Search of human proteins with 28302131

Search of human proteins with 28302131

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28302131 A-gamma globin [Homo sapiens]
         (147 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28302131 A-gamma globin [Homo sapiens]                             300   4e-82
gi|6715607 G-gamma globin [Homo sapiens]                              296   5e-81
gi|4885393 epsilon globin [Homo sapiens]                              248   1e-66
gi|4504349 beta globin [Homo sapiens]                                 229   6e-61
gi|4504351 delta globin [Homo sapiens]                                225   1e-59
gi|4504347 alpha 1 globin [Homo sapiens]                              110   6e-25
gi|4504345 alpha 2 globin [Homo sapiens]                              110   6e-25
gi|4885397 hemoglobin, zeta [Homo sapiens]                            110   6e-25
gi|4885395 theta 1 globin [Homo sapiens]                               94   4e-20
gi|51510893 hemoglobin mu chain [Homo sapiens]                         93   9e-20
gi|19549331 cytoglobin [Homo sapiens]                                  74   6e-14
gi|44955888 myoglobin [Homo sapiens]                                   56   1e-08
gi|44955885 myoglobin [Homo sapiens]                                   56   1e-08
gi|4885477 myoglobin [Homo sapiens]                                    56   1e-08
gi|10864065 neuroglobin [Homo sapiens]                                 40   0.001
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]      33   0.086
gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens]               30   0.72 
gi|163644316 hypothetical protein LOC23255 [Homo sapiens]              28   2.1  
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]        28   2.8  
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]        28   2.8  
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]        28   2.8  
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]      28   2.8  
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      28   3.6  
gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens]            27   6.1  
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    27   8.0  
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    27   8.0  
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    27   8.0  
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s...    27   8.0  

>gi|28302131 A-gamma globin [Homo sapiens]
          Length = 147

 Score =  300 bits (767), Expect = 4e-82
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
           MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK
Sbjct: 1   MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60

Query: 61  VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
           VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG
Sbjct: 61  VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120

Query: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147
           KEFTPEVQASWQKMVTAVASALSSRYH
Sbjct: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147


>gi|6715607 G-gamma globin [Homo sapiens]
          Length = 147

 Score =  296 bits (757), Expect = 5e-81
 Identities = 145/147 (98%), Positives = 145/147 (98%)

Query: 1   MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
           MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK
Sbjct: 1   MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60

Query: 61  VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
           VKAHGKKVLTSLGDA KHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG
Sbjct: 61  VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120

Query: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147
           KEFTPEVQASWQKMVT VASALSSRYH
Sbjct: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147


>gi|4885393 epsilon globin [Homo sapiens]
          Length = 147

 Score =  248 bits (634), Expect = 1e-66
 Identities = 117/147 (79%), Positives = 133/147 (90%)

Query: 1   MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
           M HFT E+KA +TSLW K+NVE+AGGE LGRLLVVYPWTQRFFDSFGNLSS SAI+GNPK
Sbjct: 1   MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60

Query: 61  VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
           VKAHGKKVLTS GDA K++D+LK  FA+LSELHCDKLHVDPENFKLLGNV+V +LA HFG
Sbjct: 61  VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120

Query: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147
           KEFTPEVQA+WQK+V+AVA AL+ +YH
Sbjct: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147


>gi|4504349 beta globin [Homo sapiens]
          Length = 147

 Score =  229 bits (584), Expect = 6e-61
 Identities = 107/147 (72%), Positives = 126/147 (85%)

Query: 1   MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
           M H T E+K+ +T+LWGKVNV++ GGE LGRLLVVYPWTQRFF+SFG+LS+  A+MGNPK
Sbjct: 1   MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK 60

Query: 61  VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
           VKAHGKKVL +  D   HLD+LKGTFA LSELHCDKLHVDPENF+LLGNVLV VLA HFG
Sbjct: 61  VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG 120

Query: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147
           KEFTP VQA++QK+V  VA+AL+ +YH
Sbjct: 121 KEFTPPVQAAYQKVVAGVANALAHKYH 147


