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Search of human proteins with 28329430
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28329430 aprataxin isoform b [Homo sapiens]
(306 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28329430 aprataxin isoform b [Homo sapiens] 626 e-180
gi|28329436 aprataxin isoform a [Homo sapiens] 596 e-171
gi|28329433 aprataxin isoform c [Homo sapiens] 419 e-117
gi|28329427 aprataxin isoform d [Homo sapiens] 246 2e-65
gi|8923156 aprataxin isoform d [Homo sapiens] 246 2e-65
gi|31543419 polynucleotide kinase 3' phosphatase [Homo sapiens] 70 2e-12
gi|189217863 histidine triad nucleotide binding protein 3 [Homo ... 59 7e-09
gi|4885413 histidine triad nucleotide binding protein 1 [Homo sa... 47 2e-05
gi|14211923 PKCI-1-related HIT protein [Homo sapiens] 46 5e-05
gi|7661734 mRNA decapping enzyme [Homo sapiens] 38 0.010
gi|27734905 aprataxin and PNKP like factor [Homo sapiens] 34 0.19
gi|103472005 antigen identified by monoclonal antibody Ki-67 iso... 33 0.32
gi|57864582 hornerin [Homo sapiens] 31 1.2
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens] 30 2.0
gi|38348206 Ras and Rab interactor-like [Homo sapiens] 30 2.7
gi|118572606 hemicentin 1 [Homo sapiens] 30 3.5
gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo ... 30 3.5
gi|58331173 chaperonin containing TCP1, subunit 6B [Homo sapiens] 30 3.5
gi|218931253 diacylglycerol lipase, beta isoform 2 [Homo sapiens] 30 3.5
gi|218931251 diacylglycerol lipase, beta isoform 1 [Homo sapiens] 30 3.5
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 30 3.5
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 29 6.0
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 29 6.0
gi|8922446 THAP domain containing, apoptosis associated protein ... 28 7.8
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 28 7.8
gi|145279222 WD repeat domain 66 [Homo sapiens] 28 7.8
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 28 7.8
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 28 7.8
>gi|28329430 aprataxin isoform b [Homo sapiens]
Length = 306
Score = 626 bits (1614), Expect = e-180
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MSNVNLSVSDFWRVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQ 60
MSNVNLSVSDFWRVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQ
Sbjct: 1 MSNVNLSVSDFWRVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQ 60
Query: 61 LKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKN 120
LKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKN
Sbjct: 61 LKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKN 120
Query: 121 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH 180
PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH
Sbjct: 121 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH 180
Query: 181 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH 240
WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH
Sbjct: 181 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH 240
Query: 241 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY 300
MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
Sbjct: 241 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY 300
Query: 301 FLESQE 306
FLESQE
Sbjct: 301 FLESQE 306
>gi|28329436 aprataxin isoform a [Homo sapiens]
Length = 342
Score = 596 bits (1536), Expect = e-171
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 15 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 74
MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ
Sbjct: 1 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 60
Query: 75 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 134
VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN
Sbjct: 61 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 120
Query: 135 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 194
SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM
Sbjct: 121 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 180
Query: 195 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 254
QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG
Sbjct: 181 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 240
Query: 255 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 305
SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ
Sbjct: 241 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 291
