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Search of human proteins with 27545323
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27545323 chondroitin polymerizing factor [Homo sapiens]
(775 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27545323 chondroitin polymerizing factor [Homo sapiens] 1573 0.0
gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens] 848 0.0
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 161 2e-39
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 159 1e-38
gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferas... 69 2e-11
gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransfera... 60 6e-09
gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransfera... 60 6e-09
gi|9910144 core 1 synthase, glycoprotein-N-acetylgalactosamine 3... 39 0.018
gi|239757870 PREDICTED: novel protein similar to chondroitin sul... 38 0.031
gi|239752388 PREDICTED: novel protein similar to chondroitin sul... 38 0.031
gi|239746905 PREDICTED: novel protein similar to chondroitin sul... 38 0.031
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 38 0.041
gi|157412240 C1GALT1-specific chaperone 1-like [Homo sapiens] 37 0.091
gi|148747397 deleted in lymphocytic leukemia, 7 [Homo sapiens] 35 0.35
gi|148612825 Rap GTPase interactor [Homo sapiens] 34 0.45
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 34 0.59
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 34 0.59
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 34 0.59
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 34 0.59
gi|44888835 ATPase, class I, type 8B, member 3 [Homo sapiens] 33 1.0
gi|31657109 zinc finger protein 282 [Homo sapiens] 33 1.0
gi|169214011 PREDICTED: hypothetical protein [Homo sapiens] 33 1.3
gi|113428768 PREDICTED: hypothetical protein [Homo sapiens] 33 1.3
gi|113428351 PREDICTED: hypothetical protein [Homo sapiens] 33 1.3
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 33 1.3
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 32 1.7
gi|13375756 occludin/ELL domain containing 1 [Homo sapiens] 32 1.7
gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo sap... 32 2.2
gi|51988914 fibroblast growth factor receptor-like 1 precursor [... 32 2.2
gi|51988910 fibroblast growth factor receptor-like 1 precursor [... 32 2.2
>gi|27545323 chondroitin polymerizing factor [Homo sapiens]
Length = 775
Score = 1573 bits (4072), Expect = 0.0
Identities = 775/775 (100%), Positives = 775/775 (100%)
Query: 1 MRASLLLSVLRPAGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAAR 60
MRASLLLSVLRPAGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAAR
Sbjct: 1 MRASLLLSVLRPAGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAAR 60
Query: 61 RPNSVQPGAEREKPGAGEGAGENWEPRVLPYHPAQPGQAAKKAVRTRYISTELGIRQRLL 120
RPNSVQPGAEREKPGAGEGAGENWEPRVLPYHPAQPGQAAKKAVRTRYISTELGIRQRLL
Sbjct: 61 RPNSVQPGAEREKPGAGEGAGENWEPRVLPYHPAQPGQAAKKAVRTRYISTELGIRQRLL 120
Query: 121 VAVLTSQTTLPTLGVAVNRTLGHRLERVVFLTGARGRRAPPGMAVVTLGEERPIGHLHLA 180
VAVLTSQTTLPTLGVAVNRTLGHRLERVVFLTGARGRRAPPGMAVVTLGEERPIGHLHLA
Sbjct: 121 VAVLTSQTTLPTLGVAVNRTLGHRLERVVFLTGARGRRAPPGMAVVTLGEERPIGHLHLA 180
Query: 181 LRHLLEQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGRPQDFIGGEPTPG 240
LRHLLEQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGRPQDFIGGEPTPG
Sbjct: 181 LRHLLEQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGRPQDFIGGEPTPG 240
Query: 241 RYCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPDEWLGRCILDATGVGCTGDHEGVHY 300
RYCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPDEWLGRCILDATGVGCTGDHEGVHY
Sbjct: 241 RYCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPDEWLGRCILDATGVGCTGDHEGVHY 300
Query: 301 SHLELSPGEPVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQELQWEIQ 360
SHLELSPGEPVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQELQWEIQ
Sbjct: 301 SHLELSPGEPVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQELQWEIQ 360
Query: 361 NTSHLAVDGDRAAAWPVGIPAPSRPASRFEVLRWDYFTEQHAFSCADGSPRCPLRGADRA 420
NTSHLAVDGDRAAAWPVGIPAPSRPASRFEVLRWDYFTEQHAFSCADGSPRCPLRGADRA
Sbjct: 361 NTSHLAVDGDRAAAWPVGIPAPSRPASRFEVLRWDYFTEQHAFSCADGSPRCPLRGADRA 420
Query: 421 DVADVLGTALEELNRRYHPALRLQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRP 480
DVADVLGTALEELNRRYHPALRLQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRP
Sbjct: 421 DVADVLGTALEELNRRYHPALRLQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRP 480
Query: 481 LTRRVQLLRPLSRVEILPVPYVTEASRLTVLLPLAAAERDLAPGFLEAFATAALEPGDAA 540
LTRRVQLLRPLSRVEILPVPYVTEASRLTVLLPLAAAERDLAPGFLEAFATAALEPGDAA
Sbjct: 481 LTRRVQLLRPLSRVEILPVPYVTEASRLTVLLPLAAAERDLAPGFLEAFATAALEPGDAA 540
Query: 541 AALTLLLLYEPRQAQRVAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDL 600
AALTLLLLYEPRQAQRVAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDL
Sbjct: 541 AALTLLLLYEPRQAQRVAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDL 600
Query: 601 LSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPP 660
LSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPP
Sbjct: 601 LSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPP 660
Query: 661 ELGRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVL 720
ELGRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVL
Sbjct: 661 ELGRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVL 720
Query: 721 RAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFEQEQGNST 775
RAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFEQEQGNST
Sbjct: 721 RAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFEQEQGNST 775
>gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]
Length = 772
Score = 848 bits (2192), Expect = 0.0
Identities = 453/799 (56%), Positives = 557/799 (69%), Gaps = 51/799 (6%)
Query: 1 MRASLLLSVLRPAGPVAVGISLGFTLSLLSVTWV----EEPCGPGPPQPGDSELPPRGNT 56
MR S LL++LRPA P+ +G+SLG +LSLL V+W+ E+PC + G P+
Sbjct: 1 MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGERGG----PQNPD 56
Query: 57 NAARRPNSVQPGAEREKPGAGEGAGENWEPRVLPYHPAQPGQAAKKAVRTRYISTELGIR 116
+ AR S E+++PR++PY+ P + KK +RTRYI TELG R
Sbjct: 57 SRARLDQS----------------DEDFKPRIVPYY-RDPNKPYKKVLRTRYIQTELGSR 99
Query: 117 QRLLVAVLTSQTTLPTLGVAVNRTLGHRLERVVFLTGARGRRAPPGMAVVTLGEERPIGH 176
+RLLVAVLTS+ TL TL VAVNRT+ H R+++ TG RG RAP GM VV+ G+ERP
Sbjct: 100 ERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWL 159
Query: 177 LHLALRHLLEQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGRPQDFIG-G 235
+ LRHL G D+DWFF++ D TY +A LA L GHLS+ LYLGR ++FIG G
Sbjct: 160 MSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQ--DLYLGRAEEFIGAG 217
Query: 236 EPTPGRYCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPDEWLGRCILDATGVGCTGDH 295
E RYCHGGFG LLSR LL +LRPHL+GCR DI+SARPDEWLGRC++D+ GVGC H
Sbjct: 218 EQA--RYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGVGCVSQH 275
Query: 296 EGVHYSHLELSPG-EPVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQE 354
+G Y EL+ +P +EG F SA HPV + MY+LHK F+ ELER Y EI++
Sbjct: 276 QGQQYRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQ 335
Query: 355 LQWEIQNTSHLAVDGDRAAAWPVGIPAPSRPASRFEVLRWDYFTEQHAFSCADGSPRCPL 414
LQ +I+N + L +G+ +WPVG+PAP P SRFEVL WDYFTEQH FSCADG+P+CPL
Sbjct: 336 LQAQIRNLTVLTPEGEAGLSWPVGLPAPFTPHSRFEVLGWDYFTEQHTFSCADGAPKCPL 395
Query: 415 RGADRADVADVLGTALEELNRRYHPALRLQKQQLVNGYRRFDPARGMEYTLDLQLEALTP 474
+GA RADV D L TALE+LNRRY P LR QKQ+L+NGYRRFDPARGMEYTLDL LE +T
Sbjct: 396 QGASRADVGDALETALEQLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDLLLECVTQ 455
Query: 475 QGGRRPLTRRVQLLRPLSRVEILPVPYVTEASRLTVLLPLAAAERDLAPGFLEAFATAAL 534
+G RR L RRV LLRPLSRVEILP+PYVTEA+R+ ++LPL AE AP FLEAFA L
