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Search of human proteins with 27414491
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27414491 coiled-coil domain containing 28A [Homo sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27414491 coiled-coil domain containing 28A [Homo sapiens] 540 e-154
gi|110349769 coiled-coil domain containing 28B [Homo sapiens] 172 3e-43
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 36 0.032
gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens] 33 0.27
gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens] 33 0.27
gi|51479166 bicaudal D homolog 2 isoform 1 [Homo sapiens] 33 0.35
gi|20544168 histone cluster 1, H1t [Homo sapiens] 33 0.35
gi|21735417 bicaudal D homolog 2 isoform 2 [Homo sapiens] 33 0.35
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 32 0.60
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 32 0.60
gi|56550043 sarcolemma associated protein [Homo sapiens] 32 0.60
gi|27881501 ATP-binding cassette, sub-family A, member 12 isofor... 32 0.78
gi|30795238 ATP-binding cassette, sub-family A, member 12 isofor... 32 0.78
gi|126362971 serine/threonine kinase 10 [Homo sapiens] 31 1.0
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 31 1.3
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 31 1.3
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 31 1.3
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 31 1.3
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 31 1.3
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 31 1.3
gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens] 30 1.7
gi|10835073 N-myristoyltransferase 1 [Homo sapiens] 30 1.7
gi|56119214 GTPase, IMAP family member 6 [Homo sapiens] 30 1.7
gi|18087819 hypothetical protein LOC91283 [Homo sapiens] 30 1.7
gi|111038124 succinate dehydrogenase complex assembly factor 1 [... 30 2.3
gi|165905591 LIM domain and actin binding 1 isoform c [Homo sapi... 30 2.3
gi|165905589 LIM domain and actin binding 1 isoform a [Homo sapi... 30 2.3
gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens] 30 2.3
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 30 2.3
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 30 2.3
>gi|27414491 coiled-coil domain containing 28A [Homo sapiens]
Length = 274
Score = 540 bits (1390), Expect = e-154
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MPRAEPRATLGEQEKAGLPLGAWRLYLLRHFRKQTELRRSGSRDVTGALLVAAAVASEAV 60
MPRAEPRATLGEQEKAGLPLGAWRLYLLRHFRKQTELRRSGSRDVTGALLVAAAVASEAV
Sbjct: 1 MPRAEPRATLGEQEKAGLPLGAWRLYLLRHFRKQTELRRSGSRDVTGALLVAAAVASEAV 60
Query: 61 GSLRVAEGGPNTLLLQVLRSWPWCNKELKTMEERKVKRRSPKSFSAHCTQVVNAKKNAIP 120
GSLRVAEGGPNTLLLQVLRSWPWCNKELKTMEERKVKRRSPKSFSAHCTQVVNAKKNAIP
Sbjct: 61 GSLRVAEGGPNTLLLQVLRSWPWCNKELKTMEERKVKRRSPKSFSAHCTQVVNAKKNAIP 120
Query: 121 VSKSTGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQSTPIQHSFLTDVSDVQEMER 180
VSKSTGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQSTPIQHSFLTDVSDVQEMER
Sbjct: 121 VSKSTGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQSTPIQHSFLTDVSDVQEMER 180
Query: 181 GLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASD 240
GLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASD
Sbjct: 181 GLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASD 240
Query: 241 SNLDRLLSDLEELNSSIQKLHLADAQDVPNTSAS 274
SNLDRLLSDLEELNSSIQKLHLADAQDVPNTSAS
Sbjct: 241 SNLDRLLSDLEELNSSIQKLHLADAQDVPNTSAS 274
>gi|110349769 coiled-coil domain containing 28B [Homo sapiens]
Length = 200
Score = 172 bits (436), Expect = 3e-43
Identities = 104/202 (51%), Positives = 134/202 (66%), Gaps = 20/202 (9%)
Query: 91 MEERKVKRRSPKSFSAHCTQVVNAKKNAIPV----SKSTGFSNPASQSTSQRPKLKRVMK 146
M+++K K+RSPK A Q + +PV S S P S QR K KRV K
Sbjct: 1 MDDKK-KKRSPKPCLAQPAQAPGTLRR-VPVPTSHSGSLALGLPHLPSPKQRAKFKRVGK 58
Query: 147 EKTKPQ-GGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQ 205
EK +P G G G+ TP+QHSFLT+V+DV EME GLL+LLNDFHSG+LQAFG ECS EQ
Sbjct: 59 EKCRPVLAGGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQ 118
Query: 206 MEHVRGMQEKLARL--NLELYGELEE-----------LPEDKRKTASDSNLDRLLSDLEE 252
+EHVR MQEKLARL +L++ GE E+ LPE+++KT +D NLD+LLS+LE+
Sbjct: 119 LEHVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLED 178
Query: 253 LNSSIQKLHLADAQDVPNTSAS 274
L++SIQKLHLA+ + SA+
Sbjct: 179 LSNSIQKLHLAENAEPEEQSAA 200
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 36.2 bits (82), Expect = 0.032
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 202 SIEQMEHVRGMQEKLARLNLELYGELEELPED-------KRKTASDSNLDRLLSDLEELN 254
++E EH+R +E+L+R+ EL L + K + A NL + LS+LE+LN
Sbjct: 606 NLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKEREAEVRNLKQNLSELEQLN 665
Query: 255 SSIQKL 260
+++K+
Sbjct: 666 ENLKKV 671
>gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens]
Length = 2039
Score = 33.1 bits (74), Expect = 0.27
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 85 NKELKTMEER-KVKRRSPKSFSAHCTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKR 143
+KE EER K+K+ S KSF + + ++ IP K + F++ + + L
Sbjct: 719 SKERNFKEERDKIKKESEKSFREEKIKDLKEERENIPTDKDSEFTSLGMSAIEESIGLHL 778
Query: 144 VMKE-KTKPQGGEGKGAQSTPIQHSFLTDVSDVQEMER 180
V KE + Q K ++ P + S + + D+++MER
Sbjct: 779 VEKEIDIEKQEKHIKESKEKPEKRSQIKE-KDIEKMER 815
>gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens]
Length = 2062
Score = 33.1 bits (74), Expect = 0.27
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 85 NKELKTMEER-KVKRRSPKSFSAHCTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKR 143
+KE EER K+K+ S KSF + + ++ IP K + F++ + + L
Sbjct: 742 SKERNFKEERDKIKKESEKSFREEKIKDLKEERENIPTDKDSEFTSLGMSAIEESIGLHL 801
Query: 144 VMKE-KTKPQGGEGKGAQSTPIQHSFLTDVSDVQEMER 180
V KE + Q K ++ P + S + + D+++MER
Sbjct: 802 VEKEIDIEKQEKHIKESKEKPEKRSQIKE-KDIEKMER 838
>gi|51479166 bicaudal D homolog 2 isoform 1 [Homo sapiens]
Length = 855
Score = 32.7 bits (73), Expect = 0.35
