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Search of human proteins with 28212220
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens] 398 e-111
gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens] 393 e-110
gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens] 388 e-108
gi|4505183 CD99 antigen isoform a precursor [Homo sapiens] 54 6e-08
gi|171543879 CD99 antigen isoform b precursor [Homo sapiens] 54 9e-08
gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens] 49 2e-06
gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens] 44 6e-05
gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo sapi... 44 7e-05
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 40 0.001
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 39 0.002
gi|33356148 formin-like 1 [Homo sapiens] 38 0.004
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 38 0.005
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 38 0.005
gi|32307177 forkhead box G1 [Homo sapiens] 38 0.005
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 38 0.005
gi|157743259 H6 family homeobox 3 [Homo sapiens] 37 0.007
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 37 0.007
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 37 0.007
gi|122056628 prion protein preproprotein [Homo sapiens] 37 0.009
gi|122056625 prion protein preproprotein [Homo sapiens] 37 0.009
gi|122056623 prion protein preproprotein [Homo sapiens] 37 0.009
gi|34335270 prion protein preproprotein [Homo sapiens] 37 0.009
gi|4506113 prion protein preproprotein [Homo sapiens] 37 0.009
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 37 0.009
gi|119395716 forkhead box C1 [Homo sapiens] 37 0.009
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 37 0.009
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 37 0.009
gi|157168329 formin 1 [Homo sapiens] 37 0.012
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 37 0.012
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 37 0.012
>gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens]
Length = 180
Score = 398 bits (1022), Expect = e-111
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
Query: 61 SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS
Sbjct: 61 SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
Query: 121 DNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV 180
DNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV
Sbjct: 121 DNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV 180
>gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens]
Length = 181
Score = 393 bits (1010), Expect = e-110
Identities = 180/181 (99%), Positives = 180/181 (99%), Gaps = 1/181 (0%)
Query: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
Query: 61 SGGNIYPRPKPRPQPQPGNSGNSGG-YFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN 119
SGGNIYPRPKPRPQPQPGNSGNSGG YFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
Sbjct: 61 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN 120
Query: 120 SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 179
SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN
Sbjct: 121 SDNTHGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 180
Query: 180 V 180
V
Sbjct: 181 V 181
>gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens]
Length = 195
Score = 388 bits (996), Expect = e-108
Identities = 180/195 (92%), Positives = 180/195 (92%), Gaps = 15/195 (7%)
Query: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
Query: 61 SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS
Sbjct: 61 SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
Query: 121 DNTH---------------GGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKL 165
DNTH GGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKL
Sbjct: 121 DNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKL 180
Query: 166 NNRRNCFRTHEPENV 180
NNRRNCFRTHEPENV
Sbjct: 181 NNRRNCFRTHEPENV 195
>gi|4505183 CD99 antigen isoform a precursor [Homo sapiens]
Length = 185
Score = 54.3 bits (129), Expect = 6e-08
Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 32/156 (20%)
Query: 25 FDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDS---GGNIYPRP----KPRPQPQP 77
FDL+DAL D E KKP + PK KP + D+ G N PRP KP P P P
Sbjct: 26 FDLSDALPDNE-NKKPTA--IPK-KPSAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNP 81
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEG 137
N +S G F+D D DG +GG G G S G S G + +
Sbjct: 82 -NHPSSSGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEGEEADAP------ 124
Query: 138 NMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFR 173
++ IV VVV + GA +S+ ++ CF+
Sbjct: 125 ----GVIPGIVGAVVVAVAGAISSFIAYQKKKLCFK 156
>gi|171543879 CD99 antigen isoform b precursor [Homo sapiens]
Length = 169
Score = 53.5 bits (127), Expect = 9e-08
Identities = 46/150 (30%), Positives = 61/150 (40%), Gaps = 45/150 (30%)
Query: 24 DFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNS 83
DFDL DA+ D E N D P+P NP PKP P P P N +S
Sbjct: 36 DFDLGDAVVDGE-----NDD----------PRPPNP---------PKPMPNPNP-NHPSS 70
Query: 84 GGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEGNMVAKI 143
G F+D D DG +GG G G S G S G + + +
Sbjct: 71 SGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEGEEADAP----------GV 110
Query: 144 VSPIVSVVVVTLLGAAASYFKLNNRRNCFR 173
+ IV VVV + GA +S+ ++ CF+
Sbjct: 111 IPGIVGAVVVAVAGAISSFIAYQKKKLCFK 140
>gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens]
Length = 213
Score = 49.3 bits (116), Expect = 2e-06
Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 40/189 (21%)
Query: 7 LPCLAFLCFLMHARGQRDFD---LADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGG 63
L CLAF + RG DFD L DA+ + K+ + + K P +
Sbjct: 9 LVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQRWNHVTTTTKRPVTTRA------- 61
Query: 64 NIYPRPKPRPQPQPGNSGNSGGYFNDV-DRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDN 122
P GN + +D DRDDGR P GGGG+S D
Sbjct: 62 ---------PANTLGNDFDLADALDDRNDRDDGRRKPI--------AGGGGFSDKDLEDI 104
Query: 123 THGGDHHSTYGNPEGN----------MVAK--IVSPIVSVVVVTLLGAAASYFKLNNRRN 170
GG++ G +G MVA+ ++ + S + + L+GA +SY ++
Sbjct: 105 VGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKF 164
Query: 171 CFRTHEPEN 179
CF + N
Sbjct: 165 CFSIQQGLN 173
>gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens]
Length = 190
Score = 44.3 bits (103), Expect = 6e-05
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 49/182 (26%)
Query: 7 LPCLAFLCFLMHARGQRDFD---LADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGG 63
L CLAF + RG DFD L DA+ + K+ + D+ D+
Sbjct: 9 LVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDL--------------ADALD 54
Query: 64 NIYPRPKPRPQPQPGNSGNSGGYFNDVDRDD----GRYPPRPRPRPPAGGGGGGYSSYGN 119
+ R R +P G GG F+D D +D G Y +P G G G YG+
Sbjct: 55 DRNDRDDGRRKPIAG-----GGGFSDKDLEDIVGGGEY------KPDKGKGDG---RYGS 100
Query: 120 SDNTHGGDHHSTYGNPEGNMVAK--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEP 177
+D +P MVA+ ++ + S + + L+GA +SY ++ CF +
Sbjct: 101 ND------------DPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQG 148
Query: 178 EN 179
N
Sbjct: 149 LN 150
>gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo
sapiens]
Length = 262
Score = 43.9 bits (102), Expect = 7e-05
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 31/168 (18%)
Query: 26 DLADALDDPEPTKKPNSDIYPKPKPPYYPQPE-NPDSGGNIYPRPKPRPQPQPGNSGNSG 84
DLADALDD + ++ KP + N + P P GN +
Sbjct: 72 DLADALDDQDDGRR---------KPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFDLA 122
Query: 85 GYFND-VDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYG---------- 133
