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Search of human proteins with 25777643
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|25777643 potassium intermediate/small conductance
calcium-activated channel, subfamily N, member 1 [Homo sapiens]
(543 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|25777643 potassium intermediate/small conductance calcium-act... 1097 0.0
gi|25777645 small conductance calcium-activated potassium channe... 714 0.0
gi|116805330 small conductance calcium-activated potassium chann... 698 0.0
gi|25777650 small conductance calcium-activated potassium channe... 613 e-176
gi|4504859 intermediate conductance calcium-activated potassium ... 332 4e-91
gi|25777647 small conductance calcium-activated potassium channe... 303 3e-82
gi|236462242 potassium voltage-gated channel, KQT-like subfamily... 50 4e-06
gi|26638655 potassium voltage-gated channel KQT-like protein 4 i... 49 9e-06
gi|26638653 potassium voltage-gated channel KQT-like protein 4 i... 49 9e-06
gi|28373065 potassium voltage-gated channel, KQT-like subfamily,... 49 1e-05
gi|236461719 potassium voltage-gated channel, KQT-like subfamily... 46 8e-05
gi|26051260 potassium voltage-gated channel KQT-like protein 2 i... 46 1e-04
gi|236462079 potassium voltage-gated channel, KQT-like subfamily... 45 2e-04
gi|236461942 potassium voltage-gated channel, KQT-like subfamily... 45 2e-04
gi|9789987 potassium voltage-gated channel, Shal-related subfami... 45 2e-04
gi|191252785 centrobin, centrosomal BRCA2 interacting protein is... 45 2e-04
gi|80861396 centrobin, centrosomal BRCA2 interacting protein iso... 45 2e-04
gi|32479525 potassium voltage-gated channel, KQT-like subfamily,... 44 3e-04
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,... 44 3e-04
gi|27436981 potassium voltage-gated channel, Shal-related subfam... 44 4e-04
gi|4758630 potassium voltage-gated channel KQT-like protein 3 [H... 44 5e-04
gi|26051262 potassium voltage-gated channel KQT-like protein 2 i... 44 5e-04
gi|26051264 potassium voltage-gated channel KQT-like protein 2 i... 44 5e-04
gi|26051266 potassium voltage-gated channel KQT-like protein 2 i... 44 5e-04
gi|26051268 potassium voltage-gated channel KQT-like protein 2 i... 43 6e-04
gi|27436984 potassium voltage-gated channel, Shal-related subfam... 43 8e-04
gi|27436986 potassium voltage-gated channel, Shal-related subfam... 43 8e-04
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 42 0.001
gi|27436974 potassium voltage-gated channel, Shab-related subfam... 41 0.003
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 40 0.007
>gi|25777643 potassium intermediate/small conductance
calcium-activated channel, subfamily N, member 1 [Homo
sapiens]
Length = 543
Score = 1097 bits (2838), Expect = 0.0
Identities = 543/543 (100%), Positives = 543/543 (100%)
Query: 1 MNSHSYNGSVGRPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPR 60
MNSHSYNGSVGRPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPR
Sbjct: 1 MNSHSYNGSVGRPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPR 60
Query: 61 GQPQDQDDDEDDEEDEAGRQRASGKPSNVGHRLGHRRALFEKRKRLSDYALIFGMFGIVV 120
GQPQDQDDDEDDEEDEAGRQRASGKPSNVGHRLGHRRALFEKRKRLSDYALIFGMFGIVV
Sbjct: 61 GQPQDQDDDEDDEEDEAGRQRASGKPSNVGHRLGHRRALFEKRKRLSDYALIFGMFGIVV 120
Query: 121 MVTETELSWGVYTKESLYSFALKCLISLSTAILLGLVVLYHAREIQLFMVDNGADDWRIA 180
MVTETELSWGVYTKESLYSFALKCLISLSTAILLGLVVLYHAREIQLFMVDNGADDWRIA
Sbjct: 121 MVTETELSWGVYTKESLYSFALKCLISLSTAILLGLVVLYHAREIQLFMVDNGADDWRIA 180
Query: 181 MTCERVFLISLELAVCAIHPVPGHYRFTWTARLAFTYAPSVAEADVDVLLSIPMFLRLYL 240
MTCERVFLISLELAVCAIHPVPGHYRFTWTARLAFTYAPSVAEADVDVLLSIPMFLRLYL
Sbjct: 181 MTCERVFLISLELAVCAIHPVPGHYRFTWTARLAFTYAPSVAEADVDVLLSIPMFLRLYL 240
Query: 241 LGRVMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWT 300
LGRVMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWT
Sbjct: 241 LGRVMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWT 300
Query: 301 VRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTAL 360
VRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTAL
Sbjct: 301 VRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTAL 360
Query: 361 VVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARV 420
VVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARV
Sbjct: 361 VVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARV 420
Query: 421 RKHQRKFLQAIHQAQKLRSVKIEQGKLNDQANTLTDLAKTQTVMYDLVSELHAQHEELEA 480
RKHQRKFLQAIHQAQKLRSVKIEQGKLNDQANTLTDLAKTQTVMYDLVSELHAQHEELEA
Sbjct: 421 RKHQRKFLQAIHQAQKLRSVKIEQGKLNDQANTLTDLAKTQTVMYDLVSELHAQHEELEA 480
Query: 481 RLATLESRLDALGASLQALPGLIAQAIRPPPPPLPPRPGPGPQDQAARSSPCRWTPVAPS 540
RLATLESRLDALGASLQALPGLIAQAIRPPPPPLPPRPGPGPQDQAARSSPCRWTPVAPS
Sbjct: 481 RLATLESRLDALGASLQALPGLIAQAIRPPPPPLPPRPGPGPQDQAARSSPCRWTPVAPS 540
Query: 541 DCG 543
DCG
Sbjct: 541 DCG 543
>gi|25777645 small conductance calcium-activated potassium channel
protein 2 isoform a [Homo sapiens]
Length = 579
Score = 714 bits (1844), Expect = 0.0
Identities = 372/536 (69%), Positives = 419/536 (78%), Gaps = 31/536 (5%)
Query: 1 MNSHSYNGSVGRPLGSGPGALGRDPPDPEAGHPPQPPHSPG-----LQVVVAKSEPARPS 55
M+S YNG V RPL + + P QPP S G A + A S
Sbjct: 1 MSSCRYNGGVMRPLSNLSASRRNLHEMDSEAQPLQPPASVGGGGGASSPSAAAAAAAAVS 60
Query: 56 PGSPR---GQPQDQDDDE--------------------DDEEDEAGRQRASGKPSNVGHR 92
+P +P+ + + +G + + K N+G++
Sbjct: 61 SSAPEIVVSKPEHNNSNNLALYGTGGGGSTGGGGGGGGSGHGSSSGTKSSKKKNQNIGYK 120
Query: 93 LGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSFALKCLISLSTAI 152
LGHRRALFEKRKRLSDYALIFGMFGIVVMV ETELSWG Y K SLYS ALKCLISLST I
Sbjct: 121 LGHRRALFEKRKRLSDYALIFGMFGIVVMVIETELSWGAYDKASLYSLALKCLISLSTII 180
Query: 153 LLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFTWTAR 212
LLGL+++YHAREIQLFMVDNGADDWRIAMT ER+F I LE+ VCAIHP+PG+Y FTWTAR
Sbjct: 181 LLGLIIVYHAREIQLFMVDNGADDWRIAMTYERIFFICLEILVCAIHPIPGNYTFTWTAR 240
Query: 213 LAFTYAPSVAEADVDVLLSIPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFNTRF 272
LAF+YAPS ADVD++LSIPMFLRLYL+ RVMLLHSK+FTDASSRSIGALNKI FNTRF
Sbjct: 241 LAFSYAPSTTTADVDIILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNKINFNTRF 300
Query: 273 VMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIG 332
VMKTLMTICPGTVLLVFSIS WIIAAWTVR CERYHD+Q+VTSNFLGAMWLISITFLSIG
Sbjct: 301 VMKTLMTICPGTVLLVFSISLWIIAAWTVRACERYHDQQDVTSNFLGAMWLISITFLSIG 360
Query: 333 YGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVK 392
YGDMVP+TYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVK
Sbjct: 361 YGDMVPNTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVK 420
Query: 393 NAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAIHQAQKLRSVKIEQGKLNDQAN 452
NAAANVLRETWLIYK+T+LVKK D A+VRKHQRKFLQAIHQ LRSVK+EQ KLNDQAN
Sbjct: 421 NAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQ---LRSVKMEQRKLNDQAN 477
Query: 453 TLTDLAKTQTVMYDLVSELHAQHEELEARLATLESRLDALGASLQALPGLIAQAIR 508
TL DLAKTQ +MYD++S+L+ + E+ E R+ TLE++L+ L S+ ALPGLI+Q IR
Sbjct: 478 TLVDLAKTQNIMYDMISDLNERSEDFEKRIVTLETKLETLIGSIHALPGLISQTIR 533
>gi|116805330 small conductance calcium-activated potassium channel
protein 3 isoform a [Homo sapiens]
Length = 731
Score = 698 bits (1802), Expect = 0.0
Identities = 343/424 (80%), Positives = 386/424 (91%), Gaps = 3/424 (0%)
Query: 85 KPSNVGHRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSFALKC 144
K N+G++LGHRRALFEKRKRLSDYALIFGMFGIVVMV ETELSWG+Y+K+S++S ALKC
Sbjct: 262 KNQNIGYKLGHRRALFEKRKRLSDYALIFGMFGIVVMVIETELSWGLYSKDSMFSLALKC 321
Query: 145 LISLSTAILLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGH 204
LISLST ILLGL++ YH RE+QLF++DNGADDWRIAMT ER+ ISLE+ VCAIHP+PG
Sbjct: 322 LISLSTIILLGLIIAYHTREVQLFVIDNGADDWRIAMTYERILYISLEMLVCAIHPIPGE 381
Query: 205 YRFTWTARLAFTYAPSVAEADVDVLLSIPMFLRLYLLGRVMLLHSKIFTDASSRSIGALN 264
Y+F WTARLAF+Y PS AEADVD++LSIPMFLRLYL+ RVMLLHSK+FTDASSRSIGALN
Sbjct: 382 YKFFWTARLAFSYTPSRAEADVDIILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALN 441
Query: 265 KITFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLI 324
KI FNTRFVMKTLMTICPGTVLLVFSIS WIIAAWTVRVCERYHD+Q+VTSNFLGAMWLI
