Guide to the Human Genome
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Name: ZNF80 Sequence: fasta or formatted (273aa) NCBI GI: 89111947
Description:

zinc finger protein 80

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.5          4           1
 C cysteine            7.0         19           1
 D aspartate           2.6          7           1
 E glutamate           7.7         21           1
 F phenylalanine       5.1         14           2
 G glycine             9.5         26           2
 H histidine           7.0         19           1
 I isoleucine          2.2          6           1
 K lysine             10.3         28           1
 L leucine             5.1         14           2
 M methionine          1.5          4           1
 N asparagine          2.2          6           1
 P proline             3.7         10           1
 Q glutamine           4.0         11           2
 R arginine            5.5         15           2
 S serine              8.1         22           2
 T threonine           7.3         20           1
 V valine              4.8         13           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 80 
ZNF599                0.551   zinc finger protein 599 
ZNF543                0.533   zinc finger protein 543 
ZNF805                0.526   zinc finger protein 805 isoform 2 
ZNF805                0.526   zinc finger protein 805 isoform 1 
ZNF550                0.498   zinc finger protein 550 
ZNF264                0.486   zinc finger protein 264 
LOC344065             0.455   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.455   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.455   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF184                0.455   zinc finger protein 184 
ZNF461                0.455   gonadotropin inducible transcription repressor 1 [Ho...
ZNF154                0.451   zinc finger protein 154 
ZNF678                0.449   zinc finger protein 678 
ZNF3                  0.444   zinc finger protein 3 isoform 2 
ZNF436                0.442   zinc finger protein 436 
ZNF436                0.442   zinc finger protein 436 
ZNF420                0.441   zinc finger protein 420 
ZNF167                0.439   zinc finger protein 167 isoform 1 
ZNF681                0.439   zinc finger protein 681 
ZNF665                0.439   zinc finger protein 665 
LOC400713             0.437   zinc finger protein LOC400713 
ZNF708                0.437   zinc finger protein 708 
ZNF83                 0.437   zinc finger protein 83 isoform a 
ZNF83                 0.437   zinc finger protein 83 isoform a 
ZNF83                 0.437   zinc finger protein 83 isoform a 
ZNF83                 0.437   zinc finger protein 83 isoform a 
ZNF83                 0.437   zinc finger protein 83 isoform a 
ZNF160                0.437   zinc finger protein 160 
ZNF160                0.437   zinc finger protein 160 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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