BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|26638666 mutS homolog 5 isoform c [Homo sapiens] (834 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4505253 mutS homolog 5 isoform c [Homo sapiens] 1648 0.0 gi|26638666 mutS homolog 5 isoform c [Homo sapiens] 1648 0.0 gi|26638664 mutS homolog 5 isoform b [Homo sapiens] 1643 0.0 gi|26638662 mutS homolog 5 isoform a [Homo sapiens] 1637 0.0 gi|68303635 mutS homolog 3 [Homo sapiens] 181 2e-45 gi|4557761 mutS homolog 2 [Homo sapiens] 150 6e-36 gi|36949366 mutS homolog 4 [Homo sapiens] 143 7e-34 gi|4504191 mutS homolog 6 [Homo sapiens] 142 1e-33 gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 36 0.13 gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 36 0.13 gi|112789532 poliovirus receptor related 2 isoform delta precurs... 33 0.84 gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 1.1 gi|21735548 centrosomal protein 2 [Homo sapiens] 33 1.1 gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 33 1.1 gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 32 1.9 gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ... 32 1.9 gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ... 32 1.9 gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 32 2.4 gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f... 32 2.4 gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 32 2.4 gi|110349786 Alstrom syndrome 1 [Homo sapiens] 32 3.2 gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... 32 3.2 gi|169173306 PREDICTED: hypothetical protein [Homo sapiens] 32 3.2 gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens] 32 3.2 gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 32 3.2 gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 32 3.2 gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 32 3.2 gi|7019333 nuclear receptor binding protein [Homo sapiens] 32 3.2 gi|4557415 cystathionine-beta-synthase [Homo sapiens] 31 5.4 gi|116517292 cut-like 2 [Homo sapiens] 31 5.4 >gi|4505253 mutS homolog 5 isoform c [Homo sapiens] Length = 834 Score = 1648 bits (4267), Expect = 0.0 Identities = 834/834 (100%), Positives = 834/834 (100%) Query: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY Sbjct: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60 Query: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ Sbjct: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120 Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180 Query: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240 Query: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL Sbjct: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300 Query: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF Sbjct: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360 Query: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV Sbjct: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420 Query: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS Sbjct: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480 Query: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR Sbjct: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540 Query: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI Sbjct: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600 Query: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN Sbjct: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660 Query: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ Sbjct: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720 Query: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS Sbjct: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780 Query: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL Sbjct: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834 >gi|26638666 mutS homolog 5 isoform c [Homo sapiens] Length = 834 Score = 1648 bits (4267), Expect = 0.0 Identities = 834/834 (100%), Positives = 834/834 (100%) Query: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY Sbjct: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60 Query: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ Sbjct: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120 Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180 Query: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240 Query: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL Sbjct: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300 Query: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF Sbjct: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360 Query: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV Sbjct: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420 