Sbjct: 456 RGHRRALARRVSLLRPLSRVEILPMPYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVL 515
Query: 535 EPGDAAAALTLLLLYEPRQAQRVAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSP 594
EP + A LTLLL+Y PR+ R A D F VKA AELERR+PG R+ WL+V+ APS
Sbjct: 516 EPRE-HALLTLLLVYGPREGGRGA-PDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQ 573
Query: 595 LRLMDLLSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPP 654
+RLMD++SKKHP+DTLF L T P+ LNRCRM+AISGWQAFFP+HFQ F+PA++P
Sbjct: 574 VRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQ 633
Query: 655 QG-PGPPELGRDT---------------GRFDRQAASEACFYNSDYVAARGRLAA--ASE 696
+ PGPP G D GRFDRQA++E CFYN+DY+AAR RLA A +
Sbjct: 634 RSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARARLAGELAGQ 693
Query: 697 QEEELLESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGL 756
+EEE LE L+V ++FL FS LH+ RAVEP L+Q++ + CS RLSE+LYHRC S LEGL
Sbjct: 694 EEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGL 753
Query: 757 GSRTQLAMLLFEQEQGNST 775
G R QLAM LFEQEQ NST
Sbjct: 754 GGRAQLAMALFEQEQANST 772
>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
Length = 802
Score = 161 bits (407), Expect = 2e-39
Identities = 176/727 (24%), Positives = 290/727 (39%), Gaps = 99/727 (13%)
Query: 116 RQRLLVAVLTSQTTLPTLGVAVNRTLGHRLERVVFLTGARGRRAPPGMAVVTL----GEE 171
R L V V+T+Q L T VA RT + V + G + VV L
Sbjct: 84 RNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVQFFSSEGSDTSVPIPVVPLRGVDDSY 143
Query: 172 RPIGHLHLALRHLLEQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGRPQD 231
P + L+++ + + D ++WF D Y + L SL S+ L+LG Q
Sbjct: 144 PPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLENFLR--SLNSSEPLFLG--QT 199
Query: 232 FIGGEPTPGR--------YCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPDEWLGRCI 283
+G G+ +C GG GV++SR +L+++ PH+ C ++ + D +GRC+
Sbjct: 200 GLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPHIGKCLREMYTTHEDVEVGRCV 259
Query: 284 LDATGVGCTGDHE--GVHYSHLELSPGEPVQE-GDPHFRSALTAHPVRDPVHMYQLHKAF 340
GV C +E + Y + E + +++ + A+T HP ++P + Y+LH
Sbjct: 260 RRFAGVQCVWSYEMQQLFYENYEQNKKGYIRDLHNSKIHQAITLHPNKNPPYQYRLHSYM 319
Query: 341 ARAELERTYQEIQELQWEIQNTSHLAVDGDRAAAWPVGIPAPS----RPASRFEVLRWDY 396
++ +L EI S + +GIP PS +P R E+L W++
Sbjct: 320 LSRKISELRHRTIQLHREIVLMSKYSNTEIHKEDLQLGIP-PSFMRFQPRQREEILEWEF 378
Query: 397 FTEQHAFSCADGSPRCPLRGADRAD---VADVLGTALEELNRRYHPALR-LQKQQLVNGY 452
T ++ +S DG P P RG D A + D++ +E +N R + +++ GY
Sbjct: 379 LTGKYLYSAVDGQP--PRRGMDSAQREALDDIVMQVMEMINANAKTRGRIIDFKEIQYGY 436
Query: 453 RRFDPARGMEYTLDLQLEALTPQGGRR--PLTRRVQLLRPLSRVEILP------------ 498
RR +P G EY LDL L +G + P+ R L + S+++ +
Sbjct: 437 RRVNPMYGAEYILDLLLLYKKHKGKKMTVPVRRHAYLQQTFSKIQFVEHEELDAQELAKR 496
Query: 499 ------------------VPYVTEAS----------RLTVLLPLAAAERDLAPGFLEAFA 530
VP+ S ++ +L+PL + D+ F+ F
Sbjct: 497 INQESGSLSFLSNSLKKLVPFQLPGSKSEHKEPKDKKINILIPL-SGRFDMFVRFMGNFE 555
Query: 531 TAALEPGDAAAALTLLLLYEPRQAQRVAHADVFAPVKAHVAELER----RFPGARVPWLS 586
L P + LL + P KA EL R ++P A + L
Sbjct: 556 KTCLIPNQNVKLVVLLFNSDSN------------PDKAKQVELMRDYRIKYPKADMQILP 603
Query: 587 VQTAAPSPLRLMDLLSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQA 646
V L L ++ S + ++L D V T +FL RCR + + G Q +FP+ F
Sbjct: 604 VSGEFSRALAL-EVGSSQFNNESLLFFCDVDLVFTTEFLQRCRANTVLGQQIYFPIIFSQ 662
Query: 647 FHPAVAPPQGPGPPE----LGRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELL 702
+ P + G P + + TG + C Y D V G + L
Sbjct: 663 YDPKIV-YSGKVPSDNHFAFTQKTGFWRNYGFGITCIYKGDLVRVGGFDVSIQGWG---L 718
Query: 703 ESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQL 762
E +D++ + + L R+ E ++ + C L Y CL S GS QL
Sbjct: 719 EDVDLFNKVVQ-AGLKTFRSQEVGVVHVHHPVFCDPNLDPKQYKMCLGSKASTYGSTQQL 777
Query: 763 AMLLFEQ 769
A + E+
Sbjct: 778 AEMWLEK 784
>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