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 142 KRVMKEKTKPQGGEGKGAQSTPIQHSFLTD--VSDVQEMERGLLSLLNDFHSGKLQAFGN 199
K + KT EG S + L++ +S++Q++++ L+ + + +G L +
Sbjct: 310 KLPLDNKTSTPKKEGLAPPSPSLVSDLLSELNISEIQKLKQQLMQMERE-KAGLLATLQD 368
Query: 200 ECSIEQMEHVRG----MQEKLARLNLELYGELEELPEDKRKTASDSNLDR 245
+ +Q+EH RG QEK+ RL L +R+TA D+ DR
Sbjct: 369 --TQKQLEHTRGSLSEQQEKVTRLTENLSALRRLQASKERQTALDNEKDR 416
>gi|20544168 histone cluster 1, H1t [Homo sapiens]
Length = 207
Score = 32.7 bits (73), Expect = 0.35
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 97 KRRSPKSFSAHCTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKRVMKEKT-----KP 151
K+ PKS + + V+AK + +S+ + +P + T++R K R KT K
Sbjct: 113 KKVIPKSTRSKAKKSVSAKTKKLVLSRDS--KSPKTAKTNKRAKKPRATTPKTVRSGRKA 170
Query: 152 QGGEGKGAQSTPIQ 165
+G +GK Q +P++
Sbjct: 171 KGAKGKQQQKSPVK 184
>gi|21735417 bicaudal D homolog 2 isoform 2 [Homo sapiens]
Length = 824
Score = 32.7 bits (73), Expect = 0.35
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 142 KRVMKEKTKPQGGEGKGAQSTPIQHSFLTD--VSDVQEMERGLLSLLNDFHSGKLQAFGN 199
K + KT EG S + L++ +S++Q++++ L+ + + +G L +
Sbjct: 310 KLPLDNKTSTPKKEGLAPPSPSLVSDLLSELNISEIQKLKQQLMQMERE-KAGLLATLQD 368
Query: 200 ECSIEQMEHVRG----MQEKLARLNLELYGELEELPEDKRKTASDSNLDR 245
+ +Q+EH RG QEK+ RL L +R+TA D+ DR
Sbjct: 369 --TQKQLEHTRGSLSEQQEKVTRLTENLSALRRLQASKERQTALDNEKDR 416
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 32.0 bits (71), Expect = 0.60
Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 92 EERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKSTG------FSNPASQSTSQRPKLKRVM 145
+E+ +K K A Q + K I + T +N A++ KLK V
Sbjct: 941 KEKIMKELEIKEMMARHKQELTEKDATIASLEETNRTLTSDVANLANEKEELNNKLKDVQ 1000
Query: 146 KEKTKPQGGE-GKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIE 204
++ ++ + E A + LT+ + + L ++N K GN+ +
Sbjct: 1001 EQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKR---GNDTDVR 1057
Query: 205 QME--------HVRGMQEKLARLNLELYGELEELP-----EDKRKTASDSNLDRLLSDLE 251
+ E ++ +EKL + ++ EL E+ E + + LD SD+E
Sbjct: 1058 RKEKENRKLHMELKSEREKLTQQMIKYQKELNEMQAQIAEESQIRIELQMTLDSKDSDIE 1117
Query: 252 ELNSSIQKLHL 262
+L S +Q LH+
Sbjct: 1118 QLRSQLQALHI 1128
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 32.0 bits (71), Expect = 0.60
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 135 TSQRPKLKRVMKEKTKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKL 194
T Q +LKR M+E+TK + QS+ L + + ++ + L + ++
Sbjct: 1313 TQQLEELKRQMEEETKAKNAMAHALQSSRHDCDLLREQYEEEQEAKAELQRALSKANSEV 1372
Query: 195 QAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTAS-DSNLDRLLSDLEEL 253
+ + + ++ ++E +L L E K AS + RL ++E+L
Sbjct: 1373 AQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEENTETANSKCASLEKTKQRLQGEVEDL 1432
Query: 254 NSSIQKLHLADA 265
+++ H A A
Sbjct: 1433 MRDLERSHTACA 1444
>gi|56550043 sarcolemma associated protein [Homo sapiens]
Length = 811
Score = 32.0 bits (71), Expect = 0.60