>gi|28329433 aprataxin isoform c [Homo sapiens]
Length = 254
Score = 419 bits (1077), Expect = e-117
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 103 MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 162
MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS
Sbjct: 1 MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 60
Query: 163 VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 222
VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT
Sbjct: 61 VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 120
Query: 223 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 282
SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF
Sbjct: 121 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 180
Query: 283 DSPCLKNKKHWNSFNTEYFLESQ 305
DSPCLKNKKHWNSFNTEYFLESQ
Sbjct: 181 DSPCLKNKKHWNSFNTEYFLESQ 203
>gi|28329427 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 246 bits (628), Expect = 2e-65
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 189 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 248
MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
Query: 249 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 305
IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ
Sbjct: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 117
>gi|8923156 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 246 bits (628), Expect = 2e-65
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 189 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 248
MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
Query: 249 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 305
IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ
Sbjct: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 117
>gi|31543419 polynucleotide kinase 3' phosphatase [Homo sapiens]
Length = 521
Score = 70.1 bits (170), Expect = 2e-12
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 37 EAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQ 96
+A+V+GRGP T++TD+KCSR QV+L A+ V VKQ+GVNP++ + + E L
Sbjct: 29 QALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLG 88
Query: 97 PGQVLHMVNELYPYIVEFEE 116
G L++VN L+P + +EE
Sbjct: 89 VGDTLYLVNGLHPLTLRWEE 108
>gi|189217863 histidine triad nucleotide binding protein 3 [Homo
sapiens]
Length = 182
Score = 58.5 bits (140), Expect = 7e-09
Identities = 30/94 (31%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 190 QDPKMQVY--KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEK 247
QDP ++ ++E ++ KD P A +H+LV+P I + + + ++ +EL+++M TVG+
Sbjct: 57 QDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKT 116
Query: 248 VIVDFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 279
++ + R+G+H P S+SH+HLHV++
Sbjct: 117 ILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLA 150
>gi|4885413 histidine triad nucleotide binding protein 1 [Homo
sapiens]
Length = 126
Score = 47.0 bits (110), Expect = 2e-05
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 184 GLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHT 243
G I + P +++D++ + D P+A H+LV+P IS + + LL H+
Sbjct: 20 GKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMI 79
Query: 244 VGEKVIVDFAGSSKLRFRL--GYHAIPSMSHVHLHVI 278
VG+K D + R + G S+ HVHLHV+
Sbjct: 80 VGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVL 116
>gi|14211923 PKCI-1-related HIT protein [Homo sapiens]
Length = 163
Score = 45.8 bits (107), Expect = 5e-05
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 142 AAQEAEAGTGLEPGSNSGQCSVP----LKKGKDAPIKKESLGHWSQGLKISMQDPKMQVY 197
AA+ A A TG+ G G V + K + A + +S+ L S+ P +Y
Sbjct: 13 AARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSL--PADILY 70
Query: 198 KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV--IVDFAGS 255
+D+Q +V +D P+A H+LV+P I + E +LL H+ V ++
Sbjct: 71 EDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDG 130
Query: 256 SKLRFRLGYHAIPSMSHVHLHVI 278
+L G S+ H+H+HV+
Sbjct: 131 YRLVINDGKLGAQSVYHLHIHVL 153
>gi|7661734 mRNA decapping enzyme [Homo sapiens]
Length = 337
Score = 38.1 bits (87), Expect = 0.010
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 224 ISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFD 283
I SL+ + EHL LL+++ G++ I+ R+ H +PS H+H+H + F+
Sbjct: 227 IRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFE 286
Query: 284 SP 285
+P
Sbjct: 287 AP 288
>gi|27734905 aprataxin and PNKP like factor [Homo sapiens]
Length = 511
