Search of human proteins with 28144893

Search of human proteins with 28144893

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28144893 crumbs 3 isoform b precursor [Homo sapiens]
         (123 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28144893 crumbs 3 isoform b precursor [Homo sapiens]               239   5e-64
gi|21040241 crumbs 3 isoform a precursor [Homo sapiens]               192   4e-50
gi|118130809 endothelial cell-specific chemotaxis regulator [Hom...    36   0.006
gi|112420992 crumbs homolog 2 [Homo sapiens]                           35   0.011
gi|40217823 SLIT and NTRK-like family, member 5 [Homo sapiens]         34   0.024
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]    33   0.054
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]    33   0.054
gi|126362957 leukocyte immunoglobulin-like receptor, subfamily B...    32   0.16 
gi|116488411 leukocyte immunoglobulin-like receptor, subfamily B...    32   0.16 
gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B...    31   0.21 
gi|5032005 protein tyrosine phosphatase, receptor type, C-associ...    30   0.35 
gi|126362953 leukocyte immunoglobulin-like receptor, subfamily B...    30   0.46 
gi|126362951 leukocyte immunoglobulin-like receptor, subfamily B...    30   0.46 
gi|15029530 leucine rich repeat containing 4 [Homo sapiens]            30   0.46 
gi|4506303 protein tyrosine phosphatase, receptor type, A isofor...    29   0.79 
gi|41327708 crumbs homolog 1 precursor [Homo sapiens]                  29   0.79 
gi|237858656 ring finger protein 170 isoform b [Homo sapiens]          29   1.0  
gi|237858654 ring finger protein 170 isoform a [Homo sapiens]          29   1.0  
gi|237858650 ring finger protein 170 isoform a [Homo sapiens]          29   1.0  
gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B...    29   1.0  
gi|134288890 DIS3 mitotic control homolog (S. cerevisiae)-like 2...    29   1.0  
gi|14589929 protocadherin 18 precursor [Homo sapiens]                  29   1.0  
gi|21687218 CD300 molecule-like family member g [Homo sapiens]         28   1.3  
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]      28   1.8  
gi|102468717 mediator complex subunit 13 [Homo sapiens]                28   1.8  
gi|24308394 hypothetical protein LOC140893 [Homo sapiens]              28   1.8  
gi|45387951 transmembrane protein 108 [Homo sapiens]                   28   2.3  
gi|210147493 transmembrane protein 108 [Homo sapiens]                  28   2.3  
gi|89993690 mouse double minute 2 homolog isoform MDM2a [Homo sa...    27   3.0  
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]             27   3.0  

>gi|28144893 crumbs 3 isoform b precursor [Homo sapiens]
          Length = 123

 Score =  239 bits (609), Expect = 5e-64
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI 60
           MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
Sbjct: 1   MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI 60

Query: 61  IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC 120
           IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC
Sbjct: 61  IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQGC 120

Query: 121 LPI 123
           LPI
Sbjct: 121 LPI 123


>gi|21040241 crumbs 3 isoform a precursor [Homo sapiens]
          Length = 120

 Score =  192 bits (489), Expect = 4e-50
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI 60
           MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
Sbjct: 1   MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI 60

Query: 61  IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQ 100
           IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQ
Sbjct: 61  IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQ 100


>gi|118130809 endothelial cell-specific chemotaxis regulator [Homo
           sapiens]
          Length = 205

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 32  SANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQTEG 91
           S  E++T+LPS TS +    L   A   I  +  L+  +++ VG+  L  K R+ +++E 
Sbjct: 103 SMREDATILPSPTSETV---LTVAAFGVISFIVILVVVVIILVGVVSLRFKCRKSKESED 159

Query: 92  TYRPSSEEQFSHAAEARAPQDS 113
             +P S       + A   +DS
Sbjct: 160 PQKPGSSGLSESCSTANGEKDS 181


>gi|112420992 crumbs homolog 2 [Homo sapiens]
          Length = 1285

 Score = 35.4 bits (80), Expect = 0.011
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 54   PEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDS 113
            P  +  + V  +    LLL +GL   +   R++RQ+EGTY PS +E     A AR   DS
Sbjct: 1219 PFPLLEVAVPAACACLLLLLLGLLSGILAARKRRQSEGTYSPSQQE----VAGARLEMDS 1274


>gi|40217823 SLIT and NTRK-like family, member 5 [Homo sapiens]
          Length = 958

