Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HBQ1 Sequence: fasta or formatted (142aa) NCBI GI: 4885395
Description:

theta 1 globin

Referenced in:

Oxygen Sensing and Hemoglobin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         19           1
 C cysteine            1.4          2           1
 D aspartate           5.6          8           2
 E glutamate           3.5          5           1
 F phenylalanine       4.2          6           1
 G glycine             4.2          6           1
 H histidine           5.6          8           1
 I isoleucine          0.7          1           1
 K lysine              3.5          5           2
 L leucine            17.6         25           2
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline             4.2          6           1
 Q glutamine           3.5          5           1
 R arginine            5.6          8           1
 S serine             10.6         15           2
 T threonine           4.2          6           2
 V valine              7.0         10           1
 W tryptophan          0.7          1           1
 Y tyrosine            2.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   theta 1 globin 
HBA1                  0.602   alpha 1 globin 
HBA2                  0.602   alpha 2 globin 
HBZ                   0.480   hemoglobin, zeta 
HBM                   0.340   hemoglobin mu chain 
HBG2                  0.273   G-gamma globin 
HBD                   0.273   delta globin 
HBB                   0.270   beta globin 
HBG1                  0.270   A-gamma globin 
HBE1                  0.270   epsilon globin 
CYGB                  0.164   cytoglobin 
MB                    0.105   myoglobin 
MB                    0.105   myoglobin 
MB                    0.105   myoglobin 
TAF6L                 0.047   TAF6-like RNA polymerase II 
NGB                   0.027   neuroglobin 
LOC100288041          0.020   PREDICTED: hypothetical protein XP_002342072 
GLB1                  0.012   galactosidase, beta 1 isoform b 
GLB1                  0.012   galactosidase, beta 1 isoform a preproprotein [Homo...
LOC100292054          0.012   PREDICTED: hypothetical protein XP_002345326 
LOC100290779          0.012   PREDICTED: hypothetical protein XP_002346943 
BPIL3                 0.008   bactericidal/permeability-increasing protein-like 3 ...
TTC21A                0.008   tetratricopeptide repeat domain 21A isoform 1 [Homo...
USP34                 0.008   ubiquitin specific protease 34 
LOC100293725          0.004   PREDICTED: hypothetical protein 
WDR81                 0.004   PREDICTED: WD repeat domain 81 
LOC100291395          0.004   PREDICTED: hypothetical protein XP_002348022 
WDR81                 0.004   PREDICTED: WD repeat domain 81 
LOC100288114          0.004   PREDICTED: hypothetical protein XP_002343700 
WDR81                 0.004   PREDICTED: WD repeat domain 81 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press