Length = 882
Score = 159 bits (401), Expect = 1e-38
Identities = 202/831 (24%), Positives = 321/831 (38%), Gaps = 113/831 (13%)
Query: 14 GPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPGAEREK 73
GP + G T S S W + P P Q P G T P + G E+
Sbjct: 85 GPPLPEAAPGIT-SFRSSPWQQPP----PLQQRRRGREPEGATGLPGAPAA--EGEPEEE 137
Query: 74 PGAGEGAGENWEPRVLPYHPAQPGQAAKKAVRTRYISTELGIRQRLLVAVLTSQTTLPTL 133
G G + P ++ + G AA + R R L V V+T+Q L +
Sbjct: 138 DGGAAGQRRDGRPGS-SHNGSGDGGAAAPSARPRDF---------LYVGVMTAQKYLGSR 187
Query: 134 GVAVNRTLGHRLE-RVVFLTGARGRRA---PPGMAVVTL----GEERPIGHLHLALRHLL 185
+A RT + RV F + + A PP + V+ L P + ++++
Sbjct: 188 ALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMH 247
Query: 186 EQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGRPQ-------DFIGGEPT 238
+ + D ++WF D Y + L SL S+ LYLG+ +G EP
Sbjct: 248 DHYLDKYEWFMRADDDVYIKGDKLEEFLR--SLNSSKPLYLGQTGLGNIEELGKLGLEPG 305
Query: 239 PGRYCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPDEWLGRCILDATGVGCTGDHEGV 298
+C GG G++ SR +L+++ PH+ C ++ + D +GRC+ G C +E
Sbjct: 306 EN-FCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWSYEMQ 364
Query: 299 HYSHLELSPGEPVQEGDPH---FRSALTAHPVRDPVHMYQLHK-AFARAELERTYQEIQ- 353
H D H +A+T HP + P + Y+LH +R E Y+ IQ
Sbjct: 365 QLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYMLSRKISELRYRTIQL 424
Query: 354 ----ELQWEIQNTSHLAVDGDRAAAWPVGIPAPS--RPASRFEVLRWDYFTEQHAFSCAD 407
L ++ NT D IP+ + +P R EV+ W++ T + +S A+
Sbjct: 425 HRESALMSKLSNTEVSKEDQQLGV-----IPSFNHFQPRERNEVIEWEFLTGKLLYSAAE 479
Query: 408 GS-PRCPLRGADRADVADVLGTALEELNRRYHPALRL-QKQQLVNGYRRFDPARGMEYTL 465
PR L R + D + +E +N RL +++ GYRR +P G+EY L
Sbjct: 480 NQPPRQSLSSILRTALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRVNPMHGVEYIL 539
Query: 466 DLQLEALTPQGGRR--PLTRRVQLLRPLSR-----VEILPVPYVTEA------------- 505
DL L +G + P+ R L + S+ E L V + E+
Sbjct: 540 DLLLLYKRHKGRKLTVPVRRHAYLQQLFSKPFFRETEELDVNSLVESINSETQSFSFISN 599
Query: 506 -------------------SRLTVLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLL 546
++ +L+PL D+ F+E F L P L ++
Sbjct: 600 SLKILSSFQGAKEMGGHNEKKVHILVPL-IGRYDIFLRFMENFENMCLIP-KQNVKLVII 657
Query: 547 LLYEPRQAQRVAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHP 606
L H ++ + + ++P A + + ++ L L ++ S +
Sbjct: 658 LFSRDSGQDSSKHIEL-------IKGYQNKYPKAEMTLIPMKGEFSRGLGL-EMASAQFD 709
Query: 607 LDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPPE----- 661
DTL L D + DFL RCR + I G Q ++P+ F + P V G PP
Sbjct: 710 NDTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQYDPKVT--NGGNPPTDDYFI 767
Query: 662 LGRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLR 721
+ TG + C Y SD + A G + + LE +D+Y + S L R
Sbjct: 768 FSKKTGFWRDYGYGITCIYKSDLLGAGG---FDTSIQGWGLEDVDLYNKVI-LSGLRPFR 823
Query: 722 AVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFEQEQG 772
+ E ++ + C L Y CL S S QLA L E+ G
Sbjct: 824 SQEVGVVHIFHPVHCDPNLDPKQYKMCLGSKASTFASTMQLAELWLEKHLG 874
>gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferase 2
[Homo sapiens]
Length = 542
Score = 68.9 bits (167), Expect = 2e-11
Identities = 89/409 (21%), Positives = 158/409 (38%), Gaps = 50/409 (12%)
Query: 387 SRFEVLRWDYFTEQHAFSCADGSPRCP----LRGADRADVADVLGTALEELNRRYHP--- 439
S + V+ ++ FT F G R P +R R ++ +V+ LE +N
Sbjct: 141 SEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQ 200
Query: 440 ---------ALRLQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRPLTRRVQLLRP 490
L + V GY R + +G +Y L + LT R V L RP
Sbjct: 201 EDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKKADLTEY-------RHVTLFRP 253
Query: 491 LSRVEILPVPYVT-EASRLTVLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLLLLY 549
+ + + S + +++PLA F++ F + + L ++Y
Sbjct: 254 FGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQ-FMQNFRDVCIHQDKK---IHLTVVY 309
