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Search of human proteins with 26667177
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|26667177 mitochondrial ribosomal protein L46 [Homo sapiens]
(279 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|26667177 mitochondrial ribosomal protein L46 [Homo sapiens] 561 e-160
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 39 0.004
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 39 0.004
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 39 0.004
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 39 0.004
gi|33946313 ninein isoform 4 [Homo sapiens] 37 0.015
gi|33946321 ninein isoform 5 [Homo sapiens] 37 0.015
gi|148536871 ninein isoform 1 [Homo sapiens] 37 0.015
gi|148536869 ninein isoform 2 [Homo sapiens] 37 0.015
gi|38348390 family with sequence similarity 89, member A [Homo s... 35 0.073
gi|221219020 NYD-SP11 protein [Homo sapiens] 35 0.095
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 33 0.21
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 33 0.28
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 33 0.28
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 33 0.28
gi|118918413 MICAL C-terminal like [Homo sapiens] 33 0.36
gi|81295816 nasopharyngeal epithelium specific protein 1 [Homo s... 33 0.36
gi|169208517 PREDICTED: similar to Golgin subfamily A member 8-l... 32 0.47
gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-l... 32 0.47
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 32 0.47
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 32 0.47
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 32 0.47
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 32 0.62
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 32 0.62
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 32 0.62
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 31 1.1
gi|91208420 bassoon protein [Homo sapiens] 31 1.1
gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens] 31 1.1
gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens] 31 1.1
gi|13128864 histone deacetylase 6 [Homo sapiens] 31 1.4
>gi|26667177 mitochondrial ribosomal protein L46 [Homo sapiens]
Length = 279
Score = 561 bits (1447), Expect = e-160
Identities = 279/279 (100%), Positives = 279/279 (100%)
Query: 1 MAAPVRRTLLGVAGGWRRFERLWAGSLSSRSLALAAAPSSNGSPWRLLGALCLQRPPVVS 60
MAAPVRRTLLGVAGGWRRFERLWAGSLSSRSLALAAAPSSNGSPWRLLGALCLQRPPVVS
Sbjct: 1 MAAPVRRTLLGVAGGWRRFERLWAGSLSSRSLALAAAPSSNGSPWRLLGALCLQRPPVVS 60
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL
Sbjct: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
Query: 121 EDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQP 180
EDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQP
Sbjct: 121 EDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQP 180
Query: 181 GETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLT 240
GETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLT
Sbjct: 181 GETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLT 240
Query: 241 GDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFVSDL 279
GDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFVSDL
Sbjct: 241 GDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFVSDL 279
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 39.3 bits (90), Expect = 0.004