Identities = 49/254 (19%), Positives = 100/254 (39%), Gaps = 22/254 (8%)
Query: 30 HFRKQTELRRSGSRDVTGALLVAAAVASEAVGSLRVAEGGPNTLLLQVLRSWPWCNKELK 89
H ++ E + R++ A + L+VAEG + + ++
Sbjct: 288 HLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAEKKELQHKID 347
Query: 90 TMEERKVKRRSPKSFSAHCTQVVNAKKNAIP---VSKSTGFSNPASQSTSQRPKL----- 141
MEE++ + ++ N + A+ +SKS G Q + KL
Sbjct: 348 EMEEKEQELQAKIEALQADNDFTNERLTALQEHLLSKSGGDCTFIHQFIECQKKLIVEGH 407
Query: 142 -KRVMKEKTKPQGGEGKGAQS------TPIQHSFLTDVSDVQEMERGL------LSLLND 188
+ ++E + + + +S +P + D +D Q E+ L +SLL D
Sbjct: 408 LTKAVEETKLSKENQTRAKESDFSDTLSPSKEKSSDDTTDAQMDEQDLNEPLAKVSLLKD 467
Query: 189 FHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASDSNLDRLLS 248
G + I+ + ++LAR + + EL+ L E++RK A + ++
Sbjct: 468 DLQGAQSEIEAKQEIQHLRKELIEAQELARTSKQKCFELQALLEEERK-AYRNQVEESTK 526
Query: 249 DLEELNSSIQKLHL 262
++ L + +Q+LH+
Sbjct: 527 QIQVLQAQLQRLHI 540
>gi|27881501 ATP-binding cassette, sub-family A, member 12 isoform b
[Homo sapiens]
Length = 2277
Score = 31.6 bits (70), Expect = 0.78
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 203 IEQMEHVRGM---QEKLARLNLELYGELEELPEDKRKTASDSN--LDRLLS-----DLEE 252
IE M HV EK +L LE++ +EEL ED R+T SN +D+LL+ + E
Sbjct: 218 IEAMLHVNNSADASEKPGQL-LEMFKNVEELKEDLRRTTGMSNRTIDKLLAIPIPDNRAE 276
Query: 253 LNSSIQKLHLAD 264
+ S + LH D
Sbjct: 277 IISQVFWLHSCD 288
>gi|30795238 ATP-binding cassette, sub-family A, member 12 isoform a
[Homo sapiens]
Length = 2595
Score = 31.6 bits (70), Expect = 0.78
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 203 IEQMEHVRGM---QEKLARLNLELYGELEELPEDKRKTASDSN--LDRLLS-----DLEE 252
IE M HV EK +L LE++ +EEL ED R+T SN +D+LL+ + E
Sbjct: 536 IEAMLHVNNSADASEKPGQL-LEMFKNVEELKEDLRRTTGMSNRTIDKLLAIPIPDNRAE 594
Query: 253 LNSSIQKLHLAD 264
+ S + LH D
Sbjct: 595 IISQVFWLHSCD 606
>gi|126362971 serine/threonine kinase 10 [Homo sapiens]
Length = 968
Score = 31.2 bits (69), Expect = 1.0
Identities = 15/77 (19%), Positives = 37/77 (48%)
Query: 168 FLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGEL 227
F T++ +++ ++ + + H+ + + +EQ QE+L + E+ E+
Sbjct: 609 FDTELENLERQQKQQVEKMEQDHAVRRREEARRIRLEQDRDYTRFQEQLKLMKKEVKNEV 668
Query: 228 EELPEDKRKTASDSNLD 244
E+LP +RK + ++
Sbjct: 669 EKLPRQQRKESMKQKME 685
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sapiens]
Length = 1293
Score = 30.8 bits (68), Expect = 1.3
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 36/184 (19%)
Query: 69 GPNTLLLQVLRSWPWCNKELKTME----ERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKS 124
GP L S W N + K + VK P++ + N KN +SKS
Sbjct: 1046 GPPNQWASDLVSSIWSNADTKNSNMGFWDDAVKEVGPRNST-------NKNKNNASLSKS 1098
Query: 125 TGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQ------------STPIQHSFLTDV 172
G SN ++ + KL ++ + K Q G + + P SFL +V
Sbjct: 1099 VGVSNRQNKKVEEEEKLLKLFQGVNKAQDGFTQWCEQMLHALNTANNLDVPTFVSFLKEV 1158
Query: 173 SDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPE 232
E+ + + L D + E E + E+ A+ + ++LP+
