CCDC50 24689

Name: CCDC50	Sequence: fasta or formatted (306aa)		NCBI GI: 28372509
Description: Ymer protein short isoform		Referenced in: Coiled-Coil Proteins
Other entries for this name: alt prot [482aa] Ymer protein long isoform
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.1 31 2 C cysteine 0.7 2 1 D aspartate 6.9 21 1 E glutamate 13.1 40 3 F phenylalanine 2.0 6 1 G glycine 1.6 5 2 H histidine 4.6 14 2 I isoleucine 3.3 10 1 K lysine 11.1 34 2 L leucine 6.9 21 2 M methionine 2.3 7 1 N asparagine 1.6 5 1 P proline 4.2 13 4 Q glutamine 8.5 26 2 R arginine 6.9 21 3 S serine 6.2 19 2 T threonine 2.9 9 1 V valine 3.6 11 1 W tryptophan 0.7 2 1 Y tyrosine 2.9 9 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Ymer protein short isoform CCDC50 0.526 Ymer protein long isoform RDX 0.054 radixin TCHH 0.053 trichohyalin CCDC19 0.049 nasopharyngeal epithelium specific protein 1 TNIK 0.049 TRAF2 and NCK interacting kinase isoform 2 TNIK 0.049 TRAF2 and NCK interacting kinase isoform 1 INCENP 0.049 inner centromere protein antigens 135/155kDa isofor... CCAR1 0.048 cell-cycle and apoptosis regulatory protein 1 TNIK 0.044 TRAF2 and NCK interacting kinase isoform 4 TNIK 0.044 TRAF2 and NCK interacting kinase isoform 3 EZR 0.043 ezrin EZR 0.043 ezrin EIF3A 0.043 eukaryotic translation initiation factor 3, subunit 1... RBM25 0.041 RNA binding motif protein 25 TNIK 0.041 TRAF2 and NCK interacting kinase isoform 8 TNIK 0.041 TRAF2 and NCK interacting kinase isoform 7 MAP9 0.041 aster-associated protein MYH9 0.041 myosin, heavy polypeptide 9, non-muscle LOC283685 0.041 PREDICTED: golgi autoantigen, golgin subfamily a-li... INCENP 0.041 inner centromere protein antigens 135/155kDa isofor... TNIK 0.041 TRAF2 and NCK interacting kinase isoform 6 TNIK 0.041 TRAF2 and NCK interacting kinase isoform 5 CDC42BPA 0.039 CDC42-binding protein kinase alpha isoform B MNS1 0.039 meiosis-specific nuclear structural 1 MYH14 0.037 myosin, heavy chain 14 isoform 1 MYH14 0.037 myosin, heavy chain 14 isoform 2 MYH14 0.037 myosin, heavy chain 14 isoform 3 RB1CC1 0.037 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... RB1CC1 0.037 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.