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 56 PPVVSKPLTPLQEEMASLLQQIE-IERSLYSDHE------LRALDENQRLAKKKADLHDE 108
PP V+ + LQ+E L Q++E +E L S E L + ++ QRL +++ L ++
Sbjct: 290 PPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQ 349
Query: 109 E----DEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREK 164
E EQ+ L Q+ +QK LQ + G R+ + +++ L ++ +R R +
Sbjct: 350 EAQRVREQERLCEQNERLREQQKTLQ-EQGERLRKQEQR-----LRKQEERLRKEEERLQ 403
Query: 165 FGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLGNAPC 210
++ +W + W+ E L+ ER LS+N+ K L C
Sbjct: 404 KQEKRLWDQEERLWKKEERLQKQEER--LALSQNHKLDKQLAEPQC 447
Score = 28.9 bits (63), Expect = 5.2
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 75 QQIEIERSLYSDHELRALDENQRLAKKKADLHDEED--------EQDILLAQ---DLEDM 123
+++ E E R D+ +RL KK+ L +E+ + D LA+ ED+
Sbjct: 393 ERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFEDL 452
Query: 124 WEQKFLQFKLGARITEADEKNDRTSL------NRKLDRNLVLLVREKFGDQDVWILPQAE 177
+K +L ++ E EK D L N++L+ L L+ GD + + E
Sbjct: 453 NNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQLETQLSLVALPGEGDGGQHLDSEEE 512
Query: 178 WQPGET 183
P T
Sbjct: 513 EAPRPT 518
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 39.3 bits (90), Expect = 0.004
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 56 PPVVSKPLTPLQEEMASLLQQIE-IERSLYSDHE------LRALDENQRLAKKKADLHDE 108
PP V+ + LQ+E L Q++E +E L S E L + ++ QRL +++ L ++
Sbjct: 290 PPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQ 349
Query: 109 E----DEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREK 164
E EQ+ L Q+ +QK LQ + G R+ + +++ L ++ +R R +
Sbjct: 350 EAQRVREQERLCEQNERLREQQKTLQ-EQGERLRKQEQR-----LRKQEERLRKEEERLQ 403
Query: 165 FGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLGNAPC 210
++ +W + W+ E L+ ER LS+N+ K L C
Sbjct: 404 KQEKRLWDQEERLWKKEERLQKQEER--LALSQNHKLDKQLAEPQC 447
Score = 28.9 bits (63), Expect = 5.2
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 75 QQIEIERSLYSDHELRALDENQRLAKKKADLHDEED--------EQDILLAQ---DLEDM 123
+++ E E R D+ +RL KK+ L +E+ + D LA+ ED+
Sbjct: 393 ERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFEDL 452
Query: 124 WEQKFLQFKLGARITEADEKNDRTSL------NRKLDRNLVLLVREKFGDQDVWILPQAE 177
+K +L ++ E EK D L N++L+ L L+ GD + + E
Sbjct: 453 NNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQLETQLSLVALPGEGDGGQHLDSEEE 512
Query: 178 WQPGET 183
P T
Sbjct: 513 EAPRPT 518
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 39.3 bits (90), Expect = 0.004
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 56 PPVVSKPLTPLQEEMASLLQQIE-IERSLYSDHE------LRALDENQRLAKKKADLHDE 108
PP V+ + LQ+E L Q++E +E L S E L + ++ QRL +++ L ++
Sbjct: 290 PPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQ 349
Query: 109 E----DEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREK 164
E EQ+ L Q+ +QK LQ + G R+ + +++ L ++ +R R +
Sbjct: 350 EVQRVREQERLCEQNERLREQQKTLQ-EQGERLRKQEQR-----LRKQEERLRKEEERLQ 403
Query: 165 FGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLGNAPC 210
++ +W + W+ E L+ ER LS+N+ K L C
Sbjct: 404 KQEKRLWDQEERLWKKEERLQKQEER--LALSQNHKLDKQLAEPQC 447
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 39.3 bits (90), Expect = 0.004
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 56 PPVVSKPLTPLQEEMASLLQQIE-IERSLYSDHE------LRALDENQRLAKKKADLHDE 108
PP V+ + LQ+E L Q++E +E L S E L + ++ QRL +++ L ++
Sbjct: 290 PPAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQ 349
