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Search of human proteins with 25777716
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens]
(354 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens] 735 0.0
gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens] 674 0.0
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 89 5e-18
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 89 5e-18
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 73 4e-13
gi|31542779 tripartite motif family-like 1 [Homo sapiens] 73 4e-13
gi|149193331 tripartite motif protein 15 [Homo sapiens] 71 1e-12
gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens] 70 2e-12
gi|112421127 tripartite motif-containing 58 [Homo sapiens] 70 2e-12
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 69 5e-12
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 69 5e-12
gi|31881693 butyrophilin, subfamily 2, member A2 isoform b [Homo... 69 8e-12
gi|6453813 butyrophilin, subfamily 2, member A2 isoform a [Homo ... 69 8e-12
gi|15208660 tripartite motif protein 21 [Homo sapiens] 68 1e-11
gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens] 68 1e-11
gi|217035095 tripartite motif-containing 62 [Homo sapiens] 68 1e-11
gi|5921461 butyrophilin, subfamily 2, member A1 isoform 1 precur... 68 1e-11
gi|5730009 ret finger protein [Homo sapiens] 67 2e-11
gi|56605981 tripartite motif-containing 72 [Homo sapiens] 67 2e-11
gi|222418658 butyrophilin, subfamily 3, member A1 isoform c [Hom... 66 4e-11
gi|37595558 butyrophilin, subfamily 3, member A1 isoform a [Homo... 66 4e-11
gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens] 64 2e-10
gi|157743261 tripartite motif-containing 75 [Homo sapiens] 64 2e-10
gi|22749269 ring finger protein 129 [Homo sapiens] 63 3e-10
gi|37622899 ring finger protein 137 [Homo sapiens] 63 3e-10
gi|63054855 erythroblast membrane-associated protein precursor [... 63 5e-10
gi|19923536 erythroblast membrane-associated protein precursor [... 63 5e-10
gi|5901908 butyrophilin, subfamily 3, member A3 isoform a [Homo ... 62 8e-10
gi|37574628 butyrophilin, subfamily 3, member A3 isoform b [Homo... 62 8e-10
gi|44680130 tripartite motif-containing 7 isoform 2 [Homo sapiens] 61 1e-09
>gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens]
Length = 354
Score = 735 bits (1898), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG 60
MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG
Sbjct: 1 MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG 60
Query: 61 AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP 120
AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP
Sbjct: 61 AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP 120
Query: 121 ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT 180
ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT
Sbjct: 121 ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT 180
Query: 181 MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR 240
MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR
Sbjct: 181 MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR 240
Query: 241 LLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAASCRDSS 300
LLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAASCRDSS
Sbjct: 241 LLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAASCRDSS 300
Query: 301 GEDADDEESHYAVGAAGESVQRKGCAPGPLGERIFPLFCTCDPRAPLRIVPAES 354
GEDADDEESHYAVGAAGESVQRKGCAPGPLGERIFPLFCTCDPRAPLRIVPAES