Query: 550 EPRQAQRVAHADVFAPVKAHVAEL--ERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHPL 607
++ + VK+ + + E F + L+ + L + K
Sbjct: 310 FGKEG--------LSKVKSILESVTSESNFHNYTLVSLNEEFNRGRGLNVGARAWDKG-- 359
Query: 608 DTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPPEL----- 662
+ L D + +FLN CR++A G + F+P+ F ++PA+ PP +
Sbjct: 360 EVLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVPPPVEQQLV 419
Query: 663 -GRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLR 721
+D+G + C Y SD++ G E + E + +Y +LH L V+R
Sbjct: 420 HKKDSGFWRDFGFGMTCQYRSDFLTIGG---FDMEVKGWGGEDVHLYRKYLH-GDLIVIR 475
Query: 722 AVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFEQE 770
P L + + C+ L+ + Y C+QS S + L ML+F +E
Sbjct: 476 TPVPGLFHLWHEKRCADELTPEQYRMCIQSKAMNEASHSHLGMLVFREE 524
>gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 60.5 bits (145), Expect = 6e-09
Identities = 91/401 (22%), Positives = 156/401 (38%), Gaps = 41/401 (10%)
Query: 386 ASRFEVLRWDYFTEQHAFSCADGSPRCP----LRGADRADVADVLGTALEELNR--RYHP 439
A+ + + +D FT Q + G R P +R R ++ + + +ALE LN P
Sbjct: 140 ATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALETLNSPAENSP 199
Query: 440 ALR-LQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRPLTRRVQLLRPLSRVEILP 498
R + G R + +G Y L T +G + +R+ L RP + +
Sbjct: 200 NHRPYTASDFIEGIYRTERDKGTLYEL-------TFKGDHKHEFKRLILFRPFGPIMKVK 252
Query: 499 VPYVTEASRL-TVLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLLLLYEPRQAQRV 557
+ A+ L V++PLA D F++ F +E D LT++ +
Sbjct: 253 NEKLNMANTLINVIVPLAKRV-DKFRQFMQNFREMCIEQ-DGRVHLTVVYFGK------- 303
Query: 558 AHADVFAPVKAHVAELER--RFPGARVPWLSVQTAAPSPLRLMDLLSKKHPLDTLFLLAG 615
+ VK + + F L+ + + L + K + L
Sbjct: 304 ---EEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGS--NVLLFFCD 358
Query: 616 PDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPPEL------GRDTGRF 669
D T +FLN CR++ G + F+P+ F ++P + P L ++TG +
Sbjct: 359 VDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHDAVPPLEQQLVIKKETGFW 418
Query: 670 DRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLRAVEPALLQ 729
C Y SD++ G + + E + +Y +LH S+L V+R L
Sbjct: 419 RDFGFGMTCQYRSDFINIGG---FDLDIKGWGGEDVHLYRKYLH-SNLIVVRTPVRGLFH 474
Query: 730 RYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFEQE 770
+ + C L+ + Y C+QS S QL ML+F E
Sbjct: 475 LWHEKRCMDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHE 515
>gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 60.5 bits (145), Expect = 6e-09
Identities = 91/401 (22%), Positives = 156/401 (38%), Gaps = 41/401 (10%)
Query: 386 ASRFEVLRWDYFTEQHAFSCADGSPRCP----LRGADRADVADVLGTALEELNR--RYHP 439
A+ + + +D FT Q + G R P +R R ++ + + +ALE LN P
Sbjct: 140 ATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALETLNSPAENSP 199
Query: 440 ALR-LQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRPLTRRVQLLRPLSRVEILP 498
R + G R + +G Y L T +G + +R+ L RP + +
Sbjct: 200 NHRPYTASDFIEGIYRTERDKGTLYEL-------TFKGDHKHEFKRLILFRPFGPIMKVK 252
Query: 499 VPYVTEASRL-TVLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLLLLYEPRQAQRV 557
+ A+ L V++PLA D F++ F +E D LT++ +
Sbjct: 253 NEKLNMANTLINVIVPLAKRV-DKFRQFMQNFREMCIEQ-DGRVHLTVVYFGK------- 303
Query: 558 AHADVFAPVKAHVAELER--RFPGARVPWLSVQTAAPSPLRLMDLLSKKHPLDTLFLLAG 615
+ VK + + F L+ + + L + K + L
Sbjct: 304 ---EEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGS--NVLLFFCD 358
Query: 616 PDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPPEL------GRDTGRF 669
D T +FLN CR++ G + F+P+ F ++P + P L ++TG +
Sbjct: 359 VDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHDAVPPLEQQLVIKKETGFW 418
Query: 670 DRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLRAVEPALLQ 729
C Y SD++ G + + E + +Y +LH S+L V+R L
Sbjct: 419 RDFGFGMTCQYRSDFINIGG---FDLDIKGWGGEDVHLYRKYLH-SNLIVVRTPVRGLFH 474