Score = 33.9 bits (76), Expect = 0.19
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 40 VIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQP 97
VIGRGP ITDK+ SR+ L E G +++K + NP S K Q + L+P
Sbjct: 24 VIGRGPLLGITDKRVSRRHAIL--EVAGGQLRIKPIHTNPCFYQS--SEKSQLLPLKP 77
>gi|103472005 antigen identified by monoclonal antibody Ki-67
isoform 1 [Homo sapiens]
Length = 3256
Score = 33.1 bits (74), Expect = 0.32
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 78 NPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRK-------RK 130
NPT ++ VI D+ V+L+ G V+ +++ + Y E + + E RK R+
Sbjct: 67 NPTQVNGSVI--DEPVRLKHGDVITIIDRSFRYENESLQNGRK-STEFPRKIREQEPARR 123
Query: 131 RSGNSDSIERDA-AQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 184
S +S S + D AQ+++A + + G SG V +K K+ +S +QG
Sbjct: 124 VSRSSFSSDPDEKAQDSKAYSKITEGKVSGNPQVHIKNVKEDSTADDSKDSVAQG 178
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 31.2 bits (69), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 132 SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 184
SG+S S E+ ++ ++ G + GS+SG S G+ ++SLGH G
Sbjct: 1891 SGHSSSYEQHGSRSGQSSRGEQHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 1940
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 132 SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 184
SG+S S E+ ++ ++ G GS+SG S G+ ++SLGH G
Sbjct: 1421 SGHSSSYEQHGSRSGQSSRGERHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 1470
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 132 SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 184
SG+S S E+ ++ ++ G GS+SG S G+ ++SLGH G
Sbjct: 2361 SGHSSSYEQHGSRSGQSSRGERHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 2410
Score = 28.9 bits (63), Expect = 6.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 132 SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 184
SG+S S E+ ++ ++ + GS+SG S G+ ++SLGH G
Sbjct: 951 SGHSSSYEQHGSRSGQSSRSEQHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 1000
>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
Length = 543
Score = 30.4 bits (67), Expect = 2.0
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 90 DQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAG 149
D EV+ Q +H +L I E E E KN G + + I ++ +
Sbjct: 28 DSEVEFQLYSQIHYAQDLDDVIREEEHEEKNSG-NSESSSSKPNQKKLIVLSDSEVIQLS 86
Query: 150 TGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 194
G E + S + S+ KGK+ ++ + H GL S+Q ++
Sbjct: 87 DGSEVITLSDEDSIYRCKGKNVRVQAQENAH---GLSSSLQSNEL 128
>gi|38348206 Ras and Rab interactor-like [Homo sapiens]
Length = 452
Score = 30.0 bits (66), Expect = 2.7
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 75 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 134
+G D V IG+ Q+ PG+VL +VN+LY LETHR R
Sbjct: 29 LGPRDEHTDPVQIGRVQQDT--PGKVLSIVNQLY--------------LETHRGWGREQT 72
Query: 135 SDSIERDAAQ 144
E +AAQ
Sbjct: 73 PQETEPEAAQ 82
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 29.6 bits (65), Expect = 3.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 95 LQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQE--------A 146
LQPGQ+ V+ L P+ + F G++ + K S N D + + E +
Sbjct: 444 LQPGQIPCSVDSLLPFTLSFVRNGVTLGVDQYLKESASVNLDIAKVTLSDEGFYECIAVS 503
Query: 147 EAGTG 151
AGTG
Sbjct: 504 SAGTG 508
>gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo
sapiens]
Length = 2146
Score = 29.6 bits (65), Expect = 3.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 232 REHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHA 266
REHLELL + V E + AGS R L ++A
Sbjct: 1885 REHLELLARLRGVPEAQVAQTAGSGLARLGLSWYA 1919
>gi|58331173 chaperonin containing TCP1, subunit 6B [Homo sapiens]
Length = 530
Score = 29.6 bits (65), Expect = 3.5
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 63 AECNKGYVKVKQVGVNPTSIDSV 85
A+ NKG+V + Q G++P S+DS+
Sbjct: 283 AQSNKGFVVINQKGIDPFSLDSL 305
>gi|218931253 diacylglycerol lipase, beta isoform 2 [Homo sapiens]
Length = 543
Score = 29.6 bits (65), Expect = 3.5
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 40 VIGRGPETKITDKKCSRQQVQLKAECNKGYVKV-------KQVGVNPTSIDSVVIGKDQE 92
VI R T + D K R+ +++ A CNK K+ + G NP ++ + + G DQE
Sbjct: 367 VIPRLSVTNLEDLK--RRILRVVAHCNKPKYKILLHGLWYELFGGNPNNLPTELDGGDQE 424
Query: 93 VKLQP 97
V QP
Sbjct: 425 VLTQP 429
>gi|218931251 diacylglycerol lipase, beta isoform 1 [Homo sapiens]
Length = 672
Score = 29.6 bits (65), Expect = 3.5