Sbjct: 442 KINFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRVCERYHDQQDVTSNFLGAMWLI 501
Query: 325 SITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMD 384
SITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMD
Sbjct: 502 SITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMD 561
Query: 385 TQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAIHQAQKLRSVKIEQ 444
TQLTKR+KNAAANVLRETWLIYKHT+L+KK D A+VRKHQRKFLQAIHQ LRSVK+EQ
Sbjct: 562 TQLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQ---LRSVKMEQ 618
Query: 445 GKLNDQANTLTDLAKTQTVMYDLVSELHAQHEELEARLATLESRLDALGASLQALPGLIA 504
KL+DQANTL DL+K Q VMYDL++EL+ + E+LE ++ +LES+L+ L AS +LP LIA
Sbjct: 619 RKLSDQANTLVDLSKMQNVMYDLITELNDRSEDLEKQIGSLESKLEHLTASFNSLPLLIA 678
Query: 505 QAIR 508
+R
Sbjct: 679 DTLR 682
>gi|25777650 small conductance calcium-activated potassium channel
protein 3 isoform b [Homo sapiens]
Length = 426
Score = 613 bits (1582), Expect = e-176
Identities = 302/375 (80%), Positives = 340/375 (90%), Gaps = 3/375 (0%)
Query: 134 KESLYSFALKCLISLSTAILLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLEL 193
K+S++S ALKCLISLST ILLGL++ YH RE+QLF++DNGADDWRIAMT ER+ ISLE+
Sbjct: 6 KDSMFSLALKCLISLSTIILLGLIIAYHTREVQLFVIDNGADDWRIAMTYERILYISLEM 65
Query: 194 AVCAIHPVPGHYRFTWTARLAFTYAPSVAEADVDVLLSIPMFLRLYLLGRVMLLHSKIFT 253
VCAIHP+PG Y+F WTARLAF+Y PS AEADVD++LSIPMFLRLYL+ RVMLLHSK+FT
Sbjct: 66 LVCAIHPIPGEYKFFWTARLAFSYTPSRAEADVDIILSIPMFLRLYLIARVMLLHSKLFT 125
Query: 254 DASSRSIGALNKITFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEV 313
DASSRSIGALNKI FNTRFVMKTLMTICPGTVLLVFSIS WIIAAWTVRVCERYHD+Q+V
Sbjct: 126 DASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRVCERYHDQQDV 185
Query: 314 TSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTK 373
TSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTK
Sbjct: 186 TSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTK 245
Query: 374 AEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAIHQ 433
AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHT+L+KK D A+VRKHQRKFLQAIHQ
Sbjct: 246 AEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQ 305
Query: 434 AQKLRSVKIEQGKLNDQANTLTDLAKTQTVMYDLVSELHAQHEELEARLATLESRLDALG 493
LRSVK+EQ KL+DQANTL DL+K Q VMYDL++EL+ + E+LE ++ +LES+L+ L
Sbjct: 306 ---LRSVKMEQRKLSDQANTLVDLSKMQNVMYDLITELNDRSEDLEKQIGSLESKLEHLT 362
Query: 494 ASLQALPGLIAQAIR 508
AS +LP LIA +R
Sbjct: 363 ASFNSLPLLIADTLR 377
>gi|4504859 intermediate conductance calcium-activated potassium
channel protein 1 [Homo sapiens]
Length = 427
Score = 332 bits (852), Expect = 4e-91
Identities = 186/412 (45%), Positives = 248/412 (60%), Gaps = 11/412 (2%)
Query: 93 LGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSFALKCLISLSTAI 152
L R+ L E+ K L+ +AL+ GI +MV E+ W +LY F +KC IS+ST +
Sbjct: 12 LRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFL 71
Query: 153 LLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFTWTAR 212
LL L+V +HA+E+QLFM DNG DWR+A+T + I LEL VC +HP P
Sbjct: 72 LLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRGPPCVQDL 131
Query: 213 LAFTYAPSVAEADV---DVLLSIPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFN 269
A +P + + LLS+ M LRLYL+ R +LL S + +AS RSIGALN++ F
Sbjct: 132 GAPLTSPQPWPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQVRFR 191
Query: 270 TRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFL 329
FV K M PG +LL ++ W+ AW + V ER T + +WLI ITFL
Sbjct: 192 HWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAER--QAVNATGHLSDTLWLIPITFL 249
Query: 330 SIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTK 389
+IGYGD+VP T GK VCL TG+MG CTAL+VAVVARKLE KAEKHVHNFMMD Q TK
Sbjct: 250 TIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHNFMMDIQYTK 309
Query: 390 RVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAIHQAQKLRSVKIEQGKLND 449
+K +AA VL+E W+ YKHTR + + R+HQRK L AI+ R V+++ KL +
Sbjct: 310 EMKESAARVLQEAWMFYKHTR---RKESHAARRHQRKLLAAIN---AFRQVRLKHRKLRE 363