Query: 109 E----DEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREK 164
E EQ+ L Q+ +QK LQ + G R+ + +++ L ++ +R R +
Sbjct: 350 EAQRVREQERLCEQNERLREQQKTLQ-EQGERLRKQEQR-----LRKQEERLRKEEERLQ 403
Query: 165 FGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLGNAPC 210
++ +W + W+ E L+ ER LS+N+ K L C
Sbjct: 404 KQEKRLWDQEERLWKKEERLQKQEER--LALSQNHKLDKQLAEPQC 447
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 37.4 bits (85), Expect = 0.015
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 66 LQEEMASLLQQIEIERSLYSDHELRALDEN--QRLAKKKADLHDEEDE-------QDILL 116
L+ MAS + +++ LR LDE +R+A K +L E ++ Q + L
Sbjct: 402 LKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAGKQRLEL 461
Query: 117 AQDLEDM-WEQKFLQFKLGARITE-----------ADEKNDRTSLNRKLDRNLVLLVREK 164
Q++E E+ +++ +L + E A++ + +L KL RNL ++ EK
Sbjct: 462 EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEK 521
Query: 165 FGDQD 169
FGD D
Sbjct: 522 FGDLD 526
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 37.4 bits (85), Expect = 0.015
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 66 LQEEMASLLQQIEIERSLYSDHELRALDEN--QRLAKKKADLHDEEDE-------QDILL 116
L+ MAS + +++ LR LDE +R+A K +L E ++ Q + L
Sbjct: 396 LKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAGKQRLEL 455
Query: 117 AQDLEDM-WEQKFLQFKLGARITE-----------ADEKNDRTSLNRKLDRNLVLLVREK 164
Q++E E+ +++ +L + E A++ + +L KL RNL ++ EK
Sbjct: 456 EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEK 515
Query: 165 FGDQD 169
FGD D
Sbjct: 516 FGDLD 520
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 37.4 bits (85), Expect = 0.015
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 66 LQEEMASLLQQIEIERSLYSDHELRALDEN--QRLAKKKADLHDEEDE-------QDILL 116
L+ MAS + +++ LR LDE +R+A K +L E ++ Q + L
Sbjct: 396 LKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAGKQRLEL 455
Query: 117 AQDLEDM-WEQKFLQFKLGARITE-----------ADEKNDRTSLNRKLDRNLVLLVREK 164
Q++E E+ +++ +L + E A++ + +L KL RNL ++ EK
Sbjct: 456 EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEK 515
Query: 165 FGDQD 169
FGD D
Sbjct: 516 FGDLD 520
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 37.4 bits (85), Expect = 0.015
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 21/125 (16%)
Query: 66 LQEEMASLLQQIEIERSLYSDHELRALDEN--QRLAKKKADLHDEEDE-------QDILL 116
L+ MAS + +++ LR LDE +R+A K +L E ++ Q + L
Sbjct: 396 LKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAGKQRLEL 455
Query: 117 AQDLEDM-WEQKFLQFKLGARITE-----------ADEKNDRTSLNRKLDRNLVLLVREK 164
Q++E E+ +++ +L + E A++ + +L KL RNL ++ EK
Sbjct: 456 EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEK 515
Query: 165 FGDQD 169
FGD D
Sbjct: 516 FGDLD 520
>gi|38348390 family with sequence similarity 89, member A [Homo
sapiens]
Length = 184
Score = 35.0 bits (79), Expect = 0.073
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 11 GVAGGWRRFERLWAGSLSSRSLALAAAPSSNGSPWRLLGALCLQRPPVVSKPLTPLQEEM 70
G +GGWR ERL+A + P G+ L A +PP + L L++EM
Sbjct: 42 GASGGWRHLERLYAQKSRIQDELSRGGPGGGGARAAALPA----KPPNLDAALALLRKEM 97
Query: 71 ASLLQ-QIEIERSLYSDHE 88
L Q + + LYS +E
Sbjct: 98 VGLRQLDMSLLCQLYSLYE 116
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 34.7 bits (78), Expect = 0.095
Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 24/121 (19%)
Query: 68 EEMASLLQQIEIERSLYSDHELRALDENQR----LAKKKADLHDEEDEQDILL------- 116
EEM SLL ++E + SL S+ E +E +R + +++ + +EE+ ++ +
