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Search of human proteins with 28372505
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28372505 chromobox homolog 7 [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28372505 chromobox homolog 7 [Homo sapiens] 517 e-147
gi|55770830 chromobox homolog 4 [Homo sapiens] 132 3e-31
gi|46852392 chromobox homolog 6 [Homo sapiens] 120 9e-28
gi|10190682 chromobox homolog 8 [Homo sapiens] 118 6e-27
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 102 4e-22
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 102 4e-22
gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 59 3e-09
gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 59 3e-09
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 58 7e-09
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 58 7e-09
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 58 7e-09
gi|15082258 chromobox homolog 3 [Homo sapiens] 57 2e-08
gi|20544151 chromobox homolog 3 [Homo sapiens] 57 2e-08
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 52 4e-07
gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 52 4e-07
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 47 1e-05
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 47 1e-05
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 47 1e-05
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 47 1e-05
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 47 1e-05
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 47 1e-05
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 46 3e-05
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 43 3e-04
gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens] 42 7e-04
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] 41 9e-04
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 41 9e-04
gi|40254823 SH2 containing inositol phosphatase isoform b [Homo ... 41 9e-04
gi|64085167 SH2 containing inositol phosphatase isoform a [Homo ... 41 9e-04
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 41 9e-04
gi|223468617 family with sequence similarity 75, member C1 [Homo... 40 0.003
>gi|28372505 chromobox homolog 7 [Homo sapiens]
Length = 251
Score = 517 bits (1331), Expect = e-147
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK 60
MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
Sbjct: 1 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK 60
Query: 61 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA 120
EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
Sbjct: 61 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA 120
Query: 121 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP 180
GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
Sbjct: 121 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP 180
Query: 181 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA 240
DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
Sbjct: 181 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA 240
Query: 241 EGFFRDRSGKF 251
EGFFRDRSGKF
Sbjct: 241 EGFFRDRSGKF 251
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 132 bits (332), Expect = 3e-31
Identities = 57/82 (69%), Positives = 73/82 (89%)
Query: 1 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK 60
MEL A+GE VFAVESI KKR+RKG+VEYLVKW+GW PKY+TWEPEE+ILDPRL++A++ +
Sbjct: 1 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR 60
Query: 61 EERDRASGYRKRGPKPKRLLLQ 82
E +++ GYRKRGPKPK L++Q
Sbjct: 61 ERQEQLMGYRKRGPKPKPLVVQ 82
Score = 35.0 bits (79), Expect = 0.062
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 176 EPPAPDVLQAAGEWEPA--AQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVT 233
E PA + A P A+ P EA + AE + P + +TD+TAN +TVT
Sbjct: 496 ETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFF--GNIIITDVTANCLTVT 553
Query: 234 FRE 236
F+E
Sbjct: 554 FKE 556
>gi|46852392 chromobox homolog 6 [Homo sapiens]
Length = 412
Score = 120 bits (302), Expect = 9e-28
Identities = 55/82 (67%), Positives = 67/82 (81%)
Query: 1 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK 60
MELSA+GE+VFA ESI K+R+RKG++EYLVKWKGW KYSTWEPEE+ILD RL+ A+E+K
Sbjct: 1 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK 60
Query: 61 EERDRASGYRKRGPKPKRLLLQ 82
E G +KRGPKPK LL+
Sbjct: 61 ERERELYGPKKRGPKPKTFLLK 82
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 180 PDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPAL-PSSEVTVTDITANSITVTFREAQ 238