Query: 450 QANTLTDLAKTQTVMYDLVSELHAQHEELEARLATLESRLDALGASLQALPG 501
Q N++ D++K ++YDL L + H LE ++ TL +LDAL L G
Sbjct: 364 QVNSMVDISKMHMILYDLQQNLSSSHRALEKQIDTLAGKLDALTELLSTALG 415
>gi|25777647 small conductance calcium-activated potassium channel
protein 2 isoform b [Homo sapiens]
Length = 231
Score = 303 bits (775), Expect = 3e-82
Identities = 152/188 (80%), Positives = 170/188 (90%), Gaps = 3/188 (1%)
Query: 321 MWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHN 380
MWLISITFLSIGYGDMVP+TYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHN
Sbjct: 1 MWLISITFLSIGYGDMVPNTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHN 60
Query: 381 FMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAIHQAQKLRSV 440
FMMDTQLTKRVKNAAANVLRETWLIYK+T+LVKK D A+VRKHQRKFLQAIHQ LRSV
Sbjct: 61 FMMDTQLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQ---LRSV 117
Query: 441 KIEQGKLNDQANTLTDLAKTQTVMYDLVSELHAQHEELEARLATLESRLDALGASLQALP 500
K+EQ KLNDQANTL DLAKTQ +MYD++S+L+ + E+ E R+ TLE++L+ L S+ ALP
Sbjct: 118 KMEQRKLNDQANTLVDLAKTQNIMYDMISDLNERSEDFEKRIVTLETKLETLIGSIHALP 177
Query: 501 GLIAQAIR 508
GLI+Q IR
Sbjct: 178 GLISQTIR 185
>gi|236462242 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 5 [Homo sapiens]
Length = 822
Score = 50.4 bits (119), Expect = 4e-06
Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 25/205 (12%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I +++ V + E+ D + S + A+W +IT +IGYGD P T+ G+ + ++G
Sbjct: 278 IFSSFLVYLVEK--DANKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLG 335
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKK 414
AL ++ L E+H ++ +N AAN+++ W Y K
Sbjct: 336 ISFFALPAGILGSGFALKVQEQHRQKHF------EKRRNPAANLIQCVWRSYAADE--KS 387
Query: 415 PDQARVRKHQRKFLQAIHQAQKLRSVKIEQGKLNDQANTLTDLAKTQTV-------MYDL 467
A + H L+A+H K EQG+ + + +AK + + D+
Sbjct: 388 VSIATWKPH----LKALHTCS---PTKKEQGEASSRIMKF-HVAKRKFKETLRPYDVKDV 439
Query: 468 VSELHAQHEELEARLATLESRLDAL 492
+ + A H ++ R+ +L++R+D +
Sbjct: 440 IEQYSAGHLDMLCRIKSLQTRVDQI 464
>gi|26638655 potassium voltage-gated channel KQT-like protein 4
isoform b [Homo sapiens]
Length = 641
Score = 49.3 bits (116), Expect = 9e-06
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I A++ V + E+ D S++ ++W +IT +IGYGD PHT+ G+ + ++G
Sbjct: 250 IFASFLVYLAEK--DANSDFSSYADSLWWGTITLTTIGYGDKTPHTWLGRVLAAGFALLG 307
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIY 406
AL ++ L E+H ++ + AAN+++ W +Y
Sbjct: 308 ISFFALPAGILGSGFALKVQEQHRQKHF------EKRRMPAANLIQAAWRLY 353
>gi|26638653 potassium voltage-gated channel KQT-like protein 4
isoform a [Homo sapiens]
Length = 695
Score = 49.3 bits (116), Expect = 9e-06
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I A++ V + E+ D S++ ++W +IT +IGYGD PHT+ G+ + ++G
Sbjct: 250 IFASFLVYLAEK--DANSDFSSYADSLWWGTITLTTIGYGDKTPHTWLGRVLAAGFALLG 307
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIY 406
AL ++ L E+H ++ + AAN+++ W +Y
Sbjct: 308 ISFFALPAGILGSGFALKVQEQHRQKHF------EKRRMPAANLIQAAWRLY 353
>gi|28373065 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 1 [Homo sapiens]
Length = 932
Score = 48.9 bits (115), Expect = 1e-05
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 28/183 (15%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I +++ V + E+ D + S + A+W +IT +IGYGD P T+ G+ + ++G
Sbjct: 278 IFSSFLVYLVEK--DANKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLG 335
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYK------- 407
AL ++ L E+H ++ +N AAN+++ W Y
Sbjct: 336 ISFFALPAGILGSGFALKVQEQHRQKHF------EKRRNPAANLIQCVWRSYAADEKSVS 389
Query: 408 -----------HTRLVKKPDQARVRKHQR-KFLQAIHQAQ-KLRSVKIEQGKLNDQANTL 454
HT K +Q Q+ F + + A + +S+K Q + D+ +
Sbjct: 390 IATWKPHLKALHTCSPTKKEQGEASSSQKLSFKERVRMASPRGQSIKSRQASVGDRRSPS 449
Query: 455 TDL 457
TD+
Sbjct: 450 TDI 452
>gi|236461719 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 2 [Homo sapiens]
Length = 923
Score = 46.2 bits (108), Expect = 8e-05
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I +++ V + E+ D + S + A+W +IT +IGYGD P T+ G+ + ++G