 Score = 34.3 bits (77), Expect = 0.024
 Identities = 18/69 (26%), Positives = 37/69 (53%)

Query: 30  TTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQT 89
           T +   NST  P+S  +    +  P ++  + ++   + ++ +A GL +LV K R+K Q+
Sbjct: 638 TPAVRLNSTGAPASLGAGGGASSVPLSVLILSLLLVFIMSVFVAAGLFVLVMKRRKKNQS 697

Query: 90  EGTYRPSSE 98
           + T   +S+
Sbjct: 698 DHTSTNNSD 706


>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
          Length = 407

 Score = 33.1 bits (74), Expect = 0.054
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 5   GLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITA 59
           GLG L   GL  LL   G       ++S ++++ V PSST+SS+     P A  A
Sbjct: 182 GLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAA 236


>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
          Length = 407

 Score = 33.1 bits (74), Expect = 0.054
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 5   GLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITA 59
           GLG L   GL  LL   G       ++S ++++ V PSST+SS+     P A  A
Sbjct: 182 GLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAA 236


>gi|126362957 leukocyte immunoglobulin-like receptor, subfamily B,
           member 1 isoform 4 [Homo sapiens]
          Length = 651

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 38  TVLPSSTSSSSDGNLRPEAITAI--------IVVFSLLAALLLAVGLALLVRKLREKRQT 89
           T  P+STS   D  L P              +V+  L+A +LL + L LL   LR +RQ 
Sbjct: 430 TTGPTSTSGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLLLLFLILRHRRQG 489

Query: 90  EGTYRPSSEEQFSHAAEARAPQDSKETVQ 118
           +       +  F H A A  P+ +   +Q
Sbjct: 490 KHWTSTQRKADFQHPAGAVGPEPTDRGLQ 518


>gi|116488411 leukocyte immunoglobulin-like receptor, subfamily B,
           member 1 isoform 1 [Homo sapiens]
          Length = 650

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 38  TVLPSSTSSSSDGNLRPEAITAI--------IVVFSLLAALLLAVGLALLVRKLREKRQT 89
           T  P+STS   D  L P              +V+  L+A +LL + L LL   LR +RQ 
Sbjct: 430 TTGPTSTSGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLLLLFLILRHRRQG 489

Query: 90  EGTYRPSSEEQFSHAAEARAPQDSKETVQ 118
           +       +  F H A A  P+ +   +Q
Sbjct: 490 KHWTSTQRKADFQHPAGAVGPEPTDRGLQ 518


>gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B,
           member 2 isoform 1 [Homo sapiens]
          Length = 598

 Score = 31.2 bits (69), Expect = 0.21
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 26  GQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLRE 85
           G I T +  E+  + P+ +   S        +  I+V   LL  LLL     LL   LR 
Sbjct: 431 GPISTPAGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVVLLLLLLL-----LLFLILRH 485

Query: 86  KRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQ 118
           +RQ +       +  F H A A  P+ +   +Q
Sbjct: 486 RRQGKHWTSTQRKADFQHPAGAVGPEPTDRGLQ 518


>gi|5032005 protein tyrosine phosphatase, receptor type,
          C-associated protein [Homo sapiens]
          Length = 206

 Score = 30.4 bits (67), Expect = 0.35
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 58 TAIIVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPS 96
          +++ VV  LL  LLLA GLAL  R+L   R + G Y P+
Sbjct: 32 SSVTVVLLLLLLLLLATGLALAWRRL--SRDSGGYYHPA 68


>gi|126362953 leukocyte immunoglobulin-like receptor, subfamily B,
           member 1 isoform 3 [Homo sapiens]
          Length = 651

 Score = 30.0 bits (66), Expect = 0.46
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 26  GQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLRE 85
           G   T++  E+  + P+ +   S        +  I+V   LL  LLL     LL   LR 
Sbjct: 432 GPTSTSAGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLL-----LLFLILRH 486

Query: 86  KRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQ 118
           +RQ +       +  F H A A  P+ +   +Q
Sbjct: 487 RRQGKHWTSTQRKADFQHPAGAVGPEPTDRGLQ 519


>gi|126362951 leukocyte immunoglobulin-like receptor, subfamily B,
           member 1 isoform 2 [Homo sapiens]
          Length = 652

 Score = 30.0 bits (66), Expect = 0.46
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 26  GQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLRE 85
           G   T++  E+  + P+ +   S        +  I+V   LL  LLL     LL   LR 
Sbjct: 432 GPTSTSAGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLL-----LLFLILRH 486