P+V AAG P A P A A W P + P S V VTD+T+N +TVT +E
Sbjct: 330 PEVTAAAGPAPPTAPEP---AGASSEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFC 386
Query: 239 AAEGFFRDRSG 249
E F + +G
Sbjct: 387 NPEDFEKVAAG 397
>gi|10190682 chromobox homolog 8 [Homo sapiens]
Length = 389
Score = 118 bits (295), Expect = 6e-27
Identities = 53/82 (64%), Positives = 67/82 (81%)
Query: 1 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK 60
MELSA+GE+VFA E++ K+R+RKG++EYLVKWKGW KYSTWEPEE+ILD RL+ A+EE+
Sbjct: 1 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 60
Query: 61 EERDRASGYRKRGPKPKRLLLQ 82
E G +KRGPKPK LL+
Sbjct: 61 EREMELYGPKKRGPKPKTFLLK 82
Score = 42.0 bits (97), Expect = 5e-04
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 11/53 (20%)
Query: 196 PEEEADADLAEGPPPWTPALPSSE-VTVTDITANSITVTFREAQAAEGFFRDR 247
PEEE+ W+P+L + E V VTD+T+N +TVT +E+ +GFF+++
Sbjct: 346 PEEES----------WSPSLTNLEKVVVTDVTSNFLTVTIKESNTDQGFFKEK 388
>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
Length = 211
Score = 102 bits (253), Expect = 4e-22
Identities = 45/76 (59%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 2 ELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE 61
ELS++GEQVFA E I KR+RKGK+EYLVKW+GW K+++WEPEE+ILDPRL++A+++KE
Sbjct: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
Query: 62 ERDRASGYRKRGPKPK 77
RKRG +P+
Sbjct: 63 HEKEVQN-RKRGKRPR 77
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 102 bits (253), Expect = 4e-22
Identities = 45/76 (59%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 2 ELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE 61
ELS++GEQVFA E I KR+RKGK+EYLVKW+GW K+++WEPEE+ILDPRL++A+++KE
Sbjct: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
Query: 62 ERDRASGYRKRGPKPK 77
RKRG +P+
Sbjct: 63 HEKEVQN-RKRGKRPR 77
Score = 38.5 bits (88), Expect = 0.006
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 23/94 (24%)
Query: 177 PPAPDVLQAAGEWEPAAQPPEEEA-------DADLAEGPPPWTPALPS------------ 217
P + A GE AA PE A D+D PP T PS
Sbjct: 437 PSGQESRTAPGEARKAATLPEMSAGEESSSSDSDPDSASPPSTGQNPSVSVQTSQDWKPT 496
Query: 218 ----SEVTVTDITANSITVTFREAQAAEGFFRDR 247
V VTD+TAN ITVT +E+ + GFF R
Sbjct: 497 RSLIEHVFVTDVTANLITVTVKESPTSVGFFNLR 530
>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 59.3 bits (142), Expect = 3e-09
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 8 EQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE----ER 63
E+ + VE + +RV KGKVEYL+KWKG+ + +TWEPEE++ P L+ + + + E
Sbjct: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHET 77
Query: 64 DRASGYRKR 72
D++ G +++
Sbjct: 78 DKSEGGKRK 86
>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 59.3 bits (142), Expect = 3e-09
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 8 EQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE----ER 63
E+ + VE + +RV KGKVEYL+KWKG+ + +TWEPEE++ P L+ + + + E
Sbjct: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHET 77
Query: 64 DRASGYRKR 72
D++ G +++
Sbjct: 78 DKSEGGKRK 86
>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 58.2 bits (139), Expect = 7e-09
Identities = 24/60 (40%), Positives = 43/60 (71%)
Query: 4 SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEER 63
S+ E+ + VE + +RV KG+VEYL+KWKG+ +++TWEPE+++ P L+ + +K ++
Sbjct: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 58.2 bits (139), Expect = 7e-09
Identities = 24/60 (40%), Positives = 43/60 (71%)
Query: 4 SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEER 63
S+ E+ + VE + +RV KG+VEYL+KWKG+ +++TWEPE+++ P L+ + +K ++
Sbjct: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 58.2 bits (139), Expect = 7e-09
Identities = 24/60 (40%), Positives = 43/60 (71%)
Query: 4 SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEER 63
S+ E+ + VE + +RV KG+VEYL+KWKG+ +++TWEPE+++ P L+ + +K ++
Sbjct: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
>gi|15082258 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 11 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRASGYR 70
F VE + +RV GKVEY +KWKG+ +TWEPEE++ P L+ A+ ++ +G
Sbjct: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQK----AGKE 85
Query: 71 KRGPKPKRL 79
K G K K L
Sbjct: 86 KDGTKRKSL 94
>gi|20544151 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 11 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRASGYR 70
F VE + +RV GKVEY +KWKG+ +TWEPEE++ P L+ A+ ++ +G
Sbjct: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQK----AGKE 85