Sbjct: 301 GEDADDEESHYAVGAAGESVQRKGCAPGPLGERIFPLFCTCDPRAPLRIVPAES 354
>gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens]
Length = 420
Score = 674 bits (1738), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG 60
MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG
Sbjct: 1 MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG 60
Query: 61 AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP 120
AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP
Sbjct: 61 AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP 120
Query: 121 ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT 180
ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT
Sbjct: 121 ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT 180
Query: 181 MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR 240
MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR
Sbjct: 181 MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR 240
Query: 241 LLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAASCRDSS 300
LLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAASCRDSS
Sbjct: 241 LLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAASCRDSS 300
Query: 301 GEDADDEESHYAVGAAGESVQRKGC 325
GEDADDEESHYAVGAAGESVQRKGC
Sbjct: 301 GEDADDEESHYAVGAAGESVQRKGC 325
Score = 66.2 bits (160), Expect = 4e-11
Identities = 29/29 (100%), Positives = 29/29 (100%)
Query: 326 APGPLGERIFPLFCTCDPRAPLRIVPAES 354
APGPLGERIFPLFCTCDPRAPLRIVPAES
Sbjct: 392 APGPLGERIFPLFCTCDPRAPLRIVPAES 420
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 89.4 bits (220), Expect = 5e-18
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 15/114 (13%)
Query: 211 DLPEDYPVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQL 270
+ P Y ++K+L +L AD+TLDP TAH L++S DR+SV+ PD P+RF
Sbjct: 290 NFPRQYFALRKILKQLIADVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPRRFTFY 349
Query: 271 PAVLGAQGFGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
P VL +GF +GRH WEVE D ++H+AVG +SV RKG
Sbjct: 350 PCVLATEGFTSGRHYWEVEVGD---------------KTHWAVGVCRDSVSRKG 388
Score = 52.4 bits (124), Expect = 6e-07
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 79 VERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLPC 138
+E L+ A+C +C ++PV++ C H+FC+AC+ R W CP C
Sbjct: 20 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW------EDLERDFPCPVCRKTS 73
Query: 139 PRRSLRSNVRLAVEVRISRELR 160
RSLR N +L V I+++L+
Sbjct: 74 RYRSLRPNRQLGSMVEIAKQLQ 95
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 89.4 bits (220), Expect = 5e-18
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 15/114 (13%)
Query: 211 DLPEDYPVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQL 270
+ P Y ++K+L +L AD+TLDP TAH L++S DR+SV+ PD P+RF
Sbjct: 320 NFPRQYFALRKILKQLIADVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPRRFTFY 379
Query: 271 PAVLGAQGFGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
P VL +GF +GRH WEVE D ++H+AVG +SV RKG
Sbjct: 380 PCVLATEGFTSGRHYWEVEVGD---------------KTHWAVGVCRDSVSRKG 418
Score = 52.4 bits (124), Expect = 6e-07
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 79 VERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLPC 138
+E L+ A+C +C ++PV++ C H+FC+AC+ R W CP C
Sbjct: 20 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW------EDLERDFPCPVCRKTS 73
Query: 139 PRRSLRSNVRLAVEVRISRELR 160
RSLR N +L V I+++L+
Sbjct: 74 RYRSLRPNRQLGSMVEIAKQLQ 95
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 72.8 bits (177), Expect = 4e-13
Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 16/107 (14%)
Query: 217 PVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGA 276
P + + L R D+TLDP TA+ L++S DRRSVQ A PD P+RF+ P VLG
Sbjct: 276 PGLVETLRRFRGDVTLDPDTANPELILSEDRRSVQRGDL-RQALPDSPERFDPGPCVLGQ 334
Query: 277 QGFGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRK 323
+ F +GRH WEVE D S +A+G E+V RK
Sbjct: 335 ERFTSGRHYWEVEVGDRTS---------------WALGVCRENVNRK 366
Score = 68.2 bits (165), Expect = 1e-11
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 76 PGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCG 135
P L L++ ATC +C F DPV+ C H+FCR C+ R WG P P ACP C
Sbjct: 4 PDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQP------EGPYACPECR 57
Query: 136 LPCPRRSLRSNVRLAVEVRISREL 159
P+R+LR N LA ++R L
Sbjct: 58 ELSPQRNLRPNRPLAKMAEMARRL 81
>gi|31542779 tripartite motif family-like 1 [Homo sapiens]
Length = 468
Score = 72.8 bits (177), Expect = 4e-13
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 16/114 (14%)
Query: 219 VKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQG 278
+K+ML + + ++TLDP TA+ L++S D +SV+ P D P+RF+Q VLG Q
Sbjct: 277 MKEMLRKFSTEITLDPATANAYLVLSEDLKSVKYGGSRQQLP-DNPERFDQSATVLGTQI 335
Query: 279 FGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKGCAPGPLGE 332
F +GRH WEVE + ++ + VG +SV RKG P P G+
Sbjct: 336 FTSGRHYWEVEVGN---------------KTEWEVGICKDSVSRKGNLPKPPGD 374
Score = 57.4 bits (137), Expect = 2e-08
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 78 LVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLP 137
L+E L + TC +C F PV C HSFC CL R W +P +CP C
Sbjct: 6 LMENLREELTCFICLDYFSSPVTTECGHSFCLVCLLRSW------EEHNTPLSCPECWRT 59
Query: 138 CPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT 180
+SN RL I+R+LR ++ + G GR+PT
Sbjct: 60 LEGPHFQSNERLGRLASIARQLRSQVLQSEDEQGSY--GRMPT 100
>gi|149193331 tripartite motif protein 15 [Homo sapiens]
Length = 465
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/110 (40%), Positives = 58/110 (52%), Gaps = 21/110 (19%)
Query: 220 KKMLHRLTAD---LTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGA 276
+ + H L D +TLDP TA R L++S DR+SV+ + PD P RF+ LPAVLG
Sbjct: 283 ENLAHHLEIDSGVITLDPQTASRSLVLSEDRKSVRYTRQ-KKSLPDSPLRFDGLPAVLGF 341
Query: 277 QGFGAGRHCWEV--ETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
GF +GRH W+V + D C VG AGE V+RKG
Sbjct: 342 PGFSSGRHRWQVDLQLGDGGGC---------------TVGVAGEGVRRKG 376
Score = 40.8 bits (94), Expect = 0.002
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 82 LEQLATCPLCGGSFEDPVLLACEHSFCRACL 112
+ +L C LC G ED V + C H+FCR CL
Sbjct: 10 VHELPACTLCAGPLEDAVTIPCGHTFCRLCL 40
>gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens]
Length = 630
Score = 70.5 bits (171), Expect = 2e-12
Identities = 55/149 (36%), Positives = 70/149 (46%), Gaps = 32/149 (21%)
Query: 189 EDMRKTWRRFEV----------PTSKSSNSEDDLPEDYPVVKKMLHRLT----ADLTLDP 234
+D+++T+ R E P +S D L + +V+KM DLTLDP
Sbjct: 380 QDIKETFNRCEEVQLQPPEVWSPDPCQPHSHDFLTD--AIVRKMSRMFCQAARVDLTLDP 437
Query: 235 GTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAA 294
TAH L++S DRR V+LA D PKRF+ VLGAQGF +GRH WEVE
Sbjct: 438 DTAHPALMLSPDRRGVRLAERRQEVA-DHPKRFSADCCVLGAQGFRSGRHYWEVEVGGRR 496
Query: 295 SCRDSSGEDADDEESHYAVGAAGESVQRK 323
+AVGAA ES K
Sbjct: 497 G---------------WAVGAARESTHHK 510
Score = 50.1 bits (118), Expect = 3e-06
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 69 MDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWG 117