Query: 86  KRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQ 118
           +RQ +       +  F H A A  P+ +   +Q
Sbjct: 487 RRQGKHWTSTQRKADFQHPAGAVGPEPTDRGLQ 519


>gi|15029530 leucine rich repeat containing 4 [Homo sapiens]
          Length = 653

 Score = 30.0 bits (66), Expect = 0.46
 Identities = 18/65 (27%), Positives = 30/65 (46%)

Query: 28  IQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKR 87
           IQTT   +   V  + T+     +L     T  I++   +A  LLA  + ++  KLR++ 
Sbjct: 495 IQTTRVPKQVAVPATDTTDKMQTSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRH 554

Query: 88  QTEGT 92
           Q   T
Sbjct: 555 QQRST 559


>gi|4506303 protein tyrosine phosphatase, receptor type, A isoform 1
           precursor [Homo sapiens]
          Length = 802

 Score = 29.3 bits (64), Expect = 0.79
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 25  WGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLR 84
           W    +T+A    T  PS  S S D   R E  T II V   L++LL+ V + +++  LR
Sbjct: 121 WEGNSSTAATTPETFPPSGNSDSKD--RRDE--TPIIAVMVALSSLLVIVFIIIVLYMLR 176

Query: 85  EKRQTEGTYRPSSEEQFSHAAEARAPQ 111
            K+  +     +S    +   E   PQ
Sbjct: 177 FKKYKQAGSHSNSFRLSNGRTEDVEPQ 203


>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
          Length = 1406

 Score = 29.3 bits (64), Expect = 0.79
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 62   VVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQ 100
            V  +LL  LLLA+  +++      KR T+GTY PS +E+
Sbjct: 1351 VTVALLLILLLAIVASVVTSN---KRATQGTYSPSRQEK 1386


>gi|237858656 ring finger protein 170 isoform b [Homo sapiens]
          Length = 200

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 20/86 (23%)

Query: 26  GQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLAL------- 78
           G++Q+   +++S +            +  + + A++V F+L+A L+ A+   +       
Sbjct: 6   GEVQSLKLDDDSVI----------EGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPE 55

Query: 79  ---LVRKLREKRQTEGTYRPSSEEQF 101
              LVR LRE+ QTE     ++ +QF
Sbjct: 56  NQELVRVLREQLQTEQDAPAATRQQF 81


>gi|237858654 ring finger protein 170 isoform a [Homo sapiens]
          Length = 258

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 20/86 (23%)

Query: 26  GQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLAL------- 78
           G++Q+   +++S +            +  + + A++V F+L+A L+ A+   +       
Sbjct: 6   GEVQSLKLDDDSVI----------EGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPE 55

Query: 79  ---LVRKLREKRQTEGTYRPSSEEQF 101
              LVR LRE+ QTE     ++ +QF
Sbjct: 56  NQELVRVLREQLQTEQDAPAATRQQF 81


>gi|237858650 ring finger protein 170 isoform a [Homo sapiens]
          Length = 258

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 20/86 (23%)

Query: 26  GQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLAL------- 78
           G++Q+   +++S +            +  + + A++V F+L+A L+ A+   +       
Sbjct: 6   GEVQSLKLDDDSVI----------EGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPE 55

Query: 79  ---LVRKLREKRQTEGTYRPSSEEQF 101
              LVR LRE+ QTE     ++ +QF
Sbjct: 56  NQELVRVLREQLQTEQDAPAATRQQF 81


>gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B,
           member 2 isoform 2 [Homo sapiens]
          Length = 597

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 61  IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAPQDSKETVQ 118
           +V+  L+A +LL + L LL   LR +RQ +       +  F H A A  P+ +   +Q
Sbjct: 460 VVIGILVAVVLLLLLLLLLFLILRHRRQGKHWTSTQRKADFQHPAGAVGPEPTDRGLQ 517


>gi|134288890 DIS3 mitotic control homolog (S. cerevisiae)-like 2
           [Homo sapiens]
          Length = 885

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 51  NLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQFSHAAEARAP 110
           ++  E    +I +FSL+  +L A   AL    + ++  T+G   P  EE+ S       P
Sbjct: 824 DMEQEPAQQVITIFSLVEVVLQAESTALKYSAILKRPGTQGHLGPEKEEEESDG----EP 879

