Q+ PP
Sbjct: 132 NGD-------DQGFQEGEDELGDEEEGAGD-ENGHGEQQPQPP 166
>gi|13376339 plasticity-related protein 2 [Homo sapiens]
Length = 746
Score = 34.3 bits (77), Expect = 0.26
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 257 WFQRAKMPRALELTRGVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIE 316
W Q++ R L L P +RAPA +++ ++EEEE+EE+ ED P +
Sbjct: 439 WKQKSLEGRGLGLPDDASPG-HLRAPAEPMAEEEEEEEDEEEEEEEEEEEDEGPAPPSLY 497
Query: 317 PPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSW 369
P Q G +G P +P EG+ + V + W
Sbjct: 498 PTV---QARPGLGPRVILPPRAGPPPLVHIPEEGAQTGAGLSPKSGAGVRAKW 547
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 33.9 bits (76), Expect = 0.35
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 382 GPGQGPG-GDGHQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPP 437
GPG GPG G G PP +S+ G + N+ G P P PGGPP
Sbjct: 229 GPGPGPGPGPGPGPGPAPPNYSRPHG----MGGPNMPPPGPSGVPPGMPGQPPGGPP 281
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 33.9 bits (76), Expect = 0.35
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 382 GPGQGPG-GDGHQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPP 437
GPG GPG G G PP +S+ G + N+ G P P PGGPP
Sbjct: 229 GPGPGPGPGPGPGPGPAPPNYSRPHG----MGGPNMPPPGPSGVPPGMPGQPPGGPP 281
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,478,769
Number of Sequences: 37866
Number of extensions: 1470639
Number of successful extensions: 9392
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 8583
Number of HSP's gapped (non-prelim): 741
length of query: 491
length of database: 18,247,518
effective HSP length: 106
effective length of query: 385
effective length of database: 14,233,722
effective search space: 5479982970
effective search space used: 5479982970
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.