+D DRDDGR P GGGG+S D GG++ G
Sbjct: 123 DALDDRNDRDDGRRKPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSND 174
Query: 134 NPEGNMVAK--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 179
+P MVA+ ++ + S + + L+GA +SY ++ CF + N
Sbjct: 175 DPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLN 222
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 39.7 bits (91), Expect = 0.001
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 54 PQPENPDSGGNIYPRPKPRPQPQPGNSGNS-----GGYFNDVDRDDGRY-------PPRP 101
P P++PD+ PRP+ RP+P G+ S G F D R R+ P P
Sbjct: 438 PSPDSPDAAPEARPRPRRRPRPPAGSPARSPAHSLGLNFGDAARQTPRHGLSALSAPGLP 497
Query: 102 RPRPPAGGG 110
P PAG G
Sbjct: 498 GPGQPAGPG 506
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 38.9 bits (89), Expect = 0.002
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 37 TKKPNSDIYPKPK--PPYYPQPENPDS-------GGNIYPRPK-------PRPQPQPG-N 79
+K +S+ +P+ PP YP P + G N P P P+ P P N
Sbjct: 305 SKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHN 364
Query: 80 SGNSGGYFNDVDRDDGRYPPRPRPRPPA----GGGGGGYSSYGNSDNTH 124
SG Y V P +PRPP+ GGGGGG G+S +++
Sbjct: 365 SGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSN 413
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 38.1 bits (87), Expect = 0.004
Identities = 25/77 (32%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 34 PEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRD 93
P P + P S P P P+P P P P P P PG
Sbjct: 552 PSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGT-------------- 597
Query: 94 DGRYPPRPRPRPPAGGG 110
DG PP P P PP GG
Sbjct: 598 DGPVPPPPPPPPPPPGG 614
Score = 32.3 bits (72), Expect = 0.23
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 34 PEPTKKPN--SDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVD 91
PEP P D+ P P PP P P + G + P P P P P PG ++ G
Sbjct: 572 PEPPPAPPLPGDLPPPPPPP----PPPPGTDGPV-PPPPPPPPPPPGGPPDALG------ 620
Query: 92 RDDGRYPPRPRPRPP 106
R D P + + P
Sbjct: 621 RRDSELGPGVKAKKP 635
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/90 (30%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 29 DALDDPEPTKKPNSDIYP--KPKPPYYPQPENPDSG----GNIYPRPKPRPQPQPGNSGN 82
DA PT P+ D+ P +P P P P P G P P+ P PG+
Sbjct: 515 DAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEP 574
Query: 83 SGGYFNDVDRDDGRYPPRPRPRPPAGGGGG 112
G PP P P PP G G
Sbjct: 575 P-----PAPPLPGDLPPPPPPPPPPPGTDG 599
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 37.7 bits (86), Expect = 0.005
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 37 TKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPG-NSGNSGGYFNDVDRDDG 95
T P Y P+P Y P N Y P P P P P N G+ GGY +
Sbjct: 642 TSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGGY------NPA 695
Query: 96 RYPPRPRP 103
Y P P P
Sbjct: 696 PYTPPPPP 703
Score = 32.0 bits (71), Expect = 0.29
Identities = 30/109 (27%), Positives = 33/109 (30%), Gaps = 25/109 (22%)
Query: 34 PEPTKKPNSDIYPK--PKPPYYPQPENP--------------DSGGNIYPRPKPRPQPQP 77
P P + P P+ P PP Y NP S P PQP
Sbjct: 596 PPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVSSYSPPQP 655
Query: 78 GNSG---NSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNT 123
S N GGY G P P P PP G Y Y + T
Sbjct: 656 SYSQPPYNQGGY------SQGYTAPPPPPPPPPAYNYGSYGGYNPAPYT 698
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 37.7 bits (86), Expect = 0.005
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 37 TKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPG-NSGNSGGYFNDVDRDDG 95
T P Y P+P Y P N Y P P P P P N G+ GGY +
Sbjct: 742 TSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGGY------NPA 795
Query: 96 RYPPRPRP 103
Y P P P
Sbjct: 796 PYTPPPPP 803
Score = 32.0 bits (71), Expect = 0.29
Identities = 30/109 (27%), Positives = 33/109 (30%), Gaps = 25/109 (22%)