Query: 71 KRGPKPKRL 79
K G K K L
Sbjct: 86 KDGTKRKSL 94
>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
Length = 860
Score = 52.4 bits (124), Expect = 4e-07
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 7 GEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEEKEERDR 65
GE VF VE I + GKV Y V+WKG+ TWEPE H+ D +++ + +K ++
Sbjct: 55 GEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENK 114
Query: 66 ASGYRK 71
A RK
Sbjct: 115 AKAVRK 120
>gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
Length = 544
Score = 52.4 bits (124), Expect = 4e-07
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 8 EQVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVM-----AYEEKE 61
E+++ VE I KR +KGK EYLV+WKG+ + TWEPE+H+++ + + EK+
Sbjct: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
Query: 62 ERDRASGYRKRGPKPKRLLLQRLYSMD----------LRSSHKAKGKEKLCFSL-----T 106
+ + + P R + R + + + H++K + S T
Sbjct: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFRKNT 123
Query: 107 CP-LGSGSPEGVVKAGAPELVDKGPL 131
P L S + K+G LV K P+
Sbjct: 124 APSLSSRKNMDLAKSGIKILVPKSPV 149
>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform
b [Homo sapiens]
Length = 554
Score = 47.4 bits (111), Expect = 1e-05
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 6 IGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILD 50
+ Q F VE+I KR K G +YLV+WKG+ + TWEPE+H+++
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMN 46
>gi|25453481 Y chromosome chromodomain protein 1, telomeric
isoform a [Homo sapiens]
Length = 540
Score = 47.4 bits (111), Expect = 1e-05
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 6 IGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILD 50
+ Q F VE+I KR K G +YLV+WKG+ + TWEPE+H+++
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMN 46
>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
sapiens]
Length = 554
Score = 47.4 bits (111), Expect = 1e-05
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 6 IGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILD 50
+ Q F VE+I KR K G +YLV+WKG+ + TWEPE+H+++
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMN 46
>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
sapiens]
Length = 540
Score = 47.4 bits (111), Expect = 1e-05
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 6 IGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILD 50
+ Q F VE+I KR K G +YLV+WKG+ + TWEPE+H+++
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMN 46
>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
Length = 541
Score = 47.4 bits (111), Expect = 1e-05
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 6 IGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILD 50
+ Q F VE+I KR K G +YLV+WKG+ + TWEPE+H+++
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMN 46
>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
Length = 541
Score = 47.4 bits (111), Expect = 1e-05
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 6 IGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILD 50
+ Q F VE+I KR K G +YLV+WKG+ + TWEPE+H+++
Sbjct: 1 MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMN 46
>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
Length = 506
Score = 46.2 bits (108), Expect = 3e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 16 IRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL 49
+ K++ +KGK EYL++WKG+ TWEPE H+L
Sbjct: 13 VDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL 46
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 42.7 bits (99), Expect = 3e-04
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 18 KKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRASGYRKRGPKPK 77
+K G+++YL+KWKGW ++TWE EE + + + Y+K+ + K
Sbjct: 308 EKNKEPGEIQYLIKWKGWSHIHNTWETEE-------TLKQQNVRGMKKLDNYKKKDQETK 360
Query: 78 RLL 80
R L
Sbjct: 361 RWL 363
>gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo
sapiens]
Length = 350
Score = 41.6 bits (96), Expect = 7e-04
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 28 YLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRASGYRKRGPKPK 77
YLVKWKGWP +TWEP +++ P L+ + + + + + PK
Sbjct: 4 YLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKKGKAITPK 53
>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
Length = 412
Score = 41.2 bits (95), Expect = 9e-04
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 19 KRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERD 64