Sbjct: 1159 ESPYEVHDYIRAYLGD-------------TSEAKEFAKQFLERRAKQKANQQRQQQQLPQ 1205
Query: 233 DKRK 236
+++
Sbjct: 1206 QQQQ 1209
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sapiens]
Length = 1320
Score = 30.8 bits (68), Expect = 1.3
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 36/184 (19%)
Query: 69 GPNTLLLQVLRSWPWCNKELKTME----ERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKS 124
GP L S W N + K + VK P++ + N KN +SKS
Sbjct: 1073 GPPNQWASDLVSSIWSNADTKNSNMGFWDDAVKEVGPRNST-------NKNKNNASLSKS 1125
Query: 125 TGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQ------------STPIQHSFLTDV 172
G SN ++ + KL ++ + K Q G + + P SFL +V
Sbjct: 1126 VGVSNRQNKKVEEEEKLLKLFQGVNKAQDGFTQWCEQMLHALNTANNLDVPTFVSFLKEV 1185
Query: 173 SDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPE 232
E+ + + L D + E E + E+ A+ + ++LP+
Sbjct: 1186 ESPYEVHDYIRAYLGD-------------TSEAKEFAKQFLERRAKQKANQQRQQQQLPQ 1232
Query: 233 DKRK 236
+++
Sbjct: 1233 QQQQ 1236
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sapiens]
Length = 1299
Score = 30.8 bits (68), Expect = 1.3
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 36/184 (19%)
Query: 69 GPNTLLLQVLRSWPWCNKELKTME----ERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKS 124
GP L S W N + K + VK P++ + N KN +SKS
Sbjct: 1052 GPPNQWASDLVSSIWSNADTKNSNMGFWDDAVKEVGPRNST-------NKNKNNASLSKS 1104
Query: 125 TGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQ------------STPIQHSFLTDV 172
G SN ++ + KL ++ + K Q G + + P SFL +V
Sbjct: 1105 VGVSNRQNKKVEEEEKLLKLFQGVNKAQDGFTQWCEQMLHALNTANNLDVPTFVSFLKEV 1164
Query: 173 SDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPE 232
E+ + + L D + E E + E+ A+ + ++LP+
Sbjct: 1165 ESPYEVHDYIRAYLGD-------------TSEAKEFAKQFLERRAKQKANQQRQQQQLPQ 1211
Query: 233 DKRK 236
+++
Sbjct: 1212 QQQQ 1215
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapiens]
Length = 1299
Score = 30.8 bits (68), Expect = 1.3
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 36/184 (19%)
Query: 69 GPNTLLLQVLRSWPWCNKELKTME----ERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKS 124
GP L S W N + K + VK P++ + N KN +SKS
Sbjct: 1052 GPPNQWASDLVSSIWSNADTKNSNMGFWDDAVKEVGPRNST-------NKNKNNASLSKS 1104
Query: 125 TGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQ------------STPIQHSFLTDV 172
G SN ++ + KL ++ + K Q G + + P SFL +V
Sbjct: 1105 VGVSNRQNKKVEEEEKLLKLFQGVNKAQDGFTQWCEQMLHALNTANNLDVPTFVSFLKEV 1164
Query: 173 SDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPE 232
E+ + + L D + E E + E+ A+ + ++LP+
Sbjct: 1165 ESPYEVHDYIRAYLGD-------------TSEAKEFAKQFLERRAKQKANQQRQQQQLPQ 1211
Query: 233 DKRK 236
+++
Sbjct: 1212 QQQQ 1215
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 160 QSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIE-QMEHVRGMQEKLAR 218
Q ++ T S+V++ + + SL + K +IE +++ Q +L +
Sbjct: 947 QVNDLKERLKTSTSNVEQYQAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEK 1006