Query: 34 PEPTKKPNSDIYPK--PKPPYYPQPENP--------------DSGGNIYPRPKPRPQPQP 77
P P + P P+ P PP Y NP S P PQP
Sbjct: 696 PPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVSSYSPPQP 755
Query: 78 GNSG---NSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNT 123
S N GGY G P P P PP G Y Y + T
Sbjct: 756 SYSQPPYNQGGY------SQGYTAPPPPPPPPPAYNYGSYGGYNPAPYT 798
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 37.7 bits (86), Expect = 0.005
Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 46 PKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRP 105
P P+PP PQ + P P P P PQP + + +D PP P P P
Sbjct: 61 PAPQPPPPPQQQQPP--------PPPPPAPQPPQTRGAPAADDDKGPQQLLLPPPPPPPP 112
Query: 106 PAGGGGGGYSSYGNSDNTHGG 126
A G G GG
Sbjct: 113 AAALDGAKADGLGGKGEPGGG 133
Score = 27.3 bits (59), Expect = 7.3
Identities = 26/106 (24%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 34 PEPTKKPNSDIYPKPKPPYYPQP--------ENPDSGGNIYPRPKPRPQPQ----PGNSG 81
P+P P P P PP PQP + D G P P P P G
Sbjct: 63 PQPPPPPQQQQPPPPPPP-APQPPQTRGAPAADDDKGPQQLLLPPPPPPPPAAALDGAKA 121
Query: 82 NSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGD 127
+ G + G P G G GG G + G+
Sbjct: 122 DGLGGKGEPGGGPGELAPVGPDEKEKGAGAGGEEKKGAGEGGKDGE 167
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 37.7 bits (86), Expect = 0.005
Identities = 37/135 (27%), Positives = 42/135 (31%), Gaps = 34/135 (25%)
Query: 34 PEPTKKPNSDIY------PKPKPPYYPQPENPDSGGN------IYPRPKPRPQPQPGNSG 81
P PT P + P P PP P P G P P P P+ PG G
Sbjct: 147 PGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGG 206
Query: 82 NSGGYFNDVDR---DDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTY------ 132
GG + G P P+PP GGG + G HH Y
Sbjct: 207 PKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGG---------EPRGGRQHHPPYHQQHHQ 257
Query: 133 ----GNPEGNMVAKI 143
G P G KI
Sbjct: 258 GPPPGGPGGRSEEKI 272
Score = 28.5 bits (62), Expect = 3.3
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 34 PEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQP 77
P P + P+ PP P P P P P+P Q QP
Sbjct: 62 PPPPHQQQQQPPPQQPPPQQPPPHQPP------PHPQPHQQQQP 99
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 37.4 bits (85), Expect = 0.007
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 54 PQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRP 105
P+P PD+ G +P+P P P P + N ++ D R PP+P+P P
Sbjct: 2 PEP-GPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPP 52
Score = 34.7 bits (78), Expect = 0.045
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 31 LDDPEPTKKPNSDIYPKPKPPYYPQP-ENPDSGGNI----YPRPKPRPQPQP 77
+ +P P + P+P PP P P E+P S N+ + RP P+PQP P
Sbjct: 1 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPP 52
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 37.4 bits (85), Expect = 0.007
Identities = 31/109 (28%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 38 KKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRY 97
+ P Y P+P P P SGG I+ Q G+ G GG + G Y
Sbjct: 755 RNPQMPQYSSPQPGSALSPRQP-SGGQIHTGMGSYQQNSMGSYGPQGGQYGP----QGGY 809
Query: 98 PPRPRPRP------PAGGGGGGYSSYGNSDNTHGGDHHSTYGN-PEGNM 139
P +P P+ G GG + G HG YG P G M
Sbjct: 810 PRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGTLPPGRM 858
Score = 30.8 bits (68), Expect = 0.66
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 40 PNSDIYPKPKPPY---YPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGR 96
PN YP P P Y P+ P SG KP P S +S + R
Sbjct: 217 PNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQ------R 270
Query: 97 YPPRPRPRPPAGGGG 111
+ P A GGG
Sbjct: 271 FGAMGGGGPSAAGGG 285
Score = 29.3 bits (64), Expect = 1.9
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 80 SGNSGGYFNDVDRDDGRYPPRPR-----PRPPAGGGGGGYSSYG 118
SG G D+ +G PRP PP GGGGG G