Sbjct: 278 IFSSFLVYLVEK--DANKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLG 335
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKK 414
AL ++ L E+H ++ +N AAN+++ W Y K
Sbjct: 336 ISFFALPAGILGSGFALKVQEQHRQKHF------EKRRNPAANLIQCVWRSYAADE--KS 387
Query: 415 PDQARVRKHQRKFLQAIHQAQKL-------------RSVKIEQGKLNDQANTLTDL 457
A + H + QKL +S+K Q + D+ + TD+
Sbjct: 388 VSIATWKPHLKALHTCSPTNQKLSFKERVRMASPRGQSIKSRQASVGDRRSPSTDI 443
>gi|26051260 potassium voltage-gated channel KQT-like protein 2
isoform c [Homo sapiens]
Length = 844
Score = 45.8 bits (107), Expect = 1e-04
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I+A++ V + E+ + + + A+W IT +IGYGD P T+ G+ + ++G
Sbjct: 244 ILASFLVYLAEK--GENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIG 301
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKK 414
AL ++ L E+H ++ +N AA +++ W Y T L +
Sbjct: 302 VSFFALPAGILGSGFALKVQEQHRQKHF------EKRRNPAAGLIQSAWRFYA-TNLSRT 354
Query: 415 PDQARVRKHQR-------KFLQAIHQAQKLRSVKIEQG 445
+ + ++R + + ++Q + LR++K + G
Sbjct: 355 DLHSTWQYYERTVTVPMYRLIPPLNQLELLRNLKSKSG 392
>gi|236462079 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 4 [Homo sapiens]
Length = 951
Score = 44.7 bits (104), Expect = 2e-04
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I +++ V + E+ D + S + A+W +IT +IGYGD P T+ G+ + ++G
Sbjct: 278 IFSSFLVYLVEK--DANKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLG 335
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIY 406
AL ++ L E+H ++ +N AAN+++ W Y
Sbjct: 336 ISFFALPAGILGSGFALKVQEQHRQKHF------EKRRNPAANLIQCVWRSY 381
>gi|236461942 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 3 [Homo sapiens]
Length = 942
Score = 44.7 bits (104), Expect = 2e-04
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I +++ V + E+ D + S + A+W +IT +IGYGD P T+ G+ + ++G
Sbjct: 278 IFSSFLVYLVEK--DANKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLG 335
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIY 406
AL ++ L E+H ++ +N AAN+++ W Y
Sbjct: 336 ISFFALPAGILGSGFALKVQEQHRQKHF------EKRRNPAANLIQCVWRSY 381
>gi|9789987 potassium voltage-gated channel, Shal-related subfamily,
member 2 [Homo sapiens]
Length = 630
Score = 44.7 bits (104), Expect = 2e-04
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 36/184 (19%)
Query: 183 CERVFLISLELAVCAIHPVPGHYRFTWTARLAFTYAPSVAEADVDVLLSIPMFLRLYLLG 242
C +F + L + A P YRF + + +DV+ +P ++ L +
Sbjct: 236 CVMIFTVEYLLRLAA---APSRYRFVRSVM-----------SIIDVVAILPYYIGLVMTD 281
Query: 243 R-------VMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTICPGTVLLVFSISSWI 295
V L ++F I ++ + R + TL + L+FS++ I
Sbjct: 282 NEDVSGAFVTLRVFRVFR------IFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAI 335
Query: 296 IAAWTVRVCERYHDKQEVTSNFLG---AMWLISITFLSIGYGDMVPHTYCGK---GVCLL 349
I TV Y +K S F A W +T ++GYGDMVP T GK +C L
Sbjct: 336 IIFATVMF---YAEKGSSASKFTSIPAAFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSL 392
Query: 350 TGIM 353
+G++
Sbjct: 393 SGVL 396
>gi|191252785 centrobin, centrosomal BRCA2 interacting protein
isoform alpha [Homo sapiens]
Length = 903
Score = 44.7 bits (104), Expect = 2e-04
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 33/156 (21%)
Query: 383 MDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAI---HQ---AQK 436
++ ++T+R+ A + LR+ A +R+H RK LQ + HQ A +
Sbjct: 455 LEQRVTERLAQAQESSLRQA---------------ASLREHHRKQLQDLSGQHQQELASQ 499
Query: 437 LRSVKIEQGKLNDQANTLTD-----LAKTQTVMYDLVSELHAQHEELEARLATLESRLDA 491
L K+E + ++ + + LA+ Q V EL + +++LE + L RL A
Sbjct: 500 LAQFKVEMAEREERQQQVAEDYELRLAREQA----RVCELQSGNQQLEEQRVELVERLQA 555
Query: 492 -LGASLQALPGLIAQAIRPPPPPLPPR--PGPGPQD 524
L A L++ + PP PP PP PGPQ+
Sbjct: 556 MLQAHWDEANQLLSTTLPPPNPPAPPAGPSSPGPQE 591
>gi|80861396 centrobin, centrosomal BRCA2 interacting protein
isoform beta [Homo sapiens]
Length = 925
Score = 44.7 bits (104), Expect = 2e-04
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 33/156 (21%)
Query: 383 MDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAI---HQ---AQK 436