K++R+ + YLVKW+G+P STWEP +++ R++ + + ER+
Sbjct: 52 KKIREQEY-YLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERE 96
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 41.2 bits (95), Expect = 9e-04
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 23 KGKVEYLVKWKGWPPKYSTWEPEEHI 48
+G+++YL+KWKGW +STWE EE +
Sbjct: 302 EGEIQYLIKWKGWSYIHSTWESEESL 327
Score = 29.3 bits (64), Expect = 3.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 4 SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPE 45
S +G+ F S +K + EYL KW G P +WE E
Sbjct: 391 STLGQTDFPAHS--RKPAPSNEPEYLCKWMGLPYSECSWEDE 430
>gi|40254823 SH2 containing inositol phosphatase isoform b [Homo
sapiens]
Length = 1188
Score = 41.2 bits (95), Expect = 9e-04
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 44 PEEHILDPRLVMAYEEKEERDRASGYRKRGPKPKRLLLQRLYSMDLRSS--HKAKGKEKL 101
PE IL P +V+ + +E DR G K+ P P+ S + R++ K++GK K
Sbjct: 1050 PEPGILSPSIVLT--KAQEADRGEGPGKQVPAPRLRSFTCSSSAEGRAAGGDKSQGKPKT 1107
Query: 102 CFSLTCPLGSGSPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGP 161
S P+ + P +K E+ + P PT PL P K+ L L K
Sbjct: 1108 PVSSQAPVPAKRP---IKPSRSEINQQTPPTPTPRPPL--PVKSPAVLHLQHSKGRDYRD 1162
Query: 162 NLESHSHRRELFLQEPPAP 180
N E H + + PP P
Sbjct: 1163 NTELPHHGKHRPEEGPPGP 1181
Score = 28.1 bits (61), Expect = 7.6
Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 129 GPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAPDVLQAAGE 188
G +P PL KP L S FP P + S + + PP P
Sbjct: 1000 GDTLPQEDLPLTKPEMFENPLYGSLSSFPKPAPRKDQESPKMPR-KEPPPCP-------- 1050
Query: 189 WEPAAQPPE----EEADADLAEGPPPWTPA 214
EP P + +AD EGP PA
Sbjct: 1051 -EPGILSPSIVLTKAQEADRGEGPGKQVPA 1079
>gi|64085167 SH2 containing inositol phosphatase isoform a [Homo
sapiens]
Length = 1189
Score = 41.2 bits (95), Expect = 9e-04
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 44 PEEHILDPRLVMAYEEKEERDRASGYRKRGPKPKRLLLQRLYSMDLRSS--HKAKGKEKL 101
PE IL P +V+ + +E DR G K+ P P+ S + R++ K++GK K
Sbjct: 1051 PEPGILSPSIVLT--KAQEADRGEGPGKQVPAPRLRSFTCSSSAEGRAAGGDKSQGKPKT 1108
Query: 102 CFSLTCPLGSGSPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGP 161
S P+ + P +K E+ + P PT PL P K+ L L K
Sbjct: 1109 PVSSQAPVPAKRP---IKPSRSEINQQTPPTPTPRPPL--PVKSPAVLHLQHSKGRDYRD 1163
Query: 162 NLESHSHRRELFLQEPPAP 180
N E H + + PP P
Sbjct: 1164 NTELPHHGKHRPEEGPPGP 1182
Score = 28.1 bits (61), Expect = 7.6
Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 129 GPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAPDVLQAAGE 188
G +P PL KP L S FP P + S + + PP P
Sbjct: 1001 GDTLPQEDLPLTKPEMFENPLYGSLSSFPKPAPRKDQESPKMPR-KEPPPCP-------- 1051
Query: 189 WEPAAQPPE----EEADADLAEGPPPWTPA 214
EP P + +AD EGP PA
Sbjct: 1052 -EPGILSPSIVLTKAQEADRGEGPGKQVPA 1080
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 41.2 bits (95), Expect = 9e-04
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 23 KGKVEYLVKWKGWPPKYSTWEPEEHI 48
+G+++YL+KWKGW +STWE EE +
Sbjct: 302 EGEIQYLIKWKGWSYIHSTWESEESL 327
Score = 29.3 bits (64), Expect = 3.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 4 SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPE 45
S +G+ F S +K + EYL KW G P +WE E
Sbjct: 391 STLGQTDFPAHS--RKPAPSNEPEYLCKWMGLPYSECSWEDE 430
>gi|223468617 family with sequence similarity 75, member C1 [Homo
sapiens]
Length = 1188
Score = 39.7 bits (91), Expect = 0.003
Identities = 53/189 (28%), Positives = 71/189 (37%), Gaps = 24/189 (12%)
Query: 36 PPKYSTWEPEEHILDPRLVMAYEEKEERDRASGYRK-----------RGPKPKRLLLQRL 84
PP S + + H++ R +++ R R G K RG + LL +L
Sbjct: 54 PPSPSPRKRKRHLVSQRHLVSQCPTGRRGRPRGRMKNHSLRACRECPRGLEETWDLLSQL 113
Query: 85 YSMDLRSSHKAKGKEKLCFSLTCP--LGSGSPEGVVKAGAPELVDKGPLVPTLPFPLRKP 142
S L H KG P +G +P+G ++ + D P+V L P P
Sbjct: 114 QS--LLGPHLEKGDFGQLSGPDPPGEVGKRTPDGASRSSHEPMEDAAPIVSPLASP--DP 169
Query: 143 RKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAPDVLQAAGEWEPAAQPPEEEADA 202
R H S PP GP S S L +PP P +L EP A P
Sbjct: 170 RTKHPQDLAST---PPPGPMTTSVS---SLSASQPPEPSLLLERPSPEPPALFPHPPHTP 223
Query: 203 D-LAEGPPP 210
D LA PPP
Sbjct: 224 DPLACSPPP 232
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,400,821
Number of Sequences: 37866
Number of extensions: 736606
Number of successful extensions: 2753
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 2589
Number of HSP's gapped (non-prelim): 273
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.