Query: 730 RYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFEQE 770
+ + C L+ + Y C+QS S QL ML+F E
Sbjct: 475 LWHEKRCMDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHE 515
>gi|9910144 core 1 synthase, glycoprotein-N-acetylgalactosamine
3-beta-galactosyltransferase, 1 [Homo sapiens]
Length = 363
Score = 38.9 bits (89), Expect = 0.018
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 8/176 (4%)
Query: 109 ISTELGIRQRLLVAVLTSQTTLPTLGVAVNRTLGHRLERVVFLTGARGRRAPPGMAVVTL 168
I+ L + R+L V+T L V T R +V+F++ + P
Sbjct: 79 IAENLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPAVGLKTKE 138
Query: 169 GEERPIGHLHLALRHLLEQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGR 228
G ++ A +++ E + +D DWF D TY L L +Y GR
Sbjct: 139 GRDQLYWKTIKAFQYVHEHYLEDADWFLKADDDTYVILDNLRWLLSKYD--PEEPIYFGR 196
Query: 229 P-QDFIGGEPTPGRYCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPDEWLGRCI 283
+ ++ Y GG G +LS+ L++ + + S+ D LGRC+
Sbjct: 197 RFKPYV-----KQGYMSGGAGYVLSKEALKRFVDAFKTDKCTHSSSIEDLALGRCM 247
>gi|239757870 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
Length = 142
Score = 38.1 bits (87), Expect = 0.031
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 703 ESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQL 762
E + +Y +L L V+R P L + + C+ L+ + Y C+QS SR+ L
Sbjct: 58 EDVHLYRKYLR-GDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHL 116
Query: 763 AMLLFEQE 770
ML+F +E
Sbjct: 117 GMLVFREE 124
>gi|239752388 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
Length = 142
Score = 38.1 bits (87), Expect = 0.031
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 703 ESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQL 762
E + +Y +L L V+R P L + + C+ L+ + Y C+QS SR+ L
Sbjct: 58 EDVHLYRKYLR-GDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHL 116
Query: 763 AMLLFEQE 770
ML+F +E
Sbjct: 117 GMLVFREE 124
>gi|239746905 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
Length = 142
Score = 38.1 bits (87), Expect = 0.031
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 703 ESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQL 762
E + +Y +L L V+R P L + + C+ L+ + Y C+QS SR+ L
Sbjct: 58 EDVHLYRKYLR-GDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHL 116
Query: 763 AMLLFEQE 770
ML+F +E
Sbjct: 117 GMLVFREE 124
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 37.7 bits (86), Expect = 0.041
Identities = 65/269 (24%), Positives = 99/269 (36%), Gaps = 34/269 (12%)
Query: 389 FEVLRWDYFTEQHAFSCADGSPRCPLRG---ADRADVADVLGTALEELNRRYHPALRLQK 445
FE+LR D+ RC + G A+ DV +E LN R+ L +
Sbjct: 693 FELLRSDW-----------NDLRCNVSGNLQLPEAEAVDVTAQYMERLNARHGGRFALLR 741
Query: 446 QQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRPLTRRVQLLRPLSRV--------EIL 497
+VN +R D ARG + L+L+L+ GGR L+ V L P +RV E
Sbjct: 742 --IVNVEKRRDSARGSRFLLELELQ--ERGGGRLRLSEYVFLRLPGARVGDADGESPEPA 797
Query: 498 PVPYVTEASRLTVLLPLAAAER-DLAPGFLEAFATAALEPGDAAAALTLLLLYEPRQAQR 556
P V R + PL A R D+ F+ A A + L +
Sbjct: 798 PAASVRPDGRPELCRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAAL----HARTGD 853
Query: 557 VAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDL---LSKKHPLDTLFLL 613
+ V ++ ++ER AR+P + R L + ++ L
Sbjct: 854 SRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFL 913
Query: 614 AGPDTVLTPDFLNRCRMHAISGWQAFFPM 642
P+ L+ R H + G AF P+
Sbjct: 914 CDLHIHFPPNILDGIRKHCVEGRLAFAPV 942
>gi|157412240 C1GALT1-specific chaperone 1-like [Homo sapiens]
Length = 315
Score = 36.6 bits (83), Expect = 0.091
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 22/145 (15%)
Query: 177 LHLALRHLLEQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGRPQDFIGGE 236
+ A +++ E++GD+++WFFL TT+ L L + ++ YLG F E
Sbjct: 120 MRTAYKYVFEKYGDNYNWFFLALPTTFAVIENLKYLL--FTRDASQPFYLGHTVIFGDLE 177
