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Search of human proteins with 24430137
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24430137 L antigen family, member 3 [Homo sapiens]
(143 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24430137 L antigen family, member 3 [Homo sapiens] 293 3e-80
gi|4503119 cancer/testis antigen 1B [Homo sapiens] 83 7e-17
gi|21281685 cancer/testis antigen 1A [Homo sapiens] 83 7e-17
gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens] 73 7e-14
gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] 54 3e-08
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 38 0.003
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 37 0.007
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 37 0.007
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 37 0.007
gi|4504713 insulinoma-associated 1 [Homo sapiens] 36 0.010
gi|61835232 growth differentiation factor 7 preproprotein [Homo ... 36 0.013
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.016
gi|153070260 myristoylated alanine-rich protein kinase C substra... 35 0.016
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 35 0.016
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens] 35 0.021
gi|195947369 junction-mediating and regulatory protein [Homo sap... 35 0.028
gi|223671856 coiled-coil domain containing 85C [Homo sapiens] 34 0.036
gi|145309320 forkhead box Q1 [Homo sapiens] 34 0.036
gi|5174517 SMAD family member 7 [Homo sapiens] 34 0.036
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 34 0.036
gi|7706435 headcase [Homo sapiens] 34 0.048
gi|134142824 forkhead box D2 [Homo sapiens] 34 0.048
gi|4758630 potassium voltage-gated channel KQT-like protein 3 [H... 33 0.062
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 33 0.062
gi|13775236 scratch [Homo sapiens] 33 0.062
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 33 0.062
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 33 0.062
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 33 0.062
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 33 0.11
gi|22538470 eomesodermin [Homo sapiens] 32 0.14
>gi|24430137 L antigen family, member 3 [Homo sapiens]
Length = 143
Score = 293 bits (750), Expect = 3e-80
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MRDADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRP 60
MRDADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRP
Sbjct: 1 MRDADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRP 60
Query: 61 HIFTLSVPFPTPLEAEIAHGSLAPDAEPHQRVVGKDLTVSGRILVVRWKAEDCRLLRISV 120
HIFTLSVPFPTPLEAEIAHGSLAPDAEPHQRVVGKDLTVSGRILVVRWKAEDCRLLRISV
Sbjct: 61 HIFTLSVPFPTPLEAEIAHGSLAPDAEPHQRVVGKDLTVSGRILVVRWKAEDCRLLRISV 120
Query: 121 INFLDQLSLVVRTMQRFGPPVSR 143
INFLDQLSLVVRTMQRFGPPVSR
Sbjct: 121 INFLDQLSLVVRTMQRFGPPVSR 143
>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
Length = 180
Score = 83.2 bits (204), Expect = 7e-17
Identities = 64/148 (43%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 7 DAGGGADGGDGR----GGHSCRG-GVDTAAAPAGGAPPAHAPGPGRDAASA--------A 53
D GG GG G GG RG G A+ P GGAP GP AAS A
Sbjct: 25 DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR----GPHGGAASGLNGCCRCGA 80
Query: 54 RGSRMRPHIFTLSVPFPTPLEAEIAHGSLAPDAE--PHQRVVGKDLTVSGRILVVRWKAE 111
RG R F L++PF TP+EAE+A SLA DA P V+ K+ TVSG IL +R A
Sbjct: 81 RGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGVLLKEFTVSGNILTIRLTAA 140
Query: 112 DCRLLRISVINFLDQLSLVVRTMQRFGP 139
D R L++S+ + L QLSL++ Q F P
Sbjct: 141 DHRQLQLSISSCLQQLSLLMWITQCFLP 168
>gi|21281685 cancer/testis antigen 1A [Homo sapiens]
Length = 180
Score = 83.2 bits (204), Expect = 7e-17
Identities = 64/148 (43%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 7 DAGGGADGGDGR----GGHSCRG-GVDTAAAPAGGAPPAHAPGPGRDAASA--------A 53
D GG GG G GG RG G A+ P GGAP GP AAS A
Sbjct: 25 DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR----GPHGGAASGLNGCCRCGA 80
Query: 54 RGSRMRPHIFTLSVPFPTPLEAEIAHGSLAPDAE--PHQRVVGKDLTVSGRILVVRWKAE 111
RG R F L++PF TP+EAE+A SLA DA P V+ K+ TVSG IL +R A
Sbjct: 81 RGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGVLLKEFTVSGNILTIRLTAA 140
Query: 112 DCRLLRISVINFLDQLSLVVRTMQRFGP 139
D R L++S+ + L QLSL++ Q F P
Sbjct: 141 DHRQLQLSISSCLQQLSLLMWITQCFLP 168
>gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens]
Length = 180
Score = 73.2 bits (178), Expect = 7e-14