M A + P V+ L++ A C +C F DPV + C H+FCR C+ + WG
Sbjct: 1 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWG 49
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 131 CPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPTMG 182
CP C PRRS R N++LA V++ R++ PG RG R+ G
Sbjct: 183 CPQCRKSFPRRSFRPNLQLANMVQVIRQMH---PTPG------RGSRVTDQG 225
>gi|112421127 tripartite motif-containing 58 [Homo sapiens]
Length = 486
Score = 70.5 bits (171), Expect = 2e-12
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 28/171 (16%)
Query: 140 RRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPTMGCLDLPGEDMRKTWRRFE 199
+R S RL + + +EL ++L E R P +G L E +R R +
Sbjct: 213 QRLRESKSRLVQQSKALKELADELQERCQR---------PALGLL----EGVRGVLSRSK 259
Query: 200 VPTSKSSNSEDDLPEDY------PVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLA 253
T + +++P + P +++L + D+ LDP TAH LL++AD RSVQ
Sbjct: 260 AVTRLEA---ENIPMELKTACCIPGRRELLRKFQVDVKLDPATAHPSLLLTADLRSVQDG 316
Query: 254 PPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAAS-----CRDS 299
P P + P+RF+ P +LG Q F +GRH WEV + A C+D+
Sbjct: 317 EPWRDVP-NNPERFDTWPCILGLQSFSSGRHYWEVLVGEGAEWGLGVCQDT 366
Score = 52.4 bits (124), Expect = 6e-07
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 80 ERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLPCP 139
ERL + A CP+C ++PV + C HSFC C++ + G + ACP C P
Sbjct: 8 ERLREDARCPVCLDFLQEPVSVDCGHSFCLRCISE--FCEKSDGAQGGVYACPQCRGPFR 65
Query: 140 RRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRG 175
R N +LA V R L A PGAR R G
Sbjct: 66 PSGFRPNRQLAGLVESVRRLGLG-AGPGARRCARHG 100
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 69.3 bits (168), Expect = 5e-12
Identities = 42/125 (33%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 72 PELGPG-------LVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGT 124
P GPG L L+ ATC +C F +PV + C HSFCRAC+ R W P A
Sbjct: 6 PRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSV 65
Query: 125 EAS------PTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRI 178
A+ P CP C P LR N +LA + R A PG + R
Sbjct: 66 GAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARA 125
Query: 179 PTMGC 183
C
Sbjct: 126 AAARC 130
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 16/109 (14%)
Query: 229 DLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEV 288
+LTLDP TA+ RL++S D + V+L P + P RF+ VL + GF +GRH WEV
Sbjct: 343 ELTLDPDTANPRLILSLDLKGVRLGERAQDLP-NHPCRFDTNTRVLASCGFSSGRHHWEV 401
Query: 289 ETADAASCRDSSGEDADDEESHYAVGAAGESVQRKGCAPGPLGERIFPL 337
E + +A G A ESV+RKG P E ++ L
Sbjct: 402 EVG---------------SKDGWAFGVARESVRRKGLTPFTPEEGVWAL 435
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
Length = 221
Score = 69.3 bits (168), Expect = 5e-12
Identities = 42/125 (33%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 72 PELGPG-------LVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGT 124
P GPG L L+ ATC +C F +PV + C HSFCRAC+ R W P A
Sbjct: 6 PRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSV 65
Query: 125 EAS------PTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRI 178
A+ P CP C P LR N +LA + R A PG + R
Sbjct: 66 GAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARA 125
Query: 179 PTMGC 183
C
Sbjct: 126 AAARC 130
>gi|31881693 butyrophilin, subfamily 2, member A2 isoform b [Homo
sapiens]
Length = 407
Score = 68.6 bits (166), Expect = 8e-12