Sbjct: 90 SGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVG 133
Score = 27.7 bits (60), Expect = 5.6
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 34 PEPTKKPNSDIYPKPKPPY-YPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGY 86
P P+++ + +P+ +PPY PQ ++P Y + +P+ QP P Y
Sbjct: 533 PYPSQQSTTQQHPQSQPPYSQPQAQSP------YQQQQPQ-QPAPSTLSQQAAY 579
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 37.4 bits (85), Expect = 0.007
Identities = 31/109 (28%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 38 KKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRY 97
+ P Y P+P P P SGG I+ Q G+ G GG + G Y
Sbjct: 755 RNPQMPQYSSPQPGSALSPRQP-SGGQIHTGMGSYQQNSMGSYGPQGGQYGP----QGGY 809
Query: 98 PPRPRPRP------PAGGGGGGYSSYGNSDNTHGGDHHSTYGN-PEGNM 139
P +P P+ G GG + G HG YG P G M
Sbjct: 810 PRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGTLPPGRM 858
Score = 30.8 bits (68), Expect = 0.66
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 40 PNSDIYPKPKPPY---YPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGR 96
PN YP P P Y P+ P SG KP P S +S + R
Sbjct: 217 PNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQ------R 270
Query: 97 YPPRPRPRPPAGGGG 111
+ P A GGG
Sbjct: 271 FGAMGGGGPSAAGGG 285
Score = 29.3 bits (64), Expect = 1.9
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 80 SGNSGGYFNDVDRDDGRYPPRPR-----PRPPAGGGGGGYSSYG 118
SG G D+ +G PRP PP GGGGG G
Sbjct: 90 SGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVG 133
Score = 27.7 bits (60), Expect = 5.6
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 34 PEPTKKPNSDIYPKPKPPY-YPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGY 86
P P+++ + +P+ +PPY PQ ++P Y + +P+ QP P Y
Sbjct: 533 PYPSQQSTTQQHPQSQPPYSQPQAQSP------YQQQQPQ-QPAPSTLSQQAAY 579
>gi|122056628 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 70 KPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGG--- 126
K RP+P N+G S R G+ P PP GGGG G G HGG
Sbjct: 23 KKRPKPGGWNTGGS--------RYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWG 74
Query: 127 -DHHSTYGNPEG 137
H +G P G
Sbjct: 75 QPHGGGWGQPHG 86
>gi|122056625 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 70 KPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGG--- 126
K RP+P N+G S R G+ P PP GGGG G G HGG
Sbjct: 23 KKRPKPGGWNTGGS--------RYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWG 74
Query: 127 -DHHSTYGNPEG 137
H +G P G
Sbjct: 75 QPHGGGWGQPHG 86
>gi|122056623 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 70 KPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGG--- 126
K RP+P N+G S R G+ P PP GGGG G G HGG
Sbjct: 23 KKRPKPGGWNTGGS--------RYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWG 74
Query: 127 -DHHSTYGNPEG 137
H +G P G
Sbjct: 75 QPHGGGWGQPHG 86
>gi|34335270 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 70 KPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGG--- 126
K RP+P N+G S R G+ P PP GGGG G G HGG
Sbjct: 23 KKRPKPGGWNTGGS--------RYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWG 74
Query: 127 -DHHSTYGNPEG 137
H +G P G
Sbjct: 75 QPHGGGWGQPHG 86
>gi|4506113 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 70 KPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGG--- 126
K RP+P N+G S R G+ P PP GGGG G G HGG
Sbjct: 23 KKRPKPGGWNTGGS--------RYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWG 74
Query: 127 -DHHSTYGNPEG 137
H +G P G
Sbjct: 75 QPHGGGWGQPHG 86
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 37.0 bits (84), Expect = 0.009
Identities = 28/98 (28%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 46 PKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRP-- 103
P+ P++ P +P GG + P P P P G GG PP P P
Sbjct: 673 PRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGG---------NEPPPPPPPFR 723