Identities = 60/148 (40%), Positives = 75/148 (50%), Gaps = 19/148 (12%)
Query: 7 DAGGGADGGDGR----GGHSCRG-GVDTAAAPAGGAPPAHAPGPGRDAASAARG----SR 57
D GG GG G GG RG G A+ P GGAP GP AASA G
Sbjct: 25 DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR----GPHGGAASAQDGRCPCGA 80
Query: 58 MRPHIFTL----SVPFPTPLEAEIAHGSLAPDAEPHQR--VVGKDLTVSGRILVVRWKAE 111
RP L ++PF +P+EAE+ L+ DA P R V KD TVSG +L +R A
Sbjct: 81 RRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFIRLTAA 140
Query: 112 DCRLLRISVINFLDQLSLVVRTMQRFGP 139
D R L++S+ + L QLSL++ Q F P
Sbjct: 141 DHRQLQLSISSCLQQLSLLMWITQCFLP 168
>gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens]
Length = 210
Score = 54.3 bits (129), Expect = 3e-08
Identities = 47/121 (38%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 7 DAGGGADGGDGR----GGHSCRG-GVDTAAAPAGGAPPAHAPGPGRDAASAARG----SR 57
D GG GG G GG RG G A+ P GGAP GP AASA G
Sbjct: 25 DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR----GPHGGAASAQDGRCPCGA 80
Query: 58 MRPHIFTL----SVPFPTPLEAEIAHGSLAPDAEPHQR--VVGKDLTVSGRILVVRWKAE 111
RP L ++PF +P+EAE+ L+ DA P R V KD TVSG +L + + +
Sbjct: 81 RRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFMSVRDQ 140
Query: 112 D 112
D
Sbjct: 141 D 141
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 37.7 bits (86), Expect = 0.003
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 2 RDADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARG 55
R A+ GGG GG G G C+G +T A+P A APGP R+ + A+G
Sbjct: 171 RGAEEARGGG--GGLGARGSGCQGAAETDASPGATVDEAAAPGP-RENSPVAQG 221
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 36.6 bits (83), Expect = 0.007
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 3 DADADAGGGADGGDGRGGHSCRGGVDTAAAPAG-GAPPAHAPGPGRDAASAARGSRMRPH 61
D +GGG GG G GG S GG A+ G + PA G A A G +PH
Sbjct: 156 DKVGGSGGGGHGGGGGGGSSNAGGGGGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPH 215
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 36.6 bits (83), Expect = 0.007
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 2 RDADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASA 52
R A+ GGG GG G G C+G +T A+P A APGP ++ A
Sbjct: 574 RGAEEARGGG--GGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVA 622
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 36.6 bits (83), Expect = 0.007
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 2 RDADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRPH 61
R+ GGG GG G GG S GG AP+GG+ H+ GP A SR RP
Sbjct: 2288 RNHSGGGGGGGSGGSGGGGGSGGGG-----APSGGS--GHSGGPS-SCGGAPSTSRSRPS 2339
Query: 62 IFTLSVPFPTPLEAEIAHGSLA 83
V P+ A S A
Sbjct: 2340 RIPQPVRHHPPVLVSSAASSQA 2361
>gi|4504713 insulinoma-associated 1 [Homo sapiens]
Length = 510
Score = 36.2 bits (82), Expect = 0.010
Identities = 32/89 (35%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 9 GGGADGGDGRGGHSCRGGVDTAAAPA---------GGAPPAHAPGPG--RDAASAARGSR 57
GGG G G GG GG APA GA A PGPG A+A R
Sbjct: 140 GGGGGGASGAGGGGTCGGDPLLFAPAELKMGTAFSAGAEAARGPGPGPPLPPAAALRPPG 199
Query: 58 MRPHIFTLSVPFPTPLEAEIAHGSLAPDA 86
RP T + P P +A A G+ P A
Sbjct: 200 KRPPPPTAAEP---PAKAVKAPGAKKPKA 225
>gi|61835232 growth differentiation factor 7 preproprotein [Homo
sapiens]
Length = 450
Score = 35.8 bits (81), Expect = 0.013
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 11 GADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRPHIFTLSVPFP 70
G GG G GG + AA PA P A A R A S R + PH F +S+
Sbjct: 41 GGGGGGGGGGRTLAQAAGAAAVPAAAVPRARA--ARRAAGSGFRNGSVVPHHFMMSL--Y 96
Query: 71 TPLEAEIAHGSLAPDAEPHQR 91
L G+ A A H R
Sbjct: 97 RSLAGRAPAGAAAVSASGHGR 117
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.4 bits (80), Expect = 0.016
Identities = 23/54 (42%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 11 GADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGP----GRDAASAARGSRMRP 60
GADG G G G A P G A PA PGP G A ARGS P
Sbjct: 818 GADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPP 871
Score = 31.2 bits (69), Expect = 0.31
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 11 GADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPG-PGRDAASAARGSRMRP 60
G G G GH G+D A AG A P PG PG + A G R P
Sbjct: 257 GTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLP 307
Score = 30.4 bits (67), Expect = 0.53
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 6 ADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGP-GRDAASAARGSR 57