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 212 LPEDYPVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLP 271
L E+ + LH AD+ LDP TAH L +S DRRSV+ P P D P+RF+ P
Sbjct: 197 LQEELRWRRTFLH--AADVVLDPDTAHPELFLSEDRRSVRRGPYRQRVP-DNPERFDSQP 253
Query: 272 AVLGAQGFGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
VLG + F +G+H WEVE + + VG SV+RKG
Sbjct: 254 CVLGWESFASGKHYWEVEVENVMV---------------WTVGVCRHSVERKG 291
>gi|6453813 butyrophilin, subfamily 2, member A2 isoform a [Homo
sapiens]
Length = 523
Score = 68.6 bits (166), Expect = 8e-12
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 212 LPEDYPVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLP 271
L E+ + LH AD+ LDP TAH L +S DRRSV+ P P D P+RF+ P
Sbjct: 313 LQEELRWRRTFLH--AADVVLDPDTAHPELFLSEDRRSVRRGPYRQRVP-DNPERFDSQP 369
Query: 272 AVLGAQGFGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
VLG + F +G+H WEVE + + VG SV+RKG
Sbjct: 370 CVLGWESFASGKHYWEVEVENVMV---------------WTVGVCRHSVERKG 407
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 68.2 bits (165), Expect = 1e-11
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 16/108 (14%)
Query: 217 PVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGA 276
P +KKML +TLDP TA+ L++S DRR V+L + P +RF+ P VLGA
Sbjct: 276 PGLKKMLRTCAVHITLDPDTANPWLILSEDRRQVRLGDT-QQSIPGNEERFDSYPMVLGA 334
Query: 277 QGFGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
Q F +G+H WEV D +G++A D +G +SV+RKG
Sbjct: 335 QHFHSGKHYWEV---------DVTGKEAWD------LGVCRDSVRRKG 367
Score = 45.8 bits (107), Expect = 6e-05
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 87 TCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLPCPRRSLRSN 146
TCP+C F +PV + C HSFC+ C+++ + + CP C ++LR N
Sbjct: 15 TCPICLDPFVEPVSIECGHSFCQECISQ--------VGKGGGSVCPVCRQRFLLKNLRPN 66
Query: 147 VRLAVEVRISRELREKLAE 165
+LA V +E+ ++ E
Sbjct: 67 RQLANMVNNLKEISQEARE 85
>gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens]
Length = 526
Score = 68.2 bits (165), Expect = 1e-11
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 21/137 (15%)
Query: 194 TWRRF-EVPTSKSS--NSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRRLLISADRRSV 250
TWR + E P + + +S++ L E+ K LH + D+TLDP TAH L + D +SV
Sbjct: 268 TWRLYNERPRERRNEFSSKERLLEELKWKKATLHAV--DVTLDPDTAHPHLFLYEDSKSV 325
Query: 251 QLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAASCRDSSGEDADDEESH 310
+L P + +RF+ P VLG + F +GRH WEVE D +
Sbjct: 326 RLEDSRQKLP-EKTERFDSWPCVLGRETFTSGRHYWEVEVGD---------------RTD 369
Query: 311 YAVGAAGESVQRKGCAP 327
+A+G E+V +KG P
Sbjct: 370 WAIGVCRENVMKKGFDP 386
>gi|217035095 tripartite motif-containing 62 [Homo sapiens]
Length = 475
Score = 68.2 bits (165), Expect = 1e-11
Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 23/129 (17%)
Query: 199 EVPTSKSSNSEDDLPEDYPVVKKM---LHRLTADLTLDPGTAHRRLLISADRRSVQLAPP 255
+ PTSK + P Y + K + +H + A LTLDPGTAH+RL++S D V
Sbjct: 268 DFPTSKYTG-----PLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNL 322
Query: 256 GTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGA 315
D PKRF+ +VLG++ F +G H WEV A E++ + +G
Sbjct: 323 HPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVA---------------EKTQWVIGL 367
Query: 316 AGESVQRKG 324
A E+ RKG
Sbjct: 368 AHEAASRKG 376
Score = 47.0 bits (110), Expect = 3e-05
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 88 CPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLPCPRRSLRSNV 147
C +C ++DPV L CEH FCR C+ W A G CP C +L ++
Sbjct: 11 CSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGAR----DCPECRRTFAEPALAPSL 66