Sbjct: 2228 EEMESLLDELEKQESLSSEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEEEK 2287
Query: 117 -----------AQDLEDMWEQK--FLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVRE 163
Q+ E+++E+K + + +++ +E+ + SL ++DR +L +E
Sbjct: 2288 KKKKKEKKKEEVQEKEEVFEEKEEIMSEEETESLSDEEEEEESCSLEEEVDREKEILKKE 2347
Query: 164 K 164
K
Sbjct: 2348 K 2348
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 33.5 bits (75), Expect = 0.21
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 67 QEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQ 126
QE+ A + +Q E R + E + ++ +++ +++ +H++E ++ Q+ E+MW Q
Sbjct: 412 QEQEAKMWRQEEKIR----EQEEKIREQEKKMWRQEEKIHEQEKIREEEKRQEQEEMWRQ 467
Query: 127 KFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAE--WQPGETL 184
+ + + I EK RK + V EK DQ+ I Q E W+ E +
Sbjct: 468 E-EKIREQEEIWRQKEKMHEQEKIRKQEEK-VWRQEEKMHDQEEKIREQEEKMWRQEEKI 525
Query: 185 RGTAER 190
R E+
Sbjct: 526 REQEEK 531
Score = 30.4 bits (67), Expect = 1.8
Identities = 16/83 (19%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 67 QEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEED---EQDILLAQDLEDM 123
QEE +++ + + E + ++ +++ +++ + ++E+ EQ+ ++ + E M
Sbjct: 556 QEEKMQEQEKMRRQEEKIREQEEKIREQKEKIREQEEKIWEQEEKIREQEEMMQEQEEKM 615
Query: 124 WEQKFLQFKLGARITEADEKNDR 146
WEQ+ + ++ E +EK R
Sbjct: 616 WEQEEKMCEQEEKMQEQEEKMRR 638
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 33.1 bits (74), Expect = 0.28
Identities = 32/147 (21%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 66 LQEEMASLLQQI-EIERSLYSDHELRALDENQRLAKKKADLHDEEDE---QDILLAQDLE 121
L+E M +++ E+E + + E + ++ +++ +++ + ++E++ Q+ LL Q+ E
Sbjct: 439 LEEMMQDQEEKLREVEEKMQEEEE-KMQEQEEKIQRQEEKIQEQEEKTWRQEKLLKQE-E 496
Query: 122 DMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPG 181
+WEQ+ ++ ++ E +EK K+ R EK +Q+V + Q E
Sbjct: 497 KIWEQEEKMWRQEEKMWEQEEKMQEQ--EEKMQRQ-----EEKMREQEVRLWQQEEKMQE 549
Query: 182 ETLRGTAERTLATLSENNMEAKFLGNA 208
+ +R + L + +A+ LG A
Sbjct: 550 QEVR--LQELEERLGKLGQKAELLGGA 574
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 66 LQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEED---EQDILLAQDLED 122
LQ A L Q+E E L++ L + +++ +++ + ++E+ EQ++ + + E
Sbjct: 271 LQSVSAKLQAQVE-ENELWN---LLNQQQEEKMWRQEEKIQEQEEKMCEQELKIREQEEK 326
Query: 123 MWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAE----- 177
MW Q+ + +I E ++K R + + EK Q+ I Q E
Sbjct: 327 MWRQEEKMHEQEEKIREQEDKMWRQEEKIREQEEKIREQEEKMWRQEEKIREQDEKIQEQ 386
Query: 178 ----WQPGETLRGTAER 190
W+ E +R E+
Sbjct: 387 EEEMWRQEEKIREQEEK 403
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 33.1 bits (74), Expect = 0.28
Identities = 32/147 (21%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 66 LQEEMASLLQQI-EIERSLYSDHELRALDENQRLAKKKADLHDEEDE---QDILLAQDLE 121
L+E M +++ E+E + + E + ++ +++ +++ + ++E++ Q+ LL Q+ E
Sbjct: 439 LEEMMQDQEEKLREVEEKMQEEEE-KMQEQEEKIQRQEEKIQEQEEKTWRQEKLLKQE-E 496
Query: 122 DMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPG 181
+WEQ+ ++ ++ E +EK K+ R EK +Q+V + Q E
Sbjct: 497 KIWEQEEKMWRQEEKMWEQEEKMQEQ--EEKMQRQ-----EEKMREQEVRLWQQEEKMQE 549
Query: 182 ETLRGTAERTLATLSENNMEAKFLGNA 208
+ +R + L + +A+ LG A
Sbjct: 550 QEVR--LQELEERLGKLGQKAELLGGA 574
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 66 LQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEED---EQDILLAQDLED 122
LQ A L Q+E E L++ L + +++ +++ + ++E+ EQ++ + + E
Sbjct: 271 LQSVSAKLQAQVE-ENELWN---LLNQQQEEKMWRQEEKIQEQEEKMCEQELKIREQEEK 326