>gi|4504351 delta globin [Homo sapiens]
          Length = 147

 Score =  225 bits (573), Expect = 1e-59
 Identities = 105/147 (71%), Positives = 125/147 (85%)

Query: 1   MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
           M H T E+K  + +LWGKVNV+  GGE LGRLLVVYPWTQRFF+SFG+LSS  A+MGNPK
Sbjct: 1   MVHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPK 60

Query: 61  VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
           VKAHGKKVL +  D   HLD+LKGTF+QLSELHCDKLHVDPENF+LLGNVLV VLA +FG
Sbjct: 61  VKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFG 120

Query: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147
           KEFTP++QA++QK+V  VA+AL+ +YH
Sbjct: 121 KEFTPQMQAAYQKVVAGVANALAHKYH 147


>gi|4504347 alpha 1 globin [Homo sapiens]
          Length = 142

 Score =  110 bits (274), Expect = 6e-25
 Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 8/141 (5%)

Query: 8   DKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHG 65
           DK  + + WGKV     + G E L R+ + +P T+ +F  F +LS  SA     +VK HG
Sbjct: 7   DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60

Query: 66  KKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTP 125
           KKV  +L +A  H+DD+    + LS+LH  KL VDP NFKLL + L+  LA H   EFTP
Sbjct: 61  KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120

Query: 126 EVQASWQKMVTAVASALSSRY 146
            V AS  K + +V++ L+S+Y
Sbjct: 121 AVHASLDKFLASVSTVLTSKY 141


>gi|4504345 alpha 2 globin [Homo sapiens]
          Length = 142

 Score =  110 bits (274), Expect = 6e-25
 Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 8/141 (5%)

Query: 8   DKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHG 65
           DK  + + WGKV     + G E L R+ + +P T+ +F  F +LS  SA     +VK HG
Sbjct: 7   DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60

Query: 66  KKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTP 125
           KKV  +L +A  H+DD+    + LS+LH  KL VDP NFKLL + L+  LA H   EFTP
Sbjct: 61  KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120

Query: 126 EVQASWQKMVTAVASALSSRY 146
            V AS  K + +V++ L+S+Y
Sbjct: 121 AVHASLDKFLASVSTVLTSKY 141


>gi|4885397 hemoglobin, zeta [Homo sapiens]
          Length = 142

 Score =  110 bits (274), Expect = 6e-25
 Identities = 56/144 (38%), Positives = 87/144 (60%), Gaps = 8/144 (5%)

Query: 5   TEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVK 62
           T+ ++  I S+W K++ +    G ETL RL + +P T+ +F  F          G+ +++
Sbjct: 4   TKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQLR 57

Query: 63  AHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKE 122
           AHG KV+ ++GDA K +DD+ G  ++LSELH   L VDP NFKLL + L+  LA  F  +
Sbjct: 58  AHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPAD 117

Query: 123 FTPEVQASWQKMVTAVASALSSRY 146
           FT E  A+W K ++ V+S L+ +Y
Sbjct: 118 FTAEAHAAWDKFLSVVSSVLTEKY 141


>gi|4885395 theta 1 globin [Homo sapiens]
          Length = 142

 Score = 94.0 bits (232), Expect = 4e-20
 Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 8/142 (5%)

Query: 7   EDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAH 64
           ED+A + +LW K+  NV     E L R  + +P T+ +F      S      G+ +V+AH
Sbjct: 6   EDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYF------SHLDLSPGSSQVRAH 59

Query: 65  GKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFT 124
           G+KV  +L  A + LDDL    + LS LH  +L VDP +F+LLG+ L+  LA H+  +F+
Sbjct: 60  GQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFS 119

Query: 125 PEVQASWQKMVTAVASALSSRY 146
           P +QAS  K ++ V SAL S Y
Sbjct: 120 PALQASLDKFLSHVISALVSEY 141


>gi|51510893 hemoglobin mu chain [Homo sapiens]
          Length = 141

 Score = 92.8 bits (229), Expect = 9e-20
 Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 8/142 (5%)

Query: 7   EDKATITSLWGKVNVEDA--GGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAH 64
           +++A I  +W  +   +A  G E L RL  VYP T+ +F        A+ ++      +H
Sbjct: 5   QERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLL------SH 58