Query: 237 PTPGRYCHGGFGVLLSRMLLQQLRPHL---EGCRNDIV--SARPDEWLGRCILDATGVGC 291
Y G++LSR L+++L L E C + V D+ L C+
Sbjct: 178 -----YVTVEGGIVLSRELMKRLNRLLDNSETCADQSVIWKLSEDKQLAICL-------- 224
Query: 292 TGDHEGVHYSHLELSPGEPVQEGDP 316
+ GVH + E G V P
Sbjct: 225 --KYAGVHAENAEDYEGRDVFNTKP 247
>gi|148747397 deleted in lymphocytic leukemia, 7 [Homo sapiens]
Length = 160
Score = 34.7 bits (78), Expect = 0.35
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 25 TLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAARR--PNSVQPGAEREKPGAGEG 79
TL LL W G GP PG+ P +T ARR P +PG RE+ G G G
Sbjct: 20 TLQLLQQEW---GWGDGPVAPGNPRDPDHVSTAPARRSGPPRARPGPGREERGGGVG 73
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 34.3 bits (77), Expect = 0.45
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 11 RPAGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPGAE 70
R GP A ++ TL L W + P G P + G PP +++ P S G E
Sbjct: 854 RDPGPAAREVAPERTLPLRGAPWAQAPPGRQPSRGGSQAGPPHTDSSCLLTPPSTPLGPE 913
Query: 71 REKPGAGEGAG 81
P E G
Sbjct: 914 PGDPDWPESGG 924
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 33.9 bits (76), Expect = 0.59
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 40 PGPPQPGDSE--LPPRGNTNAARRPNSV------QPGAEREKPGAGEGAGENWEPRVLPY 91
PGPP P E PRG T A RP V P E+ PGA AG P
Sbjct: 895 PGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG-------APG 947
Query: 92 HPAQPGQAAKKAV 104
P G A ++ V
Sbjct: 948 TPGPQGIAGQRGV 960
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 33.9 bits (76), Expect = 0.59
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 13 AGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPGAERE 72
+GP A LG S+L T V + GPG P P +P + NT+ A + V PG E
Sbjct: 2464 SGPAASSGLLGLATSVLPTTTVVQTAGPGRPLP-QRPMPDQTNTSTAGTTDPV-PGPPTE 2521
Query: 73 KPG 75
G
Sbjct: 2522 PLG 2524
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 33.9 bits (76), Expect = 0.59
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 13 AGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPGAERE 72
+GP A LG S+L T V + GPG P P +P + NT+ A + V PG E
Sbjct: 2380 SGPAASSGLLGLATSVLPTTTVVQTAGPGRPLP-QRPMPDQTNTSTAGTTDPV-PGPPTE 2437
Query: 73 KPG 75
G
Sbjct: 2438 PLG 2440
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 33.9 bits (76), Expect = 0.59
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 13 AGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPGAERE 72
+GP A LG S+L T V + GPG P P +P + NT+ A + V PG E
Sbjct: 2380 SGPAASSGLLGLATSVLPTTTVVQTAGPGRPLP-QRPMPDQTNTSTAGTTDPV-PGPPTE 2437
Query: 73 KPG 75
G
Sbjct: 2438 PLG 2440
>gi|44888835 ATPase, class I, type 8B, member 3 [Homo sapiens]
Length = 1300
Score = 33.1 bits (74), Expect = 1.0
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 37 PCGPGPPQPGDSELPPRGNTNAARRPNSVQPGAEREKPGAGEGAGENWEPRVLPYHPAQP 96
P PGP GDS++ G+ P ++ G + G G+ G R H AQP
Sbjct: 20 PAPPGPGDTGDSDVTQEGS-----GPAGIRGGETVIRAGMGDSPGRGAPER---RHKAQP 71
Query: 97 GQAAK 101
G+A K
Sbjct: 72 GRARK 76
>gi|31657109 zinc finger protein 282 [Homo sapiens]
Length = 671
Score = 33.1 bits (74), Expect = 1.0
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 30 SVTWVEEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPGAEREKPGAGEGAG 81
S+ V+ P P PPQP PP+ + +P S+ P A E PG G
Sbjct: 396 SLLMVKNP-PPAPPQPQPQPQPPQPQLQSQPQPQSLPPIAVAENPGGPPSRG 446
>gi|169214011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 32.7 bits (73), Expect = 1.3
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 41 GPPQPGDSELPPRGNTN--AARRPN------------SVQPGAEREKPGAGEGAGENWEP 86
G QPG PPRG RP + QP ER + G G GAG P
Sbjct: 92 GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQP--ERGRAG-GPGAGPRTPP 148
Query: 87 RVLPYHPAQPGQAAKKAVR 105
LP P P Q KK R
Sbjct: 149 MTLPSPPTLPAQDGKKEAR 167
>gi|113428768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 32.7 bits (73), Expect = 1.3
