Guide to the Human Genome
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Name: NUP155 Sequence: fasta or formatted (1391aa) NCBI GI: 24430149
Description:

nucleoporin 155kDa isoform 1

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [1332aa] nucleoporin 155kDa isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         97           3
 C cysteine            2.0         28           1
 D aspartate           5.0         70           2
 E glutamate           5.8         81           2
 F phenylalanine       3.7         51           2
 G glycine             5.2         72           2
 H histidine           2.4         33           2
 I isoleucine          5.9         82           2
 K lysine              4.3         60           2
 L leucine            12.2        170           2
 M methionine          2.6         36           2
 N asparagine          4.0         55           2
 P proline             5.8         80           3
 Q glutamine           6.5         90           2
 R arginine            4.7         66           3
 S serine              8.8        122           3
 T threonine           4.1         57           2
 V valine              6.5         90           3
 W tryptophan          0.9         13           1
 Y tyrosine            2.7         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleoporin 155kDa isoform 1 
NUP155                0.959   nucleoporin 155kDa isoform 2 
FLJ22184              0.006   PREDICTED: hypothetical protein LOC80164 
SOX30                 0.005   SRY (sex determining region Y)-box 30 isoform a [Hom...
NUMA1                 0.005   nuclear mitotic apparatus protein 1 
LOC100130506          0.004   PREDICTED: hypothetical protein 
LOC100288911          0.004   PREDICTED: hypothetical protein XP_002342241 
PPRC1                 0.004   peroxisome proliferator-activated receptor gamma, co...
TPR                   0.004   nuclear pore complex-associated protein TPR 
LOC100129890          0.004   PREDICTED: hypothetical protein 
LOC100129890          0.004   PREDICTED: hypothetical protein 
MICAL3                0.004   microtubule associated monoxygenase, calponin and L...
EGR1                  0.004   early growth response 1 
FLJ22184              0.004   PREDICTED: hypothetical protein FLJ22184 
DST                   0.004   dystonin isoform 1e precursor 
ANKRD20A1             0.004   ankyrin repeat domain 20 family, member A1 
RCOR2                 0.004   REST corepressor 2 
SDCCAG8               0.004   serologically defined colon cancer antigen 8 
RRBP1                 0.004   ribosome binding protein 1 
RRBP1                 0.004   ribosome binding protein 1 
WIPF1                 0.004   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.004   WAS/WASL interacting protein family, member 1 
SYN1                  0.004   synapsin I isoform Ia 
SYN1                  0.004   synapsin I isoform Ib 
GOLGB1                0.004   golgi autoantigen, golgin subfamily b, macrogolgin ...
HGS                   0.003   hepatocyte growth factor-regulated tyrosine kinase su...
LDB3                  0.003   LIM domain binding 3 isoform 2 
LDB3                  0.003   LIM domain binding 3 isoform 1 
NACA                  0.003   nascent polypeptide-associated complex alpha subuni...
CEP110                0.003   centrosomal protein 110kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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