Query: 123 MWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAE----- 177
MW Q+ + +I E ++K R + + EK Q+ I Q E
Sbjct: 327 MWRQEEKMHEQEEKIREQEDKMWRQEEKIREQEEKIREQEEKMWRQEEKIREQDEKIQEQ 386
Query: 178 ----WQPGETLRGTAER 190
W+ E +R E+
Sbjct: 387 EEEMWRQEEKIREQEEK 403
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
K + L+ + L ++E E+ ++ ++ L +++R K+ EED ++IL QDL
Sbjct: 1814 KQIQKLEARVRELESEVESEQK-HNVEAVKGLRKHERRVKELT-YQTEEDRKNILRLQDL 1871
Query: 121 EDMWEQKFLQFKLGARITEADEKNDRTSLN----RKLDRNL 157
D LQ K+ A +A+E +++++N RKL L
Sbjct: 1872 VDK-----LQTKVKAYKRQAEEAEEQSNVNLAKFRKLQHEL 1907
>gi|118918413 MICAL C-terminal like [Homo sapiens]
Length = 695
Score = 32.7 bits (73), Expect = 0.36
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 53 LQRPPVVSKPLTPLQE-EMASLLQQIEIERSLYSDHELRALDENQ------RLAKKKADL 105
L + + + L ++E + AS +Q + +E++L + + DE Q +L +K L
Sbjct: 541 LYKAQAIQRQLEEVEERQRASEIQGVRLEKALRGEADSGTQDEAQLLQEWFKLVLEKNKL 600
Query: 106 HDEEDEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRK 152
E E +++AQ+LE Q L+ KL ++ + + + D LN +
Sbjct: 601 MRYESEL-LIMAQELELEDHQSRLEQKLREKMLKEESQKDEKDLNEE 646
>gi|81295816 nasopharyngeal epithelium specific protein 1 [Homo
sapiens]
Length = 551
Score = 32.7 bits (73), Expect = 0.36
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 68 EEMASLLQQIEIERSLYSDHE------LRALDENQRLAKKKADLHDEEDEQDI-----LL 116
E S+ +Q E+ER + + +++NQ A+ ++E EQ + L
Sbjct: 235 ERQKSIQRQEELERKRREERIRGRRQIVEQMEKNQEERSLLAEQREQEKEQMLEYMEQLQ 294
Query: 117 AQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVW----- 171
+DL+DM ++ + K+ A I +++N + + LL +EK DQ V
Sbjct: 295 EEDLKDMERRQQQKLKMQAEIKRINDENQK--------QKAELLAQEKLADQMVMEFTKK 346
Query: 172 -ILPQAEWQ-PGETLRGTAERTLATL 195
+ +AE++ E +R E+ +A L
Sbjct: 347 KMAREAEFEAEQERIRREKEKEIARL 372
>gi|169208517 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 2 [Homo sapiens]
Length = 602
Score = 32.3 bits (72), Expect = 0.47
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 36 AAPSSNGSPWRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDH---ELRAL 92
++PS G+ W+L ++ + ++ LT L+E QQ+++ER YS+H E
Sbjct: 198 SSPSKAGTEWKLEQSM--REEALLKVQLTQLKESF----QQVQLERDEYSEHLKGERARW 251
Query: 93 DENQRLAKKKADLHDEEDEQDILLAQDLE 121
+ R ++ +E +QD+ + LE
Sbjct: 252 QQRMRKMSQEICTLKKEKQQDMRRVEKLE 280
>gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 632
Score = 32.3 bits (72), Expect = 0.47
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 36 AAPSSNGSPWRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDH---ELRAL 92
++PS G+ W+L ++ + ++ LT L+E QQ+++ER YS+H E
Sbjct: 199 SSPSKAGTEWKLEQSM--REEALLKVQLTQLKESF----QQVQLERDEYSEHLKGERARW 252
Query: 93 DENQRLAKKKADLHDEEDEQDILLAQDLE 121
+ R ++ +E +QD+ + LE
Sbjct: 253 QQRMRKMSQEICTLKKEKQQDMRRVEKLE 281
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 32.3 bits (72), Expect = 0.47
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
K + L+ + L ++E E+ ++ ++ L +++R K+ EED ++IL QDL
Sbjct: 1816 KQIQKLEARVRELEGEVESEQKRNAE-AVKGLRKHERRVKELT-YQTEEDRKNILRLQDL 1873
Query: 121 EDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNL 157
D + K +K A E ++ N + RKL L
Sbjct: 1874 VDKLQAKVKSYKRQAEEAE-EQSNTNLAKFRKLQHEL 1909
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 32.3 bits (72), Expect = 0.47
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
K + L+ + L ++E E+ ++ ++ L +++R K+ EED ++IL QDL
Sbjct: 1816 KQIQKLEARVRELEGEVESEQKRNAE-AVKGLRKHERRVKELT-YQTEEDRKNILRLQDL 1873