Query: 219 LNLELYGELEELPEDKRKTASDSNLDRLLSDLEELNSSIQ 258
+E+ E +EL +DKR+ ++++ LS+L++ SS+Q
Sbjct: 1007 KLMEVEKEKQELQDDKRRAI--ESMEQQLSELKKTLSSVQ 1044
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 199 NECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASDSNLDRLLS-----DLEEL 253
+ C+ +M V+GMQEK GEL+EL + S S R + LEEL
Sbjct: 97 DNCNSLRMSPVKGMQEK---------GELDELGDKCDSNVSSSKKRRHRTTFTSLQLEEL 147
Query: 254 NSSIQKLHLAD 264
QK H D
Sbjct: 148 EKVFQKTHYPD 158
>gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens]
Length = 1580
Score = 30.4 bits (67), Expect = 1.7
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 119 IPVSKSTGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQSTPIQHSFLTDVS 173
+P S NP + +TS K V++ T+P+GG+ + S+P S +V+
Sbjct: 1021 VPRFSSLSSCNPPAMATSAE-KRSLVLQNYTRPEGGQSRNFHSSPCPPSITENVT 1074
>gi|10835073 N-myristoyltransferase 1 [Homo sapiens]
Length = 496
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 107 HCTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQSTPIQH 166
HC+ N + N S + G +PA+ + +++ K K+ +K K +G E AQ P++
Sbjct: 29 HCSDCENEEDN----SYNRGGLSPANDTGAKKKKKKQ---KKKKEKGSETDSAQDQPVKM 81
Query: 167 SFLTDVSDVQEMERGL 182
+ L +QE+++ +
Sbjct: 82 NSL-PAERIQEIQKAI 96
>gi|56119214 GTPase, IMAP family member 6 [Homo sapiens]
Length = 292
Score = 30.4 bits (67), Expect = 1.7
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 127 FSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQSTPIQHSFLTDVSDVQE 177
+SN A Q T Q +LK + + Q +G+G++ P + S+L +S +Q+
Sbjct: 231 YSNKAYQYTQQNFRLKELQER----QVSQGQGSEDVPGEESWLEGLSQIQK 277
>gi|18087819 hypothetical protein LOC91283 [Homo sapiens]
Length = 275
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 102 KSFSAHCTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQS 161
+SF+ ++ + +K I G S P ++ R + + KT +G K +
Sbjct: 140 ESFAVSNRELCDDEKEFIHFPVCEGTSQPEPSCSAVRITANKNYRSKTSQEGALKKMHEE 199
Query: 162 TPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEH 208
Q + + +Q +N+ H K+Q EC + + EH
Sbjct: 200 EHHQQMSILQLQLIQ---------MNEVHVAKIQQIERECEMAEEEH 237
>gi|111038124 succinate dehydrogenase complex assembly factor 1
[Homo sapiens]
Length = 115
Score = 30.0 bits (66), Expect = 2.3
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 2 PRAEPRATLGEQEKAGLPLG-AWRL-YLLRHFRKQTELRRSGSRDVTGALLVAAAVASEA 59
P AE R ++ AGLP R+ YL R R+Q +L RSG GA + A E
Sbjct: 26 PGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQLLRSGHATAMGAFVRPRAPTGEP 85
Query: 60 VG 61
G
Sbjct: 86 GG 87
>gi|165905591 LIM domain and actin binding 1 isoform c [Homo
sapiens]
Length = 600
Score = 30.0 bits (66), Expect = 2.3
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 11 GEQEKAGLPLGAWRLYLLRHFRKQTELRRSGSRDVTGALLVAAAVASEAVGSLRVAEGGP 70
G+ EK +PL ++ + QT++ R+ SR +G + + S ++ L + G
Sbjct: 25 GKIEKYNVPLNRLKMMFEKGEPTQTKILRAQSRSASGRKI---SENSYSLDDLEIGPGQL 81
Query: 71 NTLLLQVLRSWPWCNKELKTMEERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKSTGFSNP 130