Query: 104 --RPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEGNM 139
R GGG G GG H + P G M
Sbjct: 724 GARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGM 761
Score = 35.8 bits (81), Expect = 0.020
Identities = 32/110 (29%), Positives = 36/110 (32%), Gaps = 14/110 (12%)
Query: 46 PKPKPPYYPQPENPDSGGNIYPRPKP----------RPQPQPGNS-GNSGGYFNDVDRDD 94
P P PP+ GG R P RP PG GNS G+
Sbjct: 716 PPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGG 775
Query: 95 GR---YPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEGNMVA 141
G + P P GGGGG G GG H + P G M A
Sbjct: 776 GMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGA 825
Score = 31.6 bits (70), Expect = 0.38
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 62 GGNIYPRPKPRPQPQPGNSGNSGGYFNDVD---RDDGRYPP--RPRPRPPAGGGGGGYSS 116
GG++ RP PG+ G G +DV D R PP R G GGGG+
Sbjct: 836 GGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRG 895
Query: 117 YGNSDNTHGGD 127
+ + ++HGGD
Sbjct: 896 H-DGGHSHGGD 905
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 20 RGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGN 79
R +R F DA+ D E +K + P P P P P+ P P+P P
Sbjct: 169 RRRRRFKKKDAVKDKE--EKDRLHLKEPPPPGRQPPPAPPEQADGNAPGPQPPPVR---- 222
Query: 80 SGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGG 113
D+ ++G P P+P PA G G
Sbjct: 223 -------IQDIKTENGTCPSPPQPLSPAAALGSG 249
Score = 28.1 bits (61), Expect = 4.3
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPA------GGGGGGYSSYGNSDNTHGGDHHST 131
G G +GG D D PP + GGGGGG G+ H G S
Sbjct: 414 GAPGGAGGSAVDDPLPDYSLPPVTSSSSSSLSHGGGGGGGGGGQEAGHHPAAHQGRLTSW 473
Query: 132 YGNPEGNMVAKIVS 145
Y N G + + S
Sbjct: 474 YLNQAGGDLGHLAS 487
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 37.0 bits (84), Expect = 0.009
Identities = 29/95 (30%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 41 NSDIYPKPKPPYY--PQPENPDSGGNIYP-RPKPRPQPQPGNSGNSGGYFNDVDRDDGRY 97
+ D YP P P Y PQP P YP P P+P QP G G G Y
Sbjct: 10 SGDNYPPPNPGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGY 69
Query: 98 PPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTY 132
P P P+ G Y GG Y
Sbjct: 70 PQGPYPQGGYPQGPYPQEGYPQGPYPQGGYPQGPY 104
Score = 34.7 bits (78), Expect = 0.045
Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 33 DPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQP--QPG---------NSG 81
D P P P+P P Y QP P G YP+P +P P QPG G
Sbjct: 12 DNYPPPNPGYPGGPQPPMPPYAQPPYP---GAPYPQPPFQPSPYGQPGYPHGPSPYPQGG 68
Query: 82 NSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
G + G YP P+ P GG Y S
Sbjct: 69 YPQGPYPQGGYPQGPYPQEGYPQGPYPQGGYPQGPYPQS 107
Score = 27.3 bits (59), Expect = 7.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 45 YPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSG--GYFNDVD 91
YP+ P P P NP ++P P PQ GN G Y+++ D
Sbjct: 99 YPQGPYPQSPFPPNPYGQPQVFPGQDP-DSPQHGNYQEEGPPSYYDNQD 146
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 37.0 bits (84), Expect = 0.009
Identities = 29/95 (30%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 41 NSDIYPKPKPPYY--PQPENPDSGGNIYP-RPKPRPQPQPGNSGNSGGYFNDVDRDDGRY 97
+ D YP P P Y PQP P YP P P+P QP G G G Y
Sbjct: 10 SGDNYPPPNPGYPGGPQPPMPPYAQPPYPGAPYPQPPFQPSPYGQPGYPHGPSPYPQGGY 69
Query: 98 PPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTY 132
P P P+ G Y GG Y
Sbjct: 70 PQGPYPQGGYPQGPYPQEGYPQGPYPQGGYPQGPY 104
Score = 34.7 bits (78), Expect = 0.045
Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 33 DPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQP--QPG---------NSG 81
D P P P+P P Y QP P G YP+P +P P QPG G
Sbjct: 12 DNYPPPNPGYPGGPQPPMPPYAQPPYP---GAPYPQPPFQPSPYGQPGYPHGPSPYPQGG 68
Query: 82 NSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
G + G YP P+ P GG Y S
Sbjct: 69 YPQGPYPQGGYPQGPYPQEGYPQGPYPQGGYPQGPYPQS 107