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 40 VIGRGPETKITDKKCSRQQVQLKAECNKGYVKV-------KQVGVNPTSIDSVVIGKDQE 92
VI R T + D K R+ +++ A CNK K+ + G NP ++ + + G DQE
Sbjct: 496 VIPRLSVTNLEDLK--RRILRVVAHCNKPKYKILLHGLWYELFGGNPNNLPTELDGGDQE 553
Query: 93 VKLQP 97
V QP
Sbjct: 554 VLTQP 558
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 29.6 bits (65), Expect = 3.5
Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 9/156 (5%)
Query: 29 QRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIG 88
+RI+L V+ G +T + LKA ++ ++ + + + ++ +
Sbjct: 2219 ERIQLSDCYRGVVFDGLDTLFAQNAAAALLCLLKAIGSREHIYILNMAQDYAAMKAQEKA 2278
Query: 89 K-DQEVKLQPG-------QVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIER 140
K +QE + G ++ +M E Y + E E+ + G++ + ++ + + +
Sbjct: 2279 KKEQEERKHKGALEKEKERLQNMDEEEYDALTEEEKLTFDRGIQQALRERKKREQERLAK 2338
Query: 141 DAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKE 176
+ QE + LE + +KKGK PIK+E
Sbjct: 2339 EM-QEKKLQQELERQKEEDELKRRVKKGKQGPIKEE 2373
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 6.0
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 117 EAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKE 176
E+ P + +K+K+ D +E + E G S + P K K I+K+
Sbjct: 264 ESTEPQKQCSKKKKKR---DRVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKI-IQKD 319
Query: 177 SLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLE 236
+ S+ K + +D ++ +++ +KD SSL R+H +
Sbjct: 320 IIKEASEASKEN-RDIEISTEEEKDTGDLKD-----------------SSLLKTKRKHKK 361
Query: 237 LLKHMHTVGEKVI 249
K H +GE+VI
Sbjct: 362 KHKERHKMGEEVI 374
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 6.0
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 117 EAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKE 176
E+ P + +K+K+ D +E + E G S + P K K I+K+
Sbjct: 264 ESTEPQKQCSKKKKKR---DRVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKI-IQKD 319
Query: 177 SLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLE 236
+ S+ K + +D ++ +++ +KD SSL R+H +
Sbjct: 320 IIKEASEASKEN-RDIEISTEEEKDTGDLKD-----------------SSLLKTKRKHKK 361
Query: 237 LLKHMHTVGEKVI 249
K H +GE+VI
Sbjct: 362 KHKERHKMGEEVI 374
>gi|8922446 THAP domain containing, apoptosis associated protein 1
isoform 1 [Homo sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 7.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 24 QDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLK 62
+D+ HQR R+ LE V + K ++C RQ+ QL+
Sbjct: 140 EDTMHQRKRIHQLEQQVEKLRKKLKTAQQRCRRQERQLE 178
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 28.5 bits (62), Expect = 7.8
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 22/96 (22%)
Query: 178 LGHWSQGLKISMQDPKMQV--------YKDEQVVVIKDKYPKARYHWLVLPWTSISSLKA 229
L HW + P +QV KDE+++ +K+K K L+
Sbjct: 829 LRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELLKVKEKQTKVE-----------GELEE 877
Query: 230 VAREHLELLKHMHTVGEKVIVD---FAGSSKLRFRL 262
+ R+H +LL+ + + E++ + FA + ++R RL
Sbjct: 878 MERKHQQLLEEKNILAEQLQAETELFAEAEEMRARL 913
>gi|145279222 WD repeat domain 66 [Homo sapiens]
Length = 1149
Score = 28.5 bits (62), Expect = 7.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 115 EEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQ 160
EEE NP + ++ D+I +QE E TG E G G+
Sbjct: 22 EEEEPNPNYKEVEDPQQESKDDTIAWRESQEEERKTGEEEGEEEGK 67
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 28.5 bits (62), Expect = 7.8
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 82 IDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEF---EEEAKNPGLETHRKRKRSGNSDSI 138
I+ +IG D + G + + ++ I E+ E K+P LE + K+S D
Sbjct: 36 INCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECREKDPKLEIRYRHKKSRERDGN 95
Query: 139 ERDAAQEAEAGTG 151
ERD+++ + G G
Sbjct: 96 ERDSSEPRDEGGG 108
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 28.5 bits (62), Expect = 7.8
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 82 IDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEF---EEEAKNPGLETHRKRKRSGNSDSI 138
I+ +IG D + G + + ++ I E+ E K+P LE + K+S D
Sbjct: 36 INCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECREKDPKLEIRYRHKKSRERDGN 95
Query: 139 ERDAAQEAEAGTG 151
ERD+++ + G G
Sbjct: 96 ERDSSEPRDEGGG 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,901,203
Number of Sequences: 37866
Number of extensions: 529512
Number of successful extensions: 1642
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 45
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.