Query: 121 EDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNL 157
D + K +K A E ++ N + RKL L
Sbjct: 1874 VDKLQAKVKSYKRQAEEAE-EQSNTNLAKFRKLQHEL 1909
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 32.3 bits (72), Expect = 0.47
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
K + L+ + L ++E E+ ++ ++ L +++R K+ EED +++L QDL
Sbjct: 1813 KQIQKLEARVRELEGEVENEQKRNAE-AVKGLRKHERRVKELT-YQTEEDRKNVLRLQDL 1870
Query: 121 EDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNL 157
D + K +K A E ++ N S RKL L
Sbjct: 1871 VDKLQAKVKSYKRQAEEAE-EQSNANLSKFRKLQHEL 1906
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 32.0 bits (71), Expect = 0.62
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 31/175 (17%)
Query: 56 PPVVSKPLTPLQEEMASLLQQIE-IERSLYSD-------------HELRALDENQRLAKK 101
PP + LQ+E L +++E + R L ++ E R ++ +RL ++
Sbjct: 152 PPAGPSKVEQLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQ 211
Query: 102 KADLHDEED---EQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLV 158
+ LH++E+ EQ+ L + E + EQ+ KL + +E R+ +
Sbjct: 212 EERLHEQEERLCEQEERLCEQEERLCEQE----KLPGQERLLEEVEKLLEQERRQEEQER 267
Query: 159 LLVREKFGDQDVWILPQAE--------WQPGETLRGTAE-RTLATLSENNMEAKF 204
LL RE+ D+ +L Q WQ ETLR R L + E EA +
Sbjct: 268 LLERERLLDEVEELLEQERLRQQDERLWQQ-ETLRELERLRELERMLELGWEALY 321
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 32.0 bits (71), Expect = 0.62
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 67 QEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDE--QDILLAQDLEDMW 124
QEE ++I + E ++ +++ K++ ++ ++E++ Q L + E +W
Sbjct: 384 QEEKMQEEERIREREKKMREEEETMREQEEKMQKQEENMWEQEEKEWQQQRLPEQKEKLW 443
Query: 125 EQKFLQFKLGARITEADEK----NDRTSLNRKLDRNLVLLVR--------EKFGDQD--V 170
EQ+ +Q + +I E +EK + +K+ R + + EK DQ+ +
Sbjct: 444 EQEKMQ-EQEEKIWEQEEKIRDQEEMWGQEKKMWRQEKMREQEDQMWEQEEKMRDQEQKM 502
Query: 171 WILPQAEWQPGETLRGTAER 190
W + W+ E LR ER
Sbjct: 503 WDQEERMWEQDERLREKEER 522
Score = 28.5 bits (62), Expect = 6.8
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 66 LQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEED--EQDILLAQDLEDM 123
L+E+ + +Q E R E R ++ + L +++ +L +++ EQ+ + + E M
Sbjct: 264 LREQEGKMREQEEKMRR----QEKRLREQEKELREQEKELREQKKLREQEEQMQEQEEKM 319
Query: 124 WEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGET 183
WEQ+ ++ E +EK R + +K DQ+ + W+ E
Sbjct: 320 WEQE-------EKMREQEEKMWRQEERLWEQEKQMREQEQKMRDQE-----ERMWEQDER 367
Query: 184 LRGTAER 190
LR ER
Sbjct: 368 LREKEER 374
Score = 28.5 bits (62), Expect = 6.8
Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEED---------- 110
K + +E+M + E E+ + E + E +R+ +++ + +EE+
Sbjct: 527 KKMWQQEEKMREEKKTQEQEKKTWDQEE--KMREEERMREREKKMREEEEMMREQEEKMQ 584
Query: 111 EQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLL--VREKFGDQ 168
EQ+ + + E MWEQ+ + ++ E +EK K+ ++ EK +Q
Sbjct: 585 EQEEKMREQEEKMWEQEEKMQEQEEKMWEQEEKMWEQEEEDKMQEQEEMMWEQEEKMQEQ 644
Query: 169 DVWILPQAEWQPGETLRGTAER 190
+ + W+ E +R E+
Sbjct: 645 E-----EKMWEQEEKMREQEEK 661
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 32.0 bits (71), Expect = 0.62
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 67 QEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQ 126
QE+ A + +Q E R + E + ++ +++ +++ +H++E ++ Q+ E+MW Q
Sbjct: 473 QEQEAKMWRQEEKIR----EQEEKIREQEEKMWRQEEKIHEQEKIREEEKRQEQEEMWRQ 528
Query: 127 KFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAE--WQPGETL 184