++ ++T+R+ A + LR+ A +R+H RK LQ + HQ A +
Sbjct: 455 LEQRVTERLAQAQESSLRQA---------------ASLREHHRKQLQDLSGQHQQELASQ 499
Query: 437 LRSVKIEQGKLNDQANTLTD-----LAKTQTVMYDLVSELHAQHEELEARLATLESRLDA 491
L K+E + ++ + + LA+ Q V EL + +++LE + L RL A
Sbjct: 500 LAQFKVEMAEREERQQQVAEDYELRLAREQA----RVCELQSGNQQLEEQRVELVERLQA 555
Query: 492 -LGASLQALPGLIAQAIRPPPPPLPPR--PGPGPQD 524
L A L++ + PP PP PP PGPQ+
Sbjct: 556 MLQAHWDEANQLLSTTLPPPNPPAPPAGPSSPGPQE 591
>gi|32479525 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 2 [Homo sapiens]
Length = 549
Score = 44.3 bits (103), Expect = 3e-04
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 15/153 (9%)
Query: 316 NFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVV----ARKLEL 371
++ A+W +T +IGYGD VP T+ GK + + AL ++ A K++
Sbjct: 171 SYADALWWGVVTVTTIGYGDKVPQTWVGKTIASCFSVFAISFFALPAGILGSGFALKVQQ 230
Query: 372 TKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAI 431
+ +KH + R AAA++++ W Y + +RK R
Sbjct: 231 KQRQKHFN----------RQIPAAASLIQTAWRCYAAENPDSSTWKIYIRKAPRSHTLLS 280
Query: 432 HQAQKLRSVKIEQGKLN-DQANTLTDLAKTQTV 463
+ +SV +++ K D+ N +T K TV
Sbjct: 281 PSPKPKKSVVVKKKKFKLDKDNGVTPGEKMLTV 313
>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 1 [Homo sapiens]
Length = 676
Score = 44.3 bits (103), Expect = 3e-04
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 15/153 (9%)
Query: 316 NFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVV----ARKLEL 371
++ A+W +T +IGYGD VP T+ GK + + AL ++ A K++
Sbjct: 298 SYADALWWGVVTVTTIGYGDKVPQTWVGKTIASCFSVFAISFFALPAGILGSGFALKVQQ 357
Query: 372 TKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAI 431
+ +KH + R AAA++++ W Y + +RK R
Sbjct: 358 KQRQKHFN----------RQIPAAASLIQTAWRCYAAENPDSSTWKIYIRKAPRSHTLLS 407
Query: 432 HQAQKLRSVKIEQGKLN-DQANTLTDLAKTQTV 463
+ +SV +++ K D+ N +T K TV
Sbjct: 408 PSPKPKKSVVVKKKKFKLDKDNGVTPGEKMLTV 440
>gi|27436981 potassium voltage-gated channel, Shal-related
subfamily, member 1 [Homo sapiens]
Length = 647
Score = 43.9 bits (102), Expect = 4e-04
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 271 RFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLG---AMWLISIT 327
R + TL + L+FS++ II TV Y +K +NF A W +T
Sbjct: 313 RILGYTLKSCASELGFLLFSLTMAIIIFATVMF---YAEKGTNKTNFTSIPAAFWYTIVT 369
Query: 328 FLSIGYGDMVPHTYCGK---GVCLLTGIM 353
++GYGDMVP T GK +C L+G++
Sbjct: 370 MTTLGYGDMVPSTIAGKIFGSICSLSGVL 398
>gi|4758630 potassium voltage-gated channel KQT-like protein 3 [Homo
sapiens]
Length = 872
Score = 43.5 bits (101), Expect = 5e-04
Identities = 57/270 (21%), Positives = 109/270 (40%), Gaps = 30/270 (11%)
Query: 152 ILLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFT-WT 210
I+LG ++L + + +G DW + + +F+ E A+ I R+ W
Sbjct: 132 IVLGCLILAVLTTFKEYETVSG--DWLLLLETFAIFIFGAEFAL-RIWAAGCCCRYKGWR 188
Query: 211 ARLAFTYAPSVAEADVDVLLSIPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFNT 270
RL F P + D+ VL++ + + G V+ + S R + L + +
Sbjct: 189 GRLKFARKP-LCMLDIFVLIASVPVVAVGNQGNVLATSLR-----SLRFLQILRMLRMDR 242
Query: 271 RFVMKTLM--TICPGTVLLV----FSISSWIIAAWTVRVCERY--------HDKQEVTSN 316
R L+ IC + L+ + I++++ V + E+ + +E
Sbjct: 243 RGGTWKLLGSAICAHSKELITAWYIGFLTLILSSFLVYLVEKDVPEVDAQGEEMKEEFET 302
Query: 317 FLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEK 376
+ A+W IT +IGYGD P T+ G+ + ++G AL ++ L L E+
Sbjct: 303 YADALWWGLITLATIGYGDKTPKTWEGRLIAATFSLIGVSFFALPAGILGSGLALKVQEQ 362
Query: 377 HVHNFMMDTQLTKRVKNAAANVLRETWLIY 406
H ++ + AA +++ W Y
Sbjct: 363 HRQKHF------EKRRKPAAELIQAAWRYY 386
>gi|26051262 potassium voltage-gated channel KQT-like protein 2
isoform b [Homo sapiens]
Length = 854
Score = 43.5 bits (101), Expect = 5e-04
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I+A++ V + E+ + + + A+W IT +IGYGD P T+ G+ + ++G
Sbjct: 244 ILASFLVYLAEK--GENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIG 301
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNF----------MMDTQLTKRVKNAAANVLRETWL 404
AL ++ L E+H ++ + N + L TW
Sbjct: 302 VSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQ 361