Query: 148 RLA 150
+LA
Sbjct: 67 KLA 69
>gi|5921461 butyrophilin, subfamily 2, member A1 isoform 1 precursor
[Homo sapiens]
Length = 527
Score = 68.2 bits (165), Expect = 1e-11
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 19/118 (16%)
Query: 209 EDDLPEDYPVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGT--PAPPDGPKR 266
++ L E+ + LH + D+ LDP TAH L +S DRRSV+ P + PD P+R
Sbjct: 311 KEKLQEELRWRRTFLHAV--DVVLDPDTAHPDLFLSEDRRSVRRCPFRHLGESVPDNPER 368
Query: 267 FNQLPAVLGAQGFGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
F+ P VLG + F +G+H WEVE + + VG +SV+RKG
Sbjct: 369 FDSQPCVLGRESFASGKHYWEVEVENVI---------------EWTVGVCRDSVERKG 411
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 67.4 bits (163), Expect = 2e-11
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 78 LVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLP 137
+ E L+Q TCP+C F +P++L C H+ C ACLAR WGT +CP C
Sbjct: 6 VAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETN------VSCPQCRET 59
Query: 138 CPRRSLRSNVRLAVEVRISRELR-EKLAEPGARAG 171
P+R +R N LA ++ ++LR E+ + PG G
Sbjct: 60 FPQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMG 94
Score = 62.4 bits (150), Expect = 6e-10
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 227 TADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCW 286
+ D+TLDP TA+ L++S + R V+ + P D P+RFN P VLG+ F AGRH W
Sbjct: 315 SVDVTLDPDTAYPSLILSDNLRQVRYSYLQQDLP-DNPERFNLFPCVLGSPCFIAGRHYW 373
Query: 287 EVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
EVE D A + +G +SV RKG
Sbjct: 374 EVEVGDKAK---------------WTIGVCEDSVCRKG 396
>gi|56605981 tripartite motif-containing 72 [Homo sapiens]
Length = 477
Score = 67.4 bits (163), Expect = 2e-11
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 76 PGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCG 135
PGL L Q +CPLC F+ PV C HSFCRACL R G P A GT CPCC
Sbjct: 5 PGL---LHQELSCPLCLQLFDAPVTAECGHSFCRACLGRVAGEPAADGT----VLCPCCQ 57
Query: 136 LPCPRRSLRSNVRLA 150
P ++L +N++LA
Sbjct: 58 APTRPQALSTNLQLA 72
Score = 51.2 bits (121), Expect = 1e-06
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 216 YPVVKKMLHRLTA---DLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPA 272
+ V +KM L +LT DP +AH L++S+ R V+ + P + P++F++ A
Sbjct: 274 FQVWRKMFRALMPALEELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVA 333
Query: 273 VLGAQGFGAGRHCWEVETAD 292
V+ Q G H WEV+ D
Sbjct: 334 VVAHQQLSEGEHYWEVDVGD 353
>gi|222418658 butyrophilin, subfamily 3, member A1 isoform c [Homo
sapiens]
Length = 461
Score = 66.2 bits (160), Expect = 4e-11
Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 17/105 (16%)
Query: 220 KKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGF 279
KK L + AD+ LDP TA+ LL+S D+RSVQ A P D P+RFN VLG + F
Sbjct: 281 KKALFK-PADVILDPKTANPILLVSEDQRSVQRAKEPQDLP-DNPERFNWHYCVLGCESF 338
Query: 280 GAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
+GRH WEVE D + +G ++VQRKG
Sbjct: 339 ISGRHYWEVEVGD---------------RKEWHIGVCSKNVQRKG 368
>gi|37595558 butyrophilin, subfamily 3, member A1 isoform a [Homo
sapiens]
Length = 513
Score = 66.2 bits (160), Expect = 4e-11
Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 17/105 (16%)
Query: 220 KKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGF 279
KK L + AD+ LDP TA+ LL+S D+RSVQ A P D P+RFN VLG + F
Sbjct: 333 KKALFK-PADVILDPKTANPILLVSEDQRSVQRAKEPQDLP-DNPERFNWHYCVLGCESF 390
Query: 280 GAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