+ + + I EK + + EK DQ+ I Q E W+ E +
Sbjct: 529 E-EKIREQEEIWRQKEKIHEQEEKIRKQEEKMWRQEEKMHDQEEKIREQEEKVWRQEEKI 587
Query: 185 RGTAER 190
R E+
Sbjct: 588 REQEEK 593
Score = 28.9 bits (63), Expect = 5.2
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 80 ERSLYSDHELRALDENQRLAKKKADLHDEE-DEQDILLAQDLEDMWEQKFLQFKLGARIT 138
E+ + ++R +E R +KK +E+ EQ+ ++ + E MWEQ+ + ++
Sbjct: 627 EKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQ 686
Query: 139 EADEKNDR 146
E +EK R
Sbjct: 687 EQEEKMRR 694
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 31.2 bits (69), Expect = 1.1
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
K L L+ + L ++E E+ ++ ++ + +++R K+ EED +++L QDL
Sbjct: 1810 KQLQKLEARVRELENELEAEQKRNAE-SVKGMRKSERRIKELT-YQTEEDRKNLLRLQDL 1867
Query: 121 EDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNL 157
D + K +K A E ++ N S RK+ L
Sbjct: 1868 VDKLQLKVKAYKRQAEEAE-EQANTNLSKFRKVQHEL 1903
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/75 (20%), Positives = 38/75 (50%)
Query: 49 GALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDE 108
G+ L RP + + + + Q +++ER +LR L + L +++ +L
Sbjct: 2345 GSGALSRPGFEKEEASQEERQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRH 2404
Query: 109 EDEQDILLAQDLEDM 123
+E+ +L+ ++L+++
Sbjct: 2405 REEEQLLVQRELQEL 2419
>gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens]
Length = 757
Score = 31.2 bits (69), Expect = 1.1
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
K L+ LQEE+ L +QI I + EL + ENQ+L K L +E+ ++ L+Q
Sbjct: 319 KALSSLQEELNKLREQIRILEDKGTSTEL--VKENQKL---KQHLEEEKQKKHSFLSQRE 373
Query: 121 EDMWEQKFLQFKL 133
+ E K L+ +L
Sbjct: 374 TLLTEAKMLKREL 386
>gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens]
Length = 757
Score = 31.2 bits (69), Expect = 1.1
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
K L+ LQEE+ L +QI I + EL + ENQ+L K L +E+ ++ L+Q
Sbjct: 319 KALSSLQEELNKLREQIRILEDKGTSTEL--VKENQKL---KQHLEEEKQKKHSFLSQRE 373
Query: 121 EDMWEQKFLQFKL 133
+ E K L+ +L
Sbjct: 374 TLLTEAKMLKREL 386
>gi|13128864 histone deacetylase 6 [Homo sapiens]
Length = 1215
Score = 30.8 bits (68), Expect = 1.4
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 34/207 (16%)
Query: 3 APVRRTLLGVAGGWRRFERLWAG--SLSSRSLALAAAPSSNGSPWRLLGALCLQRPPVVS 60
A + L+G+A G R + G +L+S S ++AA S LLG PP+++
Sbjct: 760 AHLTHLLMGLASG--RIILILEGGYNLTSISESMAACTRS------LLG----DPPPLLT 807
Query: 61 KPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDL 120
P PL +AS+ + I++ R + + +++ + + K LA+ +
Sbjct: 808 LPRPPLSGALASITETIQVHRRYWRSLRVMKVEDREGPSSSKLVTKKAPQPAKPRLAERM 867
Query: 121 EDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQP 180
E+K L+ +G ++T A + T + +V L ++ QP
Sbjct: 868 TTR-EKKVLEAGMG-KVTSASFGEESTPGQTNSETAVVALTQD---------------QP 910
Query: 181 GETLRGTAERTLA-TLSENNMEAKFLG 206
E G A TLA T+SE + LG
Sbjct: 911 SEAATGGA--TLAQTISEAAIGGAMLG 935
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,560,816
Number of Sequences: 37866
Number of extensions: 461161
Number of successful extensions: 2100
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 1967
Number of HSP's gapped (non-prelim): 187
length of query: 279
length of database: 18,247,518
effective HSP length: 101
effective length of query: 178
effective length of database: 14,423,052
effective search space: 2567303256
effective search space used: 2567303256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.