Query: 405 IYKHTRLVKKPDQARVRKHQRKFLQAIHQAQKLRSVKIEQG 445
Y+ T V + + ++Q + LR++K + G
Sbjct: 362 YYERTVTVPMYSSQTQTYGASRLIPPLNQLELLRNLKSKSG 402
>gi|26051264 potassium voltage-gated channel KQT-like protein 2
isoform a [Homo sapiens]
Length = 872
Score = 43.5 bits (101), Expect = 5e-04
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I+A++ V + E+ + + + A+W IT +IGYGD P T+ G+ + ++G
Sbjct: 244 ILASFLVYLAEK--GENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIG 301
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNF----------MMDTQLTKRVKNAAANVLRETWL 404
AL ++ L E+H ++ + N + L TW
Sbjct: 302 VSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQ 361
Query: 405 IYKHTRLVKKPDQARVRKHQRKFLQAIHQAQKLRSVKIEQG 445
Y+ T V + + ++Q + LR++K + G
Sbjct: 362 YYERTVTVPMYSSQTQTYGASRLIPPLNQLELLRNLKSKSG 402
>gi|26051266 potassium voltage-gated channel KQT-like protein 2
isoform d [Homo sapiens]
Length = 841
Score = 43.5 bits (101), Expect = 5e-04
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I+A++ V + E+ + + + A+W IT +IGYGD P T+ G+ + ++G
Sbjct: 244 ILASFLVYLAEK--GENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIG 301
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNF----------MMDTQLTKRVKNAAANVLRETWL 404
AL ++ L E+H ++ + N + L TW
Sbjct: 302 VSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQ 361
Query: 405 IYKHTRLVKKPDQARVRKHQRKFLQAIHQAQKLRSVKIEQG 445
Y+ T V + + ++Q + LR++K + G
Sbjct: 362 YYERTVTVPMYSSQTQTYGASRLIPPLNQLELLRNLKSKSG 402
>gi|26051268 potassium voltage-gated channel KQT-like protein 2
isoform e [Homo sapiens]
Length = 393
Score = 43.1 bits (100), Expect = 6e-04
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 295 IIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMG 354
I+A++ V + E+ + + + A+W IT +IGYGD P T+ G+ + ++G
Sbjct: 244 ILASFLVYLAEK--GENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIG 301
Query: 355 AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIY 406
AL ++ L E+H ++ +N AA +++ W Y
Sbjct: 302 VSFFALPAGILGSGFALKVQEQHRQKHF------EKRRNPAAGLIQSAWRFY 347
>gi|27436984 potassium voltage-gated channel, Shal-related
subfamily, member 3 isoform 1 [Homo sapiens]
Length = 655
Score = 42.7 bits (99), Expect = 8e-04
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 271 RFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLG---AMWLISIT 327
R + TL + L+FS++ II TV Y +K S F + W +T
Sbjct: 308 RILGYTLKSCASELGFLLFSLTMAIIIFATVMF---YAEKGSSASKFTSIPASFWYTIVT 364
Query: 328 FLSIGYGDMVPHTYCGK---GVCLLTGIM 353
++GYGDMVP T GK +C L+G++
Sbjct: 365 MTTLGYGDMVPKTIAGKIFGSICSLSGVL 393
>gi|27436986 potassium voltage-gated channel, Shal-related
subfamily, member 3 isoform 2 [Homo sapiens]
Length = 636
Score = 42.7 bits (99), Expect = 8e-04
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 271 RFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLG---AMWLISIT 327
R + TL + L+FS++ II TV Y +K S F + W +T
Sbjct: 308 RILGYTLKSCASELGFLLFSLTMAIIIFATVMF---YAEKGSSASKFTSIPASFWYTIVT 364
Query: 328 FLSIGYGDMVPHTYCGK---GVCLLTGIM 353
++GYGDMVP T GK +C L+G++
Sbjct: 365 MTTLGYGDMVPKTIAGKIFGSICSLSGVL 393
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 3 SHSYNGSVGRPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVV-----AKSEPARPSPG 57
S S G+P G P P P+ G+ PQ P PG +KS+ AR PG
Sbjct: 87 SRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPG 146
Query: 58 SPRGQPQDQDDDEDDEEDEAG 78
P+G PQ + ++ AG
Sbjct: 147 KPQGPPQQEGNNPQGPPPPAG 167
Score = 31.6 bits (70), Expect = 1.9
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 12 RPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPRGQPQ 64
+P G P P P+ G+ PQ P PG SP SP G+PQ
Sbjct: 46 KPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ 98
Score = 30.4 bits (67), Expect = 4.3
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 3 SHSYNGSVGRPLG--SGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPR 60
S S G+P G G + PP P G+P QP P Q + P P G P
Sbjct: 138 SQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQ---PQGPPRPPQGGRPS 194