Query: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS Sbjct: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480 Query: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR Sbjct: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540 Query: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI Sbjct: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600 Query: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN Sbjct: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660 Query: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ Sbjct: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720 Query: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS Sbjct: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780 Query: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL Sbjct: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834 >gi|26638664 mutS homolog 5 isoform b [Homo sapiens] Length = 835 Score = 1643 bits (4255), Expect = 0.0 Identities = 834/835 (99%), Positives = 834/835 (99%), Gaps = 1/835 (0%) Query: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY Sbjct: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60 Query: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ Sbjct: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120 Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180 Query: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240 Query: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL Sbjct: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300 Query: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF Sbjct: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360 Query: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV Sbjct: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420 Query: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS Sbjct: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480 Query: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR Sbjct: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540 Query: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI Sbjct: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600 Query: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLN-QVAKAV 659 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLN QVAKAV Sbjct: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAV 660 Query: 660 NNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLP 719 NNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLP Sbjct: 661 NNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLP 720 Query: 720 QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR 779 QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR Sbjct: 721 QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR 780 Query: 780 SGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834 SGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL Sbjct: 781 SGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 835 >gi|26638662 mutS homolog 5 isoform a [Homo sapiens] Length = 851 Score = 1637 bits (4239), Expect = 0.0 Identities = 834/851 (98%), Positives = 834/851 (98%), Gaps = 17/851 (1%) Query: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY Sbjct: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60 Query: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ Sbjct: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120 Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLT- 179 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLT Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTP 180 Query: 180 ----------------VRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNID 223 VRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNID Sbjct: 181 PGDLRFTPIPLLIPSQVRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNID 240 Query: 224 QDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGE 283 QDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGE Sbjct: 241 QDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGE 300 Query: 284 LSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA 343 LSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA Sbjct: 301 LSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA 360 Query: 344 LGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEI 403 LGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEI Sbjct: 361 LGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEI 420 Query: 404 DEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEI 463 DEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEI Sbjct: 421 DEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEI 480 Query: 464 NGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL 523 NGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL Sbjct: 481 NGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL 540 Query: 524 DLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGD 583 DLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGD Sbjct: 541 DLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGD 600 Query: 584 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISL 643 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISL Sbjct: 601 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISL 660 Query: 644 GLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 703 GLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI Sbjct: 661 GLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 720 Query: 704 FVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL 763 FVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL Sbjct: 721 FVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL 780 Query: 764 PDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMS 823 PDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMS Sbjct: 781 PDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMS 840 Query: 824 QEVLPAATSIL 834 QEVLPAATSIL Sbjct: 841 QEVLPAATSIL 851 >gi|68303635 mutS homolog 3 [Homo sapiens] Length = 1137 Score = 181 bits (459), Expect = 2e-45 Identities = 166/604 (27%), Positives = 291/604 (48%), Gaps = 65/604 (10%) Query: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGH 312 SL +L+ +G + L+ W T+P L E+++RLD + L ++ Q+ + H Sbjct: 559 SLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN----H 614 Query: 313 IKNVPLILKRM-KLSHTKVS--DWQVLYKTVYSALG----LRDACRSLPQSIQLFRDIAQ 365 ++ +P I + + + H K S ++ ++ KT+Y + A S QS L R + Sbjct: 615 LRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQS-DLLRTVIL 673 Query: 366 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNID--PEIDEKKRRLMGLPSFLTEVARK 423 E + L + + K+++ + + ++ + ++ P I ++K + G+ + R Sbjct: 674 EIPELLSPVEHYL-KILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGV----IDEIRM 728 Query: 424 ELENLDSRIPSCSVIYIPLIG--FLLSIPRLPSMVEASDF-------EINGLDFMFLSEE 474 L+ + + + S Y+ + G F++ I +D+ ++ F+ E Sbjct: 729 HLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVEN 788 Query: 475 KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLA 534 H R + + L C + L + L +A V LA+ +D + + Sbjct: 789 YRHLNQLREQLV------LDCSAEWLDFLEKFSEHYHSLCKA-----VHHLAT-VDCIFS 836 Query: 535 LASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCART---FVPNSTECGGDKGRVKVIT 591 LA A+ Y RP + + I+NGRHP++++ +VPN+T+ D RV +IT Sbjct: 837 LAKVAKQGDYCRPTVQEE-RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIIT 895 Query: 592 GPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMID 651 GPN GKS Y+KQV LIT MA +GS+VPAEEA IG VD IFTR+ + ++I G STFM + Sbjct: 896 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEE 955 Query: 652 LNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLS 711 L A+ + AT+QSLV++DE G+GT+T DG+A+ A L +++ R +FV T++ Sbjct: 956 LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFV-THYPP 1013 Query: 712 LVQLQLLPQGPLVQY-LTMETCEDGNDL------------VFFYQVCEGVAKASHASHTA 758 + +L+ + Y + ED + L F YQ+ G+A S+ + A Sbjct: 1014 VCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVA 1073 Query: 759 AQAGLPDKLVA----RGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP 814 A +P +++ + KE+ LI + + K +K K M N Q L + ++E+ Sbjct: 1074 KLADVPGEILKKAAHKSKELEGLINTKR--KRLKYFAKLWTMHNAQDLQKWTEEFNMEET 1131 Query: 815 NLDL 818 L Sbjct: 1132 QTSL 1135 >gi|4557761 mutS homolog 2 [Homo sapiens] Length = 934 Score = 150 bits (378), Expect = 6e-36 Identities = 132/536 (24%), Positives = 233/536 (43%), Gaps = 29/536 (5%) Query: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHR-LLG 311 SL +LN+C G++L+ W +P D + RL++++ F+ ++ ++ Q L LL Sbjct: 325 SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFV--EDAELRQTLQEDLLR 382 Query: 312 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQ-----LFRDIAQE 366 ++ + K+ + + D LY+ + + A Q +F + Sbjct: 383 RFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTD 442 Query: 367 FSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLP----SFLTEVAR 422 D +I +D + + + F V P+ DP + E + + L S L AR Sbjct: 443 LRSDFSKFQEMIETTLDMD-QVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAAR 501 Query: 423 KELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSAR 482 + +I S G+ + V ++ + +D + + + + +++ Sbjct: 502 DLGLDPGKQIKLDSSAQF---GYYFRVTCKEEKVLRNNKNFSTVD---IQKNGVKFTNSK 555 Query: 483 TKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALA--SAAR 540 L+ E + + ++ ++ + + D+ ++LD +++ A S Sbjct: 556 LTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGA 615 Query: 541 DYGYSRPRYSPQVLG-VRIQNGRHPLMELCAR-TFVPNSTECGGDKGRVKVITGPNSSGK 598 Y RP + G + ++ RH +E+ F+PN DK +ITGPN GK Sbjct: 616 PVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGK 675 Query: 599 SIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKA 658 S Y++Q G+I MA +G FVP E AE+ VD I R+ + +S G+STFM ++ + A Sbjct: 676 STYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASI 735 Query: 659 VNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLAR-GPTCPHIFVATNFLSLVQLQL 717 + +AT SL++IDE G+GT+T DG L A+ + + G C AT+F L L Sbjct: 736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC---MFATHFHELT--AL 790 Query: 718 LPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKE 773 Q P V L + L YQV +GV S H A A P ++ K+ Sbjct: 791 ANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQ 846 >gi|36949366 mutS homolog 4 [Homo sapiens] Length = 936 Score = 143 bits (360), Expect = 7e-34 Identities = 144/558 (25%), Positives = 260/558 (46%), Gaps = 55/558 (9%) Query: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL--DMAQMLHRLL 310 +LFG+LN G + LR P D+ ++ RLD +Q L + L + ++ R L Sbjct: 334 TLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFL 393 Query: 311 GHIKNVPLILKRMK-----LSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQ 365 + + ++++ K + +K+++ L T+ L+ A ++ + L R Sbjct: 394 DTEQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVDPLKIAMKNC--NTPLLRAYYG 451 Query: 366 EFSDD-----LHHIASLIGKVVDF-EGSL---AENRFTVLPNIDPEIDEKKRRLM----G 412 D L I ++I + +G L + + V NI+ +D +R Sbjct: 452 SLEDKRFGIILEKIKTVINDDARYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDD 511 Query: 413 LPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIP--RLPSMVEASDFEINGLDFMF 470 + ++++ K L + S +I + +++P +LPS +F+ Sbjct: 512 IAGMISQLGEKYSLPLRTSFSSARGFFIQMTTDCIALPSDQLPS------------EFIK 559 Query: 471 LSEEKLHYR--SARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASR 528 +S+ K Y SA +++ + EI +++ +L ++ L ++ D S Sbjct: 560 ISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSM 619 Query: 529 LDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRV 587 LD+LL+ A A Y RP ++ + I+ G HP++E + A + N+T + Sbjct: 620 LDMLLSFAHACTLSDYVRPEFTDTLA---IKQGWHPILEKISAEKPIANNTYVT-EGSNF 675 Query: 588 KVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLST 647 +ITGPN SGKS YLKQ+ L MA +GS+VPAE + IFTRI + + I ST Sbjct: 676 LIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSST 735 Query: 648 FMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVAT 707 FM ++ ++A ++NA +SL+LIDE G+GTNT +G+ + AV + L+ AT Sbjct: 736 FMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLS---LKAFTLFAT 792 Query: 708 NFLSLVQLQLLPQGPLVQYLTME------TCEDGNDLVFFYQVCEGVAKASHASHTAAQ- 760 +FL L + L P V+ + E T + +++ Y++ +G+ + + AA+ Sbjct: 793 HFLELCHIDAL--YPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEV 850 Query: 761 AGLPDKLVARGKEVSDLI 778 + LP +V KE++ I Sbjct: 851 SSLPPSIVLDAKEITTQI 868 >gi|4504191 mutS homolog 6 [Homo sapiens] Length = 1360 Score = 142 bits (359), Expect = 1e-33 Identities = 176/669 (26%), Positives = 294/669 (43%), Gaps = 106/669 (15%) Query: 178 LTVRALGGLLKFLGRRRIGVEL------EDY------NVSVPILGFKKFMLTHLVNIDQD 225 L + ALGG + +L + I EL E+Y VS G + +D Sbjct: 679 LALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAV 738 Query: 226 TYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELS 285 T + L+IF + ++ G EG +L ++ CH +G++LL+ W P + ++ Sbjct: 739 TLNNLEIFLNGTN--------GSTEG-TLLERVDTCHTPFGKRLLKQWLCAPLCNHYAIN 789 Query: 286 SRLDVIQ-FFLLPQNL-DMAQML------HRLLGHIKNVPLILKRMKLSHTKVSDWQVLY 337 RLD I+ ++P + ++ ++L RLL I NV LK ++ ++ Sbjct: 790 DRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYE--- 846 Query: 338 KTVYSALGLRDACRSLP------QSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAEN 391 +T YS + D +L + I + ++A F + ++ +V+ + E Sbjct: 847 ETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFK------SKILKQVISLQTKNPEG 900 Query: 392 RF----TVLPNIDPEIDEKKRRLMGL-----------PSFLTEVARKE------LENLDS 430 RF L D D +K R GL L ++ E LE + Sbjct: 901 RFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRN 960 Query: 431 RIPSCSVIY--IPLIGFLLSIPRLPSMVEASDFEINGLDFMF-LSEEKLHYRSARTKELD 487 RI +++Y I + L IP +F L + L K + TK ++ Sbjct: 961 RIGCRTIVYWGIGRNRYQLEIPE--------NFTTRNLPEEYELKSTKKGCKRYWTKTIE 1012 Query: 488 ALLGDL-HCEIRDQETL--LMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGY 544 L +L + E R +L M +L ++ + LDVLL LA+ +R G Sbjct: 1013 KKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSR--GG 1070 Query: 545 SRPRYSPQVL-------GVRIQNGRHPLME--LCARTFVPNSTECGGD-------KGRVK 588 P P +L + ++ RHP + F+PN