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 41 GPPQPGDSELPPRGNTN--AARRPN------------SVQPGAEREKPGAGEGAGENWEP 86
G QPG PPRG RP + QP ER + G G GAG P
Sbjct: 92 GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQP--ERGRAG-GPGAGPRTPP 148
Query: 87 RVLPYHPAQPGQAAKKAVR 105
LP P P Q KK R
Sbjct: 149 MTLPSPPTLPAQDGKKEAR 167
>gi|113428351 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 32.7 bits (73), Expect = 1.3
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 41 GPPQPGDSELPPRGNTN--AARRPN------------SVQPGAEREKPGAGEGAGENWEP 86
G QPG PPRG RP + QP ER + G G GAG P
Sbjct: 92 GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQP--ERGRAG-GPGAGPRTPP 148
Query: 87 RVLPYHPAQPGQAAKKAVR 105
LP P P Q KK R
Sbjct: 149 MTLPSPPTLPAQDGKKEAR 167
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 32.7 bits (73), Expect = 1.3
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 17 AVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELP-PRGNTNAARRPNSVQPGAEREKPG 75
A G S G+ S W P PG P P +P P G + + P S P E PG
Sbjct: 1554 ASGFSPGY-----SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTS--PAYEPRSPG 1606
Query: 76 AGEGAGENWEPRVLPYHPAQP 96
++ P Y P P
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSP 1627
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 32.3 bits (72), Expect = 1.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 37 PCGPGPPQPGDSELPPRGNTNAARRPNSVQPGAEREKPGAGEGAGENWEP 86
P P PP G E PR A + ++ GAE+ P A G G + +P
Sbjct: 774 PHQPAPPDAGPGEREPRKEPRTAEK-RPLRRGAEKSLPPAATGPGADGQP 822
>gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
Length = 264
Score = 32.3 bits (72), Expect = 1.7
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 37 PCGPGPPQPGDSELPPRG-NTNAARRPNSVQPGAEREK 73
P GPGPP G L PRG T+A R P QPG + K
Sbjct: 76 PPGPGPPLQG---LAPRGLKTSAPRPPCQPQPGPHKAK 110
>gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 166
Score = 32.0 bits (71), Expect = 2.2
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 44 QPGDSELPPRGNTNAARRPNSVQPGAEREKPG-AGEGAGENWEPRVLPYHPAQPGQAAKK 102
QP D + +G A P GA EKPG G +W+P P PG+ A+
Sbjct: 4 QPADEKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQP------PPPPGRVAEH 57
Query: 103 AVR 105
R
Sbjct: 58 GAR 60
>gi|51988914 fibroblast growth factor receptor-like 1 precursor
[Homo sapiens]
Length = 504
Score = 32.0 bits (71), Expect = 2.2
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 15 PVAVGISLG--FTLSLLSVTWV----EEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPG 68
PV +GI G F L L + W+ ++PC P P P PP T R + P
Sbjct: 378 PVVIGIPAGAVFILGTL-LLWLCQAQKKPCTPAPAPPLPGHRPP--GTARDRSGDKDLPS 434
Query: 69 AEREKPGAGEGAGENWEPRVLPYHPAQPGQAA 100
G G G E P H PG A
Sbjct: 435 LAALSAGPGVGLCEEHGSPAAPQHLLGPGPVA 466
>gi|51988910 fibroblast growth factor receptor-like 1 precursor
[Homo sapiens]
Length = 504
Score = 32.0 bits (71), Expect = 2.2
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 15 PVAVGISLG--FTLSLLSVTWV----EEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPG 68
PV +GI G F L L + W+ ++PC P P P PP T R + P
Sbjct: 378 PVVIGIPAGAVFILGTL-LLWLCQAQKKPCTPAPAPPLPGHRPP--GTARDRSGDKDLPS 434
Query: 69 AEREKPGAGEGAGENWEPRVLPYHPAQPGQAA 100
G G G E P H PG A
Sbjct: 435 LAALSAGPGVGLCEEHGSPAAPQHLLGPGPVA 466
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,035,488
Number of Sequences: 37866
Number of extensions: 1789639
Number of successful extensions: 6556
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 6432
Number of HSP's gapped (non-prelim): 172
length of query: 775
length of database: 18,247,518
effective HSP length: 110
effective length of query: 665
effective length of database: 14,082,258
effective search space: 9364701570
effective search space used: 9364701570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.