+GRH WEVE D + +G ++VQRKG
Sbjct: 391 ISGRHYWEVEVGD---------------RKEWHIGVCSKNVQRKG 420
>gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens]
Length = 518
Score = 64.3 bits (155), Expect = 2e-10
Identities = 45/113 (39%), Positives = 59/113 (52%), Gaps = 17/113 (15%)
Query: 189 EDMRKTWRRFEV----------PTSKSSNSEDDLPEDYPVVKKMLHRLT----ADLTLDP 234
+D+++T+ R E P +S D L + +V+KM DLTLDP
Sbjct: 380 QDIKETFNRCEEVQLQPPEVWSPDPCQPHSHDFLTD--AIVRKMSRMFCQAARVDLTLDP 437
Query: 235 GTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWE 287
TAH L++S DRR V+LA D PKRF+ VLGAQGF +GRH WE
Sbjct: 438 DTAHPALMLSPDRRGVRLAERRQEVA-DHPKRFSADCCVLGAQGFRSGRHYWE 489
Score = 50.1 bits (118), Expect = 3e-06
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 69 MDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWG 117
M A + P V+ L++ A C +C F DPV + C H+FCR C+ + WG
Sbjct: 1 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWG 49
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 131 CPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPTMG 182
CP C PRRS R N++LA V++ R++ PG RG R+ G
Sbjct: 183 CPQCRKSFPRRSFRPNLQLANMVQVIRQMH---PTPG------RGSRVTDQG 225
>gi|157743261 tripartite motif-containing 75 [Homo sapiens]
Length = 468
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 213 PEDYPVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPA 272
P Y +++++ + ++ LDP TAH L++S D++ V+ P PKRF P
Sbjct: 279 PPQYSALQRIIKKFKVEIILDPETAHPNLIVSEDKKRVRFTKRKQKVP-GFPKRFTVKPV 337
Query: 273 VLGAQGFGAGRHCWEVETADAAS-----CRDS----SGEDADDEESHYAVGAAGESVQRK 323
VLG F +GRH WE+E D + C+DS + + ++ + + +
Sbjct: 338 VLGFPYFHSGRHFWEIEVGDKSEWAIGICKDSLPTKARRPSSAQQECWRIELQDDGYHAP 397
Query: 324 GCAPGPL 330
G P PL
Sbjct: 398 GAFPTPL 404
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 82 LEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLPCPRR 141
L+ A C +C DPV + C H+FCR+C+ + W E P CP C C
Sbjct: 10 LQAEAKCSICLDYLSDPVTIECGHNFCRSCIQQSW----LDLQELFP--CPVCRHQCQEG 63
Query: 142 SLRSNVRLAVEVRISRELR 160
RSN +L + I++ L+
Sbjct: 64 HFRSNTQLGRMIEIAKLLQ 82
>gi|22749269 ring finger protein 129 [Homo sapiens]
Length = 471
Score = 63.2 bits (152), Expect = 3e-10
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 212 LPEDYPVVKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLP 271
LP Y + +++ D+ LD TAH +LL+S DR++V+ D P+RF P
Sbjct: 279 LPPQYSGLDRIIKPFQVDVILDLNTAHPQLLVSEDRKAVRYERKKRNICYD-PRRFYVCP 337
Query: 272 AVLGAQGFGAGRHCWEVETADAAS-----CRDSSGEDADDEESHY-AVGAAGESVQRKGC 325
AVLG+Q F +GRH WEVE + C+D + D+ S A G ++
Sbjct: 338 AVLGSQRFSSGRHYWEVEVGNKPKWILGVCQDCLLRNWQDQPSVLGGFWAIGRYMKSGYV 397
Query: 326 APGPLGERIFPL 337
A GP ++ P+
Sbjct: 398 ASGPKTTQLLPV 409
Score = 52.8 bits (125), Expect = 5e-07
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 82 LEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLPCPRR 141
L++ ++CP+C +DPV + C H+FCR+CL+ W T CP C P +
Sbjct: 10 LQEESSCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDT------FPCPVCRFCFPYK 63
Query: 142 SLRSNVRLAVEVRISRELR 160
S R N +L I+++L+
Sbjct: 64 SFRRNPQLRNLTEIAKQLQ 82
>gi|37622899 ring finger protein 137 [Homo sapiens]
Length = 485
Score = 63.2 bits (152), Expect = 3e-10
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Query: 219 VKKMLHRLTADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQG 278
++++L AD+ LDP TA+ RL++S DR+ V P D P+RF + VLG+Q
Sbjct: 294 LREILKTYAADVRLDPDTAYSRLIVSEDRKRVHYGDTNQKLP-DNPERFYRYNIVLGSQC 352
