Guide to the Human Genome
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Name: KCNN2 Sequence: fasta or formatted (231aa) NCBI GI: 25777647
Description:

small conductance calcium-activated potassium channel protein 2 isoform b

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [579aa] small conductance calcium-activated potassium channel protein 2 i...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         16           3
 C cysteine            1.3          3           1
 D aspartate           4.3         10           1
 E glutamate           5.6         13           1
 F phenylalanine       2.2          5           1
 G glycine             3.9          9           1
 H histidine           3.0          7           1
 I isoleucine          6.5         15           1
 K lysine              8.2         19           2
 L leucine             9.5         22           2
 M methionine          3.9          9           2
 N asparagine          4.3         10           1
 P proline             1.7          4           2
 Q glutamine           5.2         12           3
 R arginine            7.4         17           4
 S serine              8.2         19           3
 T threonine           7.8         18           1
 V valine              6.5         15           2
 W tryptophan          0.9          2           1
 Y tyrosine            2.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small conductance calcium-activated potassium channe... 
KCNN2                 1.000   small conductance calcium-activated potassium channe...
KCNN3                 0.723   small conductance calcium-activated potassium channe...
KCNN3                 0.723   small conductance calcium-activated potassium chann...
KCNN1                 0.648   potassium intermediate/small conductance calcium-act...
KCNN4                 0.378   intermediate conductance calcium-activated potassium ...
KCNQ5                 0.054   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.044   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.044   potassium voltage-gated channel, KQT-like subfamily,...
KCNQ4                 0.040   potassium voltage-gated channel KQT-like protein 4 i...
KCNQ4                 0.040   potassium voltage-gated channel KQT-like protein 4 i...
KCNQ5                 0.035   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.035   potassium voltage-gated channel, KQT-like subfamily...
KCNQ2                 0.035   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ2                 0.035   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ2                 0.035   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ2                 0.035   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ2                 0.035   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ3                 0.033   potassium voltage-gated channel KQT-like protein 3 [H...
KCNQ1                 0.030   potassium voltage-gated channel, KQT-like subfamily,...
KCNQ1                 0.030   potassium voltage-gated channel, KQT-like subfamily,...
KCND1                 0.030   potassium voltage-gated channel, Shal-related subfam...
ADCY5                 0.030   adenylate cyclase 5 
KCNB1                 0.028   potassium voltage-gated channel, Shab-related subfami...
KCND2                 0.028   potassium voltage-gated channel, Shal-related subfami...
KCND3                 0.028   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.028   potassium voltage-gated channel, Shal-related subfam...
KCNB2                 0.028   potassium voltage-gated channel, Shab-related subfam...
CCDC46                0.028   coiled-coil domain containing 46 isoform a 
KCNA2                 0.028   potassium voltage-gated channel, shaker-related subfa...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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