G + K Sbjct: 1071 DGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCV 1130 Query: 589 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 648 ++TGPN GKS ++Q GL+ MA +G +VPAE + +D +FTR+ + + I G STF Sbjct: 1131 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1190 Query: 649 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATN 708 ++L++ A + +ATA SLVL+DE G+GT T DG A+ AV++ LA C +F +T+ Sbjct: 1191 FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE-LAETIKCRTLF-STH 1248 Query: 709 FLSLV----QLQLLPQGPLVQYLTMETCEDGND--LVFFYQVCEGVAKASHASHTAAQAG 762 + SLV Q + G + + E CED + + F Y+ +G S+ + A A Sbjct: 1249 YHSLVEDYSQNVAVRLGHMACMVENE-CEDPSQETITFLYKFIKGACPKSYGFNAARLAN 1307 Query: 763 LPDKLVARG 771 LP++++ +G Sbjct: 1308 LPEEVIQKG 1316 >gi|166795264 AE binding protein 2 isoform b [Homo sapiens] Length = 517 Score = 36.2 bits (82), Expect = 0.13 Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Query: 1 MASLGANPRRTPQGP-RPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSG 59 MA L R +P P PG+A+ G P P E EEEE EEEE AE +L N G Sbjct: 8 MADLEELSRLSPLPPGSPGSAARGRAEP-----PEEEEEEEEEEEEAEAEAVAALLLNGG 62 >gi|166795262 AE binding protein 2 isoform a [Homo sapiens] Length = 503 Score = 36.2 bits (82), Expect = 0.13 Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Query: 1 MASLGANPRRTPQGP-RPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSG 59 MA L R +P P PG+A+ G P P E EEEE EEEE AE +L N G Sbjct: 8 MADLEELSRLSPLPPGSPGSAARGRAEP-----PEEEEEEEEEEEEAEAEAVAALLLNGG 62 >gi|112789532 poliovirus receptor related 2 isoform delta precursor [Homo sapiens] Length = 538 Score = 33.5 bits (75), Expect = 0.84 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 14/66 (21%) Query: 14 GP-RPGAASSGFPSPAPVPGP-------REAEEEEVEEEEELAEIHLCVLWNSGYLGIAY 65 GP PGA S G P P P PGP + E+EE EEEEE + N Y ++Y Sbjct: 465 GPLHPGATSLGSPIPVP-PGPPAVEDVSLDLEDEEGEEEEEYLD-----KINPIYDALSY 518 Query: 66 YDTSDS 71 SDS Sbjct: 519 SSPSDS 524 >gi|156071470 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 [Homo sapiens] Length = 889 Score = 33.1 bits (74), Expect = 1.1 Identities = 15/24 (62%), Positives = 15/24 (62%) Query: 9 RRTPQGPRPGAASSGFPSPAPVPG 32 RR P GP P AAS G P PA PG Sbjct: 759 RRPPPGPAPAAASPGPPPPASPPG 782 >gi|21735548 centrosomal protein 2 [Homo sapiens] Length = 2442 Score = 33.1 bits (74), Expect = 1.1 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 473 EEKLHYRSARTKELDALLGDLHCEIRDQE-TLLMYQLQCQVLARA-AVLTRVL 523 EE+L R + L+ +LGDL E R+QE LL Q QC A+ V TR L Sbjct: 1872 EEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQEHEVETRAL 1924 >gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] Length = 1489 Score = 33.1 bits (74), Expect = 1.1 Identities = 16/42 (38%), Positives = 21/42 (50%) Query: 5 GANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEE 46 G PRR P A+ G A PGP E + E+ +E+EE Sbjct: 1274 GPGPRRPPWEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEE 1315 Score = 31.6 bits (70), Expect = 3.2 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Query: 8 PRRTPQGPRPGAASSG-FPSPAPVPGPRE 35 PR P+ P PGA P P P+PGPRE Sbjct: 850 PRAPPEPPDPGAPRPPPDPGPLPLPGPRE 878 >gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] Length = 1312 Score = 32.3 bits (72), Expect = 1.9 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 12 PQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGYLGIAYYDTSDS 71 P G P ++S+G PSP E EEEE E+EEE + + S L Y D S S Sbjct: 253 PTGSNP-SSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAGIYDDNSLS 311 Query: 72 TIHFMPDAPDHES 84 D P ES Sbjct: 312 -----QDFPGDES 319 >gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo sapiens] Length = 788 Score = 32.3 bits (72), Expect = 1.9 Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 579 ECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDA 630 + GGD+ KV+T N +GK++ + VG A V E AE AV+A Sbjct: 308 DVGGDEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPEVTTEAAEASAVEA 359 >gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo sapiens] Length = 790 Score = 32.3 bits (72), Expect = 1.9 Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 579 ECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDA 630 + GGD+ KV+T N +GK++ + VG A V E AE AV+A Sbjct: 310 DVGGDEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPEVTTEAAEASAVEA 361 >gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] Length = 725 Score = 32.0 bits (71), Expect = 2.4 Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 2 ASLGANPRRTPQGPRPGAASSGFPSPAPVPGP 33 A+ G+ P + G P +A+SG SPAP GP Sbjct: 78 AAAGSAPSQAGPGSAPSSAASGASSPAPASGP 109 >gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f [Homo sapiens] Length = 194 Score = 32.0 bits (71), Expect = 2.4 Identities = 14/37 (37%), Positives = 23/37 (62%) Query: 16 RPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHL 52 +P AA++ P+PAP P P A + EE+ +L+ I + Sbjct: 9 KPVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKI 45 >gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] Length = 935 Score = 32.0 bits (71), Expect = 2.4 Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 2 ASLGANPRRTPQGPRPGAASSGFPSPAPVPGP 33 A+ G+ P + G P +A+SG SPAP GP Sbjct: 78 AAAGSAPSQAGPGSAPSSAASGASSPAPASGP 109 >gi|110349786 Alstrom syndrome 1 [Homo sapiens] Length = 4169 Score = 31.6 bits (70), Expect = 3.2 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 25 PSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES 84 P P PG E EEEE EEEEE E + + + + D+ H Sbjct: 3 PEDLPWPGELEEEEEEEEEEEEEEEEEAAAAAAANVDDVVVVEEVEEEAGRELDSDSHYG 62 Query: 85 LKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQEHREPKRPEIIFLPSVDFGLEISK 144 + L+ + DE + ++ A + R L L+ +HR + V + + Sbjct: 63 PQHLESIDDEEDEEA---KAWLQAHPGRILPPLSPPQHRYSEGERTSLEKIVPLTCHVWQ 119 Query: 145 QRLLSGN 151 Q + GN Sbjct: 120 QIVYQGN 126 >gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens] Length = 471 Score = 31.6 bits (70), Expect = 3.2 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Query: 8 PRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEE 46 PR P+GPR GAA+ P PRE EEEE E+E + Sbjct: 75 PRGPPEGPR-GAAAPEEEDEEP-GDPREGEEEEEEDEPD 111 >gi|169173306 PREDICTED: hypothetical protein [Homo sapiens] Length = 281 Score = 31.6 bits (70), Expect = 3.2 Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 2 ASLGANPRRTPQGPRPGAASSGFPS 26 A G +PRR+P PRPG + GFP+ Sbjct: 23 AKPGVSPRRSPALPRPGFPAPGFPA 47 >gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens] Length = 471 Score = 31.6 bits (70), Expect = 3.2 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Query: 8 PRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEE 46 PR P+GPR GAA+ P PRE EEEE E+E + Sbjct: 75 PRGPPEGPR-GAAAPEEEDEEP-GDPREGEEEEEEDEPD 111 >gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] Length = 170 Score = 31.6 bits (70), Expect = 3.2 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 2 ASLGANPRRTPQGPRPGAASSGFPSP----APVPGPREAEEEEVEEEEELAEI 50 A+ P R P P P A ++G P+P AP P A EE E L E+ Sbjct: 31 AAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGEL 83 >gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] Length = 177 Score = 31.6 bits (70), Expect = 3.2 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 2 ASLGANPRRTPQGPRPGAASSGFPSP----APVPGPREAEEEEVEEEEELAEI 50 A+ P R P P P A ++G P+P AP P A EE E L E+ Sbjct: 31 AAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGEL 83 >gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] Length = 204 Score = 31.6 bits (70), Expect = 3.2 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Query: 2 ASLGANPRRTPQGPRPGAASSGFPSP----APVPGPREAEEEEVEEEEELAEI 50 A+ P R P P P A ++G P+P AP P A EE E L E+ Sbjct: 31 AAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGEL 83 >gi|7019333 nuclear receptor binding protein [Homo sapiens] Length = 535 Score = 31.6 bits (70), Expect = 3.2 Identities = 17/54 (31%), Positives = 23/54 (42%) Query: 3 SLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLW 56 S G++P+ PG S P + EEEE E+E E+ E C W Sbjct: 11 SSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESPCGRW 64 >gi|4557415 cystathionine-beta-synthase [Homo sapiens] Length = 551 Score = 30.8 bits (68), Expect = 5.4 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 411 MGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMF 470 +G +T +ARK L + P C +I + G +L+ P + E + +E+ G+ + F Sbjct: 255 VGTGGTITGIARK----LKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDF 310 Query: 471 L 471 + Sbjct: 311 I 311 >gi|116517292 cut-like 2 [Homo sapiens] Length = 1486 Score = 30.8 bits (68), Expect = 5.4 Identities = 19/49 (38%), Positives = 21/49 (42%) Query: 2 ASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEI 50 A GA P P P PG G P PA G A EE+ + AEI Sbjct: 510 AFYGAKPPTAPATPAPGPEPLGGPEPADGGGGGAAGPGAEEEQLDTAEI 558 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,008,821 Number of Sequences: 37866 Number of extensions: 1440458 Number of successful extensions: 9684 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 9408 Number of HSP's gapped (non-prelim): 220 length of query: 834 length of database: 18,247,518 effective HSP length: 111 effective length of query: 723 effective length of database: 14,044,392 effective search space: 10154095416 effective search space used: 10154095416 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.