Query: 65  GKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFT 124
           G+++L ++G A +H+D+L+   + L++LH   L VDP NF LL      VLA H   EFT
Sbjct: 59  GQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDEFT 118

Query: 125 PEVQASWQKMVTAVASALSSRY 146
            ++QA+W K +T VA  L+ +Y
Sbjct: 119 VQMQAAWDKFLTGVAVVLTEKY 140


>gi|19549331 cytoglobin [Homo sapiens]
          Length = 190

 Score = 73.6 bits (179), Expect = 6e-14
 Identities = 38/147 (25%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 5   TEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVK 62
           +E ++  + ++W ++  N ED G   L R  V +P  +++F  F ++     +  +P+++
Sbjct: 20  SEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLR 79

Query: 63  AHGKKVLTSLGDATKHLDD---LKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHF 119
            H  +V+ +L    ++L D   +    A + + H  K  V+P  FK+L  V++ V+A  F
Sbjct: 80  KHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEF 139

Query: 120 GKEFTPEVQASWQKMVTAVASALSSRY 146
             +F PE Q +W K+   + S +++ Y
Sbjct: 140 ASDFPPETQRAWAKLRGLIYSHVTAAY 166


>gi|44955888 myoglobin [Homo sapiens]
          Length = 154

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 12  ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69
           + ++WGKV  ++   G E L RL   +P T   FD F +L S   +  +  +K HG  VL
Sbjct: 11  VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70

Query: 70  TSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129
           T+LG   K     +     L++ H  K  +  +  + +   ++ VL      +F  + Q 
Sbjct: 71  TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130

Query: 130 SWQKMVTAVASALSSRY 146
           +  K +      ++S Y
Sbjct: 131 AMNKALELFRKDMASNY 147


>gi|44955885 myoglobin [Homo sapiens]
          Length = 154

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 12  ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69
           + ++WGKV  ++   G E L RL   +P T   FD F +L S   +  +  +K HG  VL
Sbjct: 11  VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70

Query: 70  TSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129
           T+LG   K     +     L++ H  K  +  +  + +   ++ VL      +F  + Q 
Sbjct: 71  TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130

Query: 130 SWQKMVTAVASALSSRY 146
           +  K +      ++S Y
Sbjct: 131 AMNKALELFRKDMASNY 147


>gi|4885477 myoglobin [Homo sapiens]
          Length = 154

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 12  ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69
           + ++WGKV  ++   G E L RL   +P T   FD F +L S   +  +  +K HG  VL
Sbjct: 11  VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70

Query: 70  TSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129
           T+LG   K     +     L++ H  K  +  +  + +   ++ VL      +F  + Q 
Sbjct: 71  TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130

Query: 130 SWQKMVTAVASALSSRY 146
           +  K +      ++S Y
Sbjct: 131 AMNKALELFRKDMASNY 147


>gi|10864065 neuroglobin [Homo sapiens]
          Length = 151

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 50  SSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKGT---FAQLSELHCDKLHVDPENFKL 106
           SS    + +P+   H +KV+  +  A  +++DL       A L   H   + V   +F  
Sbjct: 50  SSPEDCLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKH-RAVGVKLSSFST 108

Query: 107 LGNVLVTVLAIHFGKEFTPEVQASWQKMVTAVASALS 143
           +G  L+ +L    G  FTP  +A+W ++  AV  A+S
Sbjct: 109 VGESLLYMLEKCLGPAFTPATRAAWSQLYGAVVQAMS 145


>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
          Length = 382

 Score = 33.1 bits (74), Expect = 0.086
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 43  FDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKGTFAQLSELH 93
           F SFG++S A  +M   + K  G    +S  +ATK +D++ G       LH
Sbjct: 322 FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLH 372


>gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens]
          Length = 2527

 Score = 30.0 bits (66), Expect = 0.72
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 49  LSSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLG 108
           L++ +  +GNP ++  G KV++S+      L+ L    A  S LH  +++ D +  + LG
Sbjct: 547 LAALNRFIGNPGIQKCGLKVISSIVHFPDALEMLSLEGAMDSVLHTLQMYPDDQEIQCLG 606

