Guide to the Human Genome
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Name: HBG1 Sequence: fasta or formatted (147aa) NCBI GI: 28302131
Description:

A-gamma globin

Referenced in:

Oxygen Sensing and Hemoglobin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         12           1
 C cysteine            0.7          1           1
 D aspartate           5.4          8           2
 E glutamate           5.4          8           2
 F phenylalanine       5.4          8           2
 G glycine             8.2         12           2
 H histidine           4.8          7           1
 I isoleucine          2.0          3           1
 K lysine              8.2         12           2
 L leucine            11.6         17           2
 M methionine          2.0          3           1
 N asparagine          3.4          5           1
 P proline             2.7          4           1
 Q glutamine           2.7          4           1
 R arginine            2.0          3           1
 S serine              7.5         11           2
 T threonine           7.5         11           1
 V valine              8.8         13           2
 W tryptophan          2.0          3           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   A-gamma globin 
HBG2                  0.985   G-gamma globin 
HBE1                  0.811   epsilon globin 
HBB                   0.742   beta globin 
HBD                   0.727   delta globin 
HBA1                  0.309   alpha 1 globin 
HBA2                  0.309   alpha 2 globin 
HBZ                   0.309   hemoglobin, zeta 
HBQ1                  0.251   theta 1 globin 
HBM                   0.247   hemoglobin mu chain 
CYGB                  0.178   cytoglobin 
MB                    0.113   myoglobin 
MB                    0.113   myoglobin 
MB                    0.113   myoglobin 
NGB                   0.055   neuroglobin 
PABPC5                0.029   poly(A) binding protein, cytoplasmic 5 
LRRK2                 0.018   leucine-rich repeat kinase 2 
KIAA0802              0.011   hypothetical protein LOC23255 
ZNF385C               0.011   PREDICTED: zinc finger protein 385C 
ZNF385C               0.011   PREDICTED: zinc finger protein 385C 
ZNF385C               0.011   PREDICTED: zinc finger protein 385C 
PABPC3                0.011   poly(A) binding protein, cytoplasmic 3 
PABPC1                0.011   poly(A) binding protein, cytoplasmic 1 
RAVER2                0.007   ribonucleoprotein, PTB-binding 2 
PABPC4                0.007   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.007   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.007   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC4L               0.007   poly(A) binding protein, cytoplasmic 4-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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