Query: 61 GQPQ 64
PQ
Sbjct: 195 RPPQ 198
Score = 29.6 bits (65), Expect = 7.4
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 11 GRPLGSGPGALGRDP--PDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPRGQPQDQD 67
G P G P G P P P G P PP G P PG P+G P D
Sbjct: 34 GNPQGPSPQG-GNKPQGPPPPPGKPQGPPPQGG------NKPQGPPPPGKPQGPPPQGD 85
>gi|27436974 potassium voltage-gated channel, Shab-related
subfamily, member 2 [Homo sapiens]
Length = 911
Score = 40.8 bits (94), Expect = 0.003
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 285 VLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGK 344
+L++F +I + V E+ D + TS + W +IT ++GYGD+ P T GK
Sbjct: 337 LLILFLAMGIMIFSSLVFFAEKDEDATKFTS-IPASFWWATITMTTVGYGDIYPKTLLGK 395
Query: 345 ---GVCLLTGIMGAGCTALVVAVVARKL-ELTKAEKHVHNFMMDTQLTKRVK 392
G+C + G++ AL + ++ E K +K + + +R K
Sbjct: 396 IVGGLCCIAGVL---VIALPIPIIVNNFSEFYKEQKRQEKAIKRREALERAK 444
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 39.7 bits (91), Expect = 0.007
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 11 GRPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPRGQPQDQDDDE 70
G+P G P + P G P PP G +KS+ AR PG P+G PQ + ++
Sbjct: 238 GKPQGPPPQGGNKPQGPPPPGKPQGPPAQGG-----SKSQSARSPPGKPQGPPQQEGNNP 292
Query: 71 DDEEDEAG 78
AG
Sbjct: 293 QGPPPPAG 300
Score = 33.5 bits (75), Expect = 0.51
Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 3 SHSYNGSVGRPLGSGPGALGRDP--PDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPR 60
S S G+P G P G P P P G P PP G K P PG P+
Sbjct: 148 SRSPRSPPGKPQGPPPQG-GNQPQGPPPPPGKPQGPPPQGG------KKPQGPPPPGKPQ 200
Query: 61 GQPQDQDDDEDDEEDEAGRQRASGKPSNVGHR 92
G P D + + G P G++
Sbjct: 201 GPPPQGDKSRSSQSPPG---KPQGPPPQGGNQ 229
Score = 33.1 bits (74), Expect = 0.67
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 12 RPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVA----KSEPARPSPGSPRGQPQDQD 67
+P G P P P+ G+ PQ P PG KS R PG P+G P
Sbjct: 46 KPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGG 105
Query: 68 DDEDDEEDEAGRQRASGKPSNVGHR 92
+ G+ + G P G+R
Sbjct: 106 NQPQGPPPPPGKPQ--GPPPQGGNR 128
Score = 30.4 bits (67), Expect = 4.3
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 12 RPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVA----KSEPARPSPGSPRGQP 63
+P G P P P+ G+ PQ P PG KS R PG P+G P
Sbjct: 107 QPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP 162
Score = 30.4 bits (67), Expect = 4.3
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 11 GRPLGSGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPRGQPQDQDDDE 70
G+P G P G+ P P PQ P G + ++S P +P P+G Q Q
Sbjct: 177 GKPQGPPPQG-GKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPP 235
Query: 71 DDEEDEAGRQRASGKP 86
+ + + KP
Sbjct: 236 PPGKPQGPPPQGGNKP 251
Score = 30.4 bits (67), Expect = 4.3
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 3 SHSYNGSVGRPLG--SGPGALGRDPPDPEAGHPPQPPHSPGLQVVVAKSEPARPSPGSPR 60
S S G+P G G + PP P G+P QP P Q + P P G P
Sbjct: 271 SQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQ---PQGPPRPPQGGRPS 327
Query: 61 GQPQ 64
PQ
Sbjct: 328 RPPQ 331
Score = 29.6 bits (65), Expect = 7.4
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 11 GRPLGSGP-GALGRDP---------PDPEAGH----PPQPPHSPGLQVVVAKSEP-ARPS 55
G+P G P G R P P P+ G+ PP PP P + P P
Sbjct: 75 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPP 134
Query: 56 PGSPRGQPQDQD 67
PG P+G P D
Sbjct: 135 PGKPQGPPPQGD 146
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,614,156
Number of Sequences: 37866
Number of extensions: 1318473
Number of successful extensions: 23223
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 467
Number of HSP's that attempted gapping in prelim test: 17097
Number of HSP's gapped (non-prelim): 5888
length of query: 543
length of database: 18,247,518
effective HSP length: 107
effective length of query: 436
effective length of database: 14,195,856
effective search space: 6189393216
effective search space used: 6189393216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.