Query: 109 NVLVTVL 115
             L+  L
Sbjct: 607 LSLIGYL 613


>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
          Length = 1586

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 80  DDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
           ++LK    Q+SEL    L +  EN  LL N+    LA H G
Sbjct: 336 EELKSARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLG 376


>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
          Length = 1082

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 23/128 (17%)

Query: 8   DKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKK 67
           D    T+  G V +++ G  T G+LL +    Q F  S   L+  S+ + + ++ + G +
Sbjct: 229 DGQPATTFLGSVELQE-GEATAGQLLDIL---QAFGVSAPKLAWLSSSLPSERLGSVGPQ 284

Query: 68  VLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLG---NVLVTVLAIHFG--KE 122
                         L+ T   L+ELHC     DPE    LG   ++L  +  +H G    
Sbjct: 285 --------------LRATCPLLAELHCLPGRTDPEPPAYLGQYESILDALFRLHGGPSSH 330

Query: 123 FTPEVQAS 130
             PE++A+
Sbjct: 331 LVPELRAA 338


>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
          Length = 1082

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 23/128 (17%)

Query: 8   DKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKK 67
           D    T+  G V +++ G  T G+LL +    Q F  S   L+  S+ + + ++ + G +
Sbjct: 229 DGQPATTFLGSVELQE-GEATAGQLLDIL---QAFGVSAPKLAWLSSSLPSERLGSVGPQ 284

Query: 68  VLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLG---NVLVTVLAIHFG--KE 122
                         L+ T   L+ELHC     DPE    LG   ++L  +  +H G    
Sbjct: 285 --------------LRATCPLLAELHCLPGRTDPEPPAYLGQYESILDALFRLHGGPSSH 330

Query: 123 FTPEVQAS 130
             PE++A+
Sbjct: 331 LVPELRAA 338


>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
          Length = 1082

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 23/128 (17%)

Query: 8   DKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKK 67
           D    T+  G V +++ G  T G+LL +    Q F  S   L+  S+ + + ++ + G +
Sbjct: 229 DGQPATTFLGSVELQE-GEATAGQLLDIL---QAFGVSAPKLAWLSSSLPSERLGSVGPQ 284

Query: 68  VLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLG---NVLVTVLAIHFG--KE 122
                         L+ T   L+ELHC     DPE    LG   ++L  +  +H G    
Sbjct: 285 --------------LRATCPLLAELHCLPGRTDPEPPAYLGQYESILDALFRLHGGPSSH 330

Query: 123 FTPEVQAS 130
             PE++A+
Sbjct: 331 LVPELRAA 338


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 40  QRFFDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKGTFAQLSELH 93
           ++ F  FG ++SA  +M   + K  G    +S  +ATK + ++ G       L+
Sbjct: 311 RKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 43  FDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKGTFAQLSELH 93
           F  FG ++SA  +M   + K  G    +S  +ATK + ++ G       L+
Sbjct: 314 FSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364


>gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens]
          Length = 678

 Score = 26.9 bits (58), Expect = 6.1
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 17  GKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK-VKAHGKKVLTSLGDA 75
           G  N ++    T+G     +  +Q +  SF NL++ S ++G+ K  ++  K    S G A
Sbjct: 490 GHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPKGTEISSGAA 549

Query: 76  TKHLDDLKG 84
           +K+   L G
Sbjct: 550 SKNQTSLLG 558


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 43  FDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKG 84
           F  FG+++SA  ++ + + K  G    +S  +ATK + ++ G
Sbjct: 314 FSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 43  FDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKG 84
           F  FG+++SA  ++ + + K  G    +S  +ATK + ++ G
Sbjct: 314 FSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 43  FDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKG 84
           F  FG+++SA  ++ + + K  G    +S  +ATK + ++ G
Sbjct: 314 FSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355


>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
           sapiens]
          Length = 370

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 43  FDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDATKHLDDLKG 84
           F SFG++S    +    + K  G    +S  DATK + ++ G
Sbjct: 313 FSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNG 354


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,177,350
Number of Sequences: 37866
Number of extensions: 188205
Number of successful extensions: 441
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 28
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.