++ ++ N EL + E +K R K +A Q S ST ++N
Sbjct: 82 SSSTFDSEKNESRRNLELPRLSETSIKDRMAKYQAAVSKQ-----------SSSTNYTNE 130
Query: 131 ASQSTSQRPKLKRVMKEKTKP 151
S + K KE P
Sbjct: 131 LKASGGEIKIHKMEQKENVPP 151
>gi|165905589 LIM domain and actin binding 1 isoform a [Homo
sapiens]
Length = 760
Score = 30.0 bits (66), Expect = 2.3
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 11 GEQEKAGLPLGAWRLYLLRHFRKQTELRRSGSRDVTGALLVAAAVASEAVGSLRVAEGGP 70
G+ EK +PL ++ + QT++ R+ SR +G + + S ++ L + G
Sbjct: 185 GKIEKYNVPLNRLKMMFEKGEPTQTKILRAQSRSASGRKI---SENSYSLDDLEIGPGQL 241
Query: 71 NTLLLQVLRSWPWCNKELKTMEERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKSTGFSNP 130
++ ++ N EL + E +K R K +A Q S ST ++N
Sbjct: 242 SSSTFDSEKNESRRNLELPRLSETSIKDRMAKYQAAVSKQ-----------SSSTNYTNE 290
Query: 131 ASQSTSQRPKLKRVMKEKTKP 151
S + K KE P
Sbjct: 291 LKASGGEIKIHKMEQKENVPP 311
>gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens]
Length = 759
Score = 30.0 bits (66), Expect = 2.3
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 11 GEQEKAGLPLGAWRLYLLRHFRKQTELRRSGSRDVTGALLVAAAVASEAVGSLRVAEGGP 70
G+ EK +PL ++ + QT++ R+ SR +G + + S ++ L + G
Sbjct: 185 GKIEKYNVPLNRLKMMFEKGEPTQTKILRAQSRSASGRKI---SENSYSLDDLEIGPGQL 241
Query: 71 NTLLLQVLRSWPWCNKELKTMEERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKSTGFSNP 130
++ ++ N EL + E +K R K +A Q S ST ++N
Sbjct: 242 SSSTFDSEKNESRRNLELPRLSETSIKDRMAKYQAAVSKQ-----------SSSTNYTNE 290
Query: 131 ASQSTSQRPKLKRVMKEKTKP 151
S + K KE P
Sbjct: 291 LKASGGEIKIHKMEQKENVPP 311
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 30.0 bits (66), Expect = 2.3
Identities = 41/212 (19%), Positives = 82/212 (38%), Gaps = 19/212 (8%)
Query: 58 EAVGSLRVAEGGPNTLLLQVLRSWPWCNKELKTM----EERKVKRRSPKSFSAHCTQVVN 113
E V E NT L+ + + K+L+ M +E+ + R + Q +
Sbjct: 2032 EQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLE 2091
Query: 114 AKKNAIPVSKSTGFSNPASQSTSQRPKLKRVMKEKTKPQGGEGKGAQSTPIQHSFLTDVS 173
+ +P F + T + +L +KEKT K ++ + D+
Sbjct: 2092 QQLKVVP-----RFQPISEHQTREVEQLANHLKEKTD------KCSELLLSKEQLQRDIQ 2140
Query: 174 DVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPED 233
+ E L + + L + +E +H ++ K L+LE+ + E D
Sbjct: 2141 ERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAK-PELSLEVQLQAERDAID 2199
Query: 234 KRK---TASDSNLDRLLSDLEELNSSIQKLHL 262
+++ T + L++ +LE N +Q+LH+
Sbjct: 2200 RKEKEITNLEEQLEQFREELENKNEEVQQLHM 2231
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 30.0 bits (66), Expect = 2.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 225 GELEELPEDKRKTASDSNLDRLLSDLEELNSSIQKLHLADAQDVPNTSA 273
G+ LP + RKT D +L ++LE ++ L+ A + +VP +SA
Sbjct: 612 GDCSILPREDRKTNLDKDLSLCQTELEADLEKMETLNKAPSANVPQSSA 660
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,147,159
Number of Sequences: 37866
Number of extensions: 446913
Number of successful extensions: 1534
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 87
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.