Guide to the Human Genome
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Name: LOC728819 Sequence: fasta or formatted (315aa) NCBI GI: 157412240
Description:

C1GALT1-specific chaperone 1-like

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         16           1
 C cysteine            1.9          6           2
 D aspartate           5.7         18           1
 E glutamate           7.3         23           2
 F phenylalanine       6.0         19           2
 G glycine             5.7         18           2
 H histidine           3.2         10           3
 I isoleucine          5.4         17           2
 K lysine              5.1         16           1
 L leucine            10.5         33           2
 M methionine          2.9          9           2
 N asparagine          6.0         19           2
 P proline             2.9          9           2
 Q glutamine           3.5         11           2
 R arginine            4.4         14           1
 S serine              6.0         19           1
 T threonine           5.7         18           2
 V valine              6.3         20           2
 W tryptophan          1.9          6           1
 Y tyrosine            4.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C1GALT1-specific chaperone 1-like 
C1GALT1C1             0.629   C1GALT1-specific chaperone 1 
C1GALT1C1             0.629   C1GALT1-specific chaperone 1 
C1GALT1               0.104   core 1 synthase, glycoprotein-N-acetylgalactosamine 3...
B3GALTL               0.030   beta 1,3-galactosyltransferase-like 
CHSY1                 0.024   chondroitin sulfate synthase 1 
CHSY3                 0.024   chondroitin sulfate synthase 3 
CHPF                  0.019   chondroitin polymerizing factor 
CHPF2                 0.016   chondroitin polymerizing factor 2 
LYZL2                 0.010   lysozyme-like 2 
TTN                   0.006   titin isoform N2-A 
TTN                   0.006   titin isoform novex-2 
TTN                   0.006   titin isoform novex-1 
TTN                   0.006   titin isoform N2-B 
GRIN2B                0.005   N-methyl-D-aspartate receptor subunit 2B precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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