Score = 27.3 bits (59), Expect = 7.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 45 YPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSG--GYFNDVD 91
YP+ P P P NP ++P P PQ GN G Y+++ D
Sbjct: 99 YPQGPYPQSPFPPNPYGQPQVFPGQDP-DSPQHGNYQEEGPPSYYDNQD 146
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 36.6 bits (83), Expect = 0.012
Identities = 25/73 (34%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 34 PEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRD 93
P P P S P P PP P P P S P P P P P N GG
Sbjct: 667 PAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGG-------- 718
Query: 94 DGRYPPRPRPRPP 106
P P P PP
Sbjct: 719 -----PPPAPPPP 726
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 34 PEPTKKPNSDIYPKPKPP----YYPQPENPDSGGNIYPRPKPRPQPQPG 78
P P P+S P P PP P P NP P P P P PG
Sbjct: 687 PPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPPPPPG 735
Score = 26.9 bits (58), Expect = 9.5
Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 24/93 (25%)
Query: 26 DLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPR------------PKPRP 73
D+ AL E P P P P P G++ P P P P
Sbjct: 626 DIHAALQPMEGMASNQQKALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPP 685
Query: 74 QPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPP 106
P P +S G PP P P PP
Sbjct: 686 PPPPLPPPSSAG------------PPPPPPPPP 706
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 36.6 bits (83), Expect = 0.012
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 69 PKPRPQPQPGNSGNSGGYFNDVDRDDGR--YPP-----RPRPRPPAGG 109
P RP+P G S +GG + DRDDGR + P RP P P A G
Sbjct: 460 PAARPEPGDGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEG 507
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 36.6 bits (83), Expect = 0.012
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 52 YYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGG 111
Y Q ++ G Y + + + G+ G GG +R G Y PR R GGG
Sbjct: 194 YGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGR-----GGGR 248
Query: 112 GGYSSYGNSD----NTHGGD------HHSTYGNPEGNMV 140
GG G SD N GG H S N + N +
Sbjct: 249 GGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTI 287
Score = 29.3 bits (64), Expect = 1.9
Identities = 28/93 (30%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 42 SDIYPKPKPPYYPQPENPDSGGN--------IYPRPKPRPQPQPGNSGNSGGYFNDVDRD 93
S Y +P+ Y Q P GG Y P+ Q NS + GG
Sbjct: 119 SSSYGQPQSGSYSQ--QPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGG---G 173
Query: 94 DGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGG 126
G Y GG GGG YGN D + GG
Sbjct: 174 GGNYGQDQSSMSSGGGSGGG---YGNQDQSGGG 203
Score = 27.3 bits (59), Expect = 7.3
Identities = 26/101 (25%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 51 PYYPQPENPDSGGNIY---PRPKPRPQPQPGNSGNS---GGYFNDVDRDDGRYPPRPRPR 104
P Y Q P S Y + QPQ G+ GG + PP+ +
Sbjct: 98 PGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQ 157
Query: 105 PP---------AGGGGGGYSSYGNSDNTHGGDHHSTYGNPE 136
GGGGGG S + GG YGN +
Sbjct: 158 QNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQD 198
Score = 26.9 bits (58), Expect = 9.5
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 74 QPQPGNSGNSGGYFNDVDRD----DGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDH 128
Q + G SGG + + D+ G Y + R GG GGG G N G +
Sbjct: 181 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGY 239
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.140 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,231,673
Number of Sequences: 37866
Number of extensions: 877407
Number of successful extensions: 7268
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 533
Number of HSP's that attempted gapping in prelim test: 4707
Number of HSP's gapped (non-prelim): 2317
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.