Query: 111 QDS 113
           +DS
Sbjct: 880 EDS 882


>gi|14589929 protocadherin 18 precursor [Homo sapiens]
          Length = 1135

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 42  SSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQF 101
           +ST+ +S      +    II+    + A+LL + +    R  REK+ T       +E  +
Sbjct: 684 TSTAMTSVSQASLDVSMIIIISLGAICAVLLVIMVLFATRCNREKKDTRSYNCRVAESTY 743

Query: 102 SHAAEARAPQDSK------ETVQGCLPI 123
            H  +  + Q  K       T+ G LPI
Sbjct: 744 QHHPKRPSRQIHKGDITLVPTINGTLPI 771


>gi|21687218 CD300 molecule-like family member g [Homo sapiens]
          Length = 332

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 27  QIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREK 86
           Q+ +TSA + S  L S +S           +  ++V+ SLL+A  L    + L+   +E 
Sbjct: 219 QLNSTSAEDTSPALSSGSSKPRVSIPMVRILAPVLVLLSLLSAAGLIAFCSHLLLWRKEA 278

Query: 87  RQTEGTYRPSSEEQFS----HAAEARAPQDSKE 115
           +Q   T R    E+F      A E  AP  + E
Sbjct: 279 QQATETQR---NEKFCLSRLTAEEKEAPSQAPE 308


>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
          Length = 4753

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 4    PGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDG 50
            P  GLLL +GL  L A W    G +Q + +++ S + P S S+ + G
Sbjct: 4647 PERGLLL-IGLQVLHAEWDPIAGALQDSPSSQPSPLPPVSISTQAPG 4692


>gi|102468717 mediator complex subunit 13 [Homo sapiens]
          Length = 2174

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 28   IQTTSANENSTVLPSSTSSSSDGNL 52
            I T+ A  NST+  +STSSSS  NL
Sbjct: 1522 ISTSVATANSTLTTASTSSSSSSNL 1546


>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
          Length = 664

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 11  ALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSS 48
           AL  P  L+ WGRA GQ     A ++ ++ P++  ++S
Sbjct: 437 ALDKPLDLSEWGRARGQDTPKPAGQHGSLSPAAAHTAS 474


>gi|45387951 transmembrane protein 108 [Homo sapiens]
          Length = 575

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 29  QTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQ 88
           Q  S    +   PS  S S+    + E +  + +   + + L   V  A        +  
Sbjct: 377 QGASTTPQAPTHPSRVSESTISGAKEETVATLTMTDRVPSPLSTVVSTA--TGNFLNRLV 434

Query: 89  TEGTYRPSSEEQFSHAAEARAPQ 111
             GT++P +    SH AE   PQ
Sbjct: 435 PAGTWKPGTAGNISHVAEGDKPQ 457


>gi|210147493 transmembrane protein 108 [Homo sapiens]
          Length = 575

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 29  QTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQ 88
           Q  S    +   PS  S S+    + E +  + +   + + L   V  A        +  
Sbjct: 377 QGASTTPQAPTHPSRVSESTISGAKEETVATLTMTDRVPSPLSTVVSTA--TGNFLNRLV 434

Query: 89  TEGTYRPSSEEQFSHAAEARAPQ 111
             GT++P +    SH AE   PQ
Sbjct: 435 PAGTWKPGTAGNISHVAEGDKPQ 457


>gi|89993690 mouse double minute 2 homolog isoform MDM2a [Homo
           sapiens]
          Length = 249

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 79  LVRKLREKRQTEG--TYRPSSEEQFSHAAEARAPQDSKETVQGCLPI 123
           LV++L+E++ +      RPS+  +    +E    QD +E+V+  LP+
Sbjct: 144 LVQELQEEKPSSSHLVSRPSTSSRRRAISETEETQDKEESVESSLPL 190


>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
          Length = 4391

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 10  LALGLPFLLARWGRAWGQIQT------TSANENSTVLPSSTSSSSDGNLRPEAITAIIVV 63
           +A+G+P  +  W   WG I +      TS     T++      S  G    EA+ A  +V
Sbjct: 429 VAIGVPTPIINWRLNWGHIPSHPRVTVTSEGGRGTLIIRDVKESDQGAYTCEAMNARGMV 488

Query: 64  FSL 66
           F +
Sbjct: 489 FGI 491


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,328,947
Number of Sequences: 37866
Number of extensions: 151144
Number of successful extensions: 814
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 56
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.