Query: 279 FGAGRHCWEVETADAASCRDSSGEDADDEESHYAVGAAGESVQRK 323
+GRH WEVE D S + +G ++V RK
Sbjct: 353 ISSGRHYWEVEVGD---------------RSEWGLGVCKQNVDRK 382
Score = 55.5 bits (132), Expect = 7e-08
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 78 LVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPPATGTEASPTACPCCGLP 137
LVE + + CP+C +P+ + C HSFC +CL+ W P ++ CP C P
Sbjct: 6 LVEAIVEEVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGE--SQNWGYTCPLCRAP 63
Query: 138 CPRRSLRSNVRLAVEVRISRELR 160
R+LR N +LA V R LR
Sbjct: 64 VQPRNLRPNWQLANVVEKVRLLR 86
>gi|63054855 erythroblast membrane-associated protein precursor
[Homo sapiens]
Length = 475
Score = 62.8 bits (151), Expect = 5e-10
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 16/95 (16%)
Query: 230 LTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVE 289
+TLDP TAH +L++S D+R V+L P P D P+RF+ + ++LG++ F G H WEV
Sbjct: 240 VTLDPDTAHPKLILSEDQRCVRLGDRRQPVP-DNPQRFDFVVSILGSEYFTTGCHYWEVY 298
Query: 290 TADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
D ++ + +G ESV RKG
Sbjct: 299 VGD---------------KTKWILGVCSESVSRKG 318
>gi|19923536 erythroblast membrane-associated protein precursor
[Homo sapiens]
Length = 475
Score = 62.8 bits (151), Expect = 5e-10
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 16/95 (16%)
Query: 230 LTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEVE 289
+TLDP TAH +L++S D+R V+L P P D P+RF+ + ++LG++ F G H WEV
Sbjct: 240 VTLDPDTAHPKLILSEDQRCVRLGDRRQPVP-DNPQRFDFVVSILGSEYFTTGCHYWEVY 298
Query: 290 TADAASCRDSSGEDADDEESHYAVGAAGESVQRKG 324
D ++ + +G ESV RKG
Sbjct: 299 VGD---------------KTKWILGVCSESVSRKG 318
>gi|5901908 butyrophilin, subfamily 3, member A3 isoform a [Homo
sapiens]
Length = 584
Score = 62.0 bits (149), Expect = 8e-10
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 228 ADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWE 287
AD+ LDP TA+ LL+S D+RSVQ A P D P+RF VLG + F +GRH WE
Sbjct: 340 ADVILDPDTANAILLVSEDQRSVQRAEEPRDLP-DNPERFEWRYCVLGCENFTSGRHYWE 398
Query: 288 VETADAASCRDSSGEDADDEESHYAVGAAGESVQRK 323
VE D + +G ++V+RK
Sbjct: 399 VEVGD---------------RKEWHIGVCSKNVERK 419
>gi|37574628 butyrophilin, subfamily 3, member A3 isoform b [Homo
sapiens]
Length = 542
Score = 62.0 bits (149), Expect = 8e-10
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 228 ADLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWE 287
AD+ LDP TA+ LL+S D+RSVQ A P D P+RF VLG + F +GRH WE
Sbjct: 298 ADVILDPDTANAILLVSEDQRSVQRAEEPRDLP-DNPERFEWRYCVLGCENFTSGRHYWE 356
Query: 288 VETADAASCRDSSGEDADDEESHYAVGAAGESVQRK 323
VE D + +G ++V+RK
Sbjct: 357 VEVGD---------------RKEWHIGVCSKNVERK 377
>gi|44680130 tripartite motif-containing 7 isoform 2 [Homo sapiens]
Length = 329
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 16/109 (14%)
Query: 229 DLTLDPGTAHRRLLISADRRSVQLAPPGTPAPPDGPKRFNQLPAVLGAQGFGAGRHCWEV 288
+LTLDP TA+ RL++S D + V+L P + P RF+ VL + GF +GRH WEV
Sbjct: 161 ELTLDPDTANPRLILSLDLKGVRLGERAQDLP-NHPCRFDTNTRVLASCGFSSGRHHWEV 219
Query: 289 ETADAASCRDSSGEDADDEESHYAVGAAGESVQRKGCAPGPLGERIFPL 337
E + +A G A ESV+RKG P E ++ L
Sbjct: 220 EVG---------------SKDGWAFGVARESVRRKGLTPFTPEEGVWAL 253
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,959,758
Number of Sequences: 37866
Number of extensions: 892702
Number of successful extensions: 4714
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 4202
Number of HSP's gapped (non-prelim): 507
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.