Guide to the Human Genome
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Name: KCNN3 Sequence: fasta or formatted (426aa) NCBI GI: 25777650
Description:

small conductance calcium-activated potassium channel protein 3 isoform b

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [731aa] small conductance calcium-activated potassium channel protein 3 i...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         31           3
 C cysteine            1.9          8           1
 D aspartate           4.5         19           2
 E glutamate           4.0         17           1
 F phenylalanine       3.8         16           2
 G glycine             4.0         17           1
 H histidine           3.1         13           1
 I isoleucine          8.7         37           2
 K lysine              5.6         24           2
 L leucine            12.7         54           2
 M methionine          3.8         16           2
 N asparagine          2.8         12           1
 P proline             2.8         12           1
 Q glutamine           3.8         16           5
 R arginine            5.2         22           1
 S serine              8.5         36           4
 T threonine           7.3         31           2
 V valine              6.3         27           2
 W tryptophan          1.4          6           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small conductance calcium-activated potassium channe... 
KCNN3                 0.988   small conductance calcium-activated potassium chann...
KCNN2                 0.792   small conductance calcium-activated potassium channe...
KCNN1                 0.723   potassium intermediate/small conductance calcium-act...
KCNN2                 0.381   small conductance calcium-activated potassium channe...
KCNN4                 0.363   intermediate conductance calcium-activated potassium ...
KCNQ5                 0.031   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.030   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.030   potassium voltage-gated channel, KQT-like subfamily,...
KCNQ4                 0.030   potassium voltage-gated channel KQT-like protein 4 i...
KCNQ4                 0.030   potassium voltage-gated channel KQT-like protein 4 i...
KCNQ2                 0.026   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ2                 0.026   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ2                 0.025   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ2                 0.025   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ2                 0.025   potassium voltage-gated channel KQT-like protein 2 i...
KCNQ5                 0.025   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.025   potassium voltage-gated channel, KQT-like subfamily...
KCND2                 0.023   potassium voltage-gated channel, Shal-related subfami...
KCND1                 0.023   potassium voltage-gated channel, Shal-related subfam...
KCNS2                 0.023   potassium voltage-gated channel, delayed-rectifier, ...
KCND3                 0.022   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.022   potassium voltage-gated channel, Shal-related subfam...
KCNQ3                 0.022   potassium voltage-gated channel KQT-like protein 3 [H...
EEA1                  0.021   early endosome antigen 1, 162kD 
KCNA6                 0.020   potassium voltage-gated channel, shaker-related subfa...
KCNQ1                 0.018   potassium voltage-gated channel, KQT-like subfamily,...
KCNQ1                 0.018   potassium voltage-gated channel, KQT-like subfamily,...
KCNB2                 0.018   potassium voltage-gated channel, Shab-related subfam...
KCNA5                 0.017   potassium voltage-gated channel, shaker-related subf...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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