AD GA G +G G + G A P+G P PGP G A GS+
Sbjct: 390 ADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSK 442
Score = 28.1 bits (61), Expect = 2.6
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 11 GADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPG----PGRDAASAARGSR 57
G G G G G A P G + APG PGRD + A+G R
Sbjct: 986 GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDR 1036
Score = 27.7 bits (60), Expect = 3.4
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 11 GADGGDG-RGGHSCRG--GVDTAAAPAGGAPPAHAPGPGRDAASAARGSR 57
G G G RGG RG G D A P G A +PGP S R
Sbjct: 479 GLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR 528
Score = 27.3 bits (59), Expect = 4.4
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 3 DADADAGGGADGGDGRGGHSCRGGVDTAAAPAG--GAPPA-HAPGP-GRDAASAARG 55
++ + GA+G GR G G PAG GAP A APGP G S RG
Sbjct: 1011 ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 1067
Score = 26.6 bits (57), Expect = 7.6
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 11 GADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPG-PGRDAASAARG 55
G G G G G AA P G PA PG PG A G
Sbjct: 311 GRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAG 356
Score = 26.2 bits (56), Expect = 9.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 11 GADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPG-PGRDAASAARGS 56
G +GG G G + G P G PA G PG D + A G+
Sbjct: 902 GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGT 948
Score = 26.2 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 11 GADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARG 55
G G G G G A P G PP A PG+D + G
Sbjct: 1118 GPPGPPGSPGEQGPSGASGPAGPRG--PPGSAGAPGKDGLNGLPG 1160
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 35.4 bits (80), Expect = 0.016
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 5 DADAGGGADGGDGRGGHS-CRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRPHIF 63
+A GG A+ GG GG AAA AG A A PG +AA+ G+
Sbjct: 177 EAGEGGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGA------- 229
Query: 64 TLSVPFPTPLEAEIAHGSLAPDAEP 88
P EA+ ++AP+ P
Sbjct: 230 ----AGGDPQEAKPQEAAVAPEKPP 250
>gi|154091020 leucine-rich repeats and calponin homology (CH)
domain containing 2 [Homo sapiens]
Length = 765
Score = 35.4 bits (80), Expect = 0.016
Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 4 ADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRPHIF 63
A + GGG GG G GG GG TA GGA G G
Sbjct: 2 AASQGGGGNSGGGGCGGGGSSGGCGTAGGGGGGAGGGGGGGGG----------------- 44
Query: 64 TLSVPFPTP 72
TL VP P P
Sbjct: 45 TLVVPIPVP 53
>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
Length = 1200
Score = 35.0 bits (79), Expect = 0.021
Identities = 49/162 (30%), Positives = 63/162 (38%), Gaps = 36/162 (22%)
Query: 14 GGDGRGGHSCR-GGVDTAAAPAGGAPPAHAPGPG-----RDAASAARGSRM--RPHIFTL 65
GG G GG S R G D+A P GG A G G DA+ G+ R +F L
Sbjct: 187 GGGGSGGESRRAGAADSAPYPGGGGNGASGGGSGGSKRRLDASEGGGGTNPGGRSSVFEL 246
Query: 66 SVPFPTP-------------LEAEIAHGSLAPDAEPHQRVVGKDLTVSGRILVVRWKAED 112
V TP EA++A S R D+ V+G+I V A +
Sbjct: 247 QVA-DTPDGEKQPQLIVKGVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATE 305
Query: 113 C--RLLR-------ISVINFLD-----QLSLVVRTMQRFGPP 140
RLLR +SV++ +D QL V R PP
Sbjct: 306 SVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPP 347
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 34.7 bits (78), Expect = 0.028
Identities = 42/146 (28%), Positives = 56/146 (38%), Gaps = 36/146 (24%)
Query: 6 ADAGGGA-DGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGS-------- 56
A+AGG A DG G G + RG + A+ A +PGP R +A A GS
Sbjct: 68 AEAGGAASDGSRGPGSPAGRGRPEATAS----ATLVRSPGPRRSSAWAEGGSPRSTRSLL 123
Query: 57 ---------------RMRPHIFTLSVPFPTPLEAEIAHGSLAPDAEP--------HQRVV 93
R+R + +P EA+ A G+ A A P R+V
Sbjct: 124 GDPRLRSPGSKGAESRLRSPVRAKPIPGQKTSEADDAAGAAAAAARPAPREAQVSSVRIV 183
Query: 94 GKDLTVSGRILVVRWKAEDCRLLRIS 119
TVS I V+ ED L +S
Sbjct: 184 SASGTVSEEIEVLEMVKEDEAPLALS 209
>gi|223671856 coiled-coil domain containing 85C [Homo sapiens]
Length = 419
Score = 34.3 bits (77), Expect = 0.036
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 2 RDADADAGGGADGGDGRGGHSCRGGVDTAAA----PAGGAPPAHAPGPGRDAASAARGSR 57
R A A G + GG G GG R +D+ A+ +GGAP A A G +++++ GS
Sbjct: 155 RAALAATGAASGGGGGGGGAGSRSSIDSQASLSGPLSGGAPGAGARDVGDGSSTSSAGSG 214
Query: 58 MRP 60
P
Sbjct: 215 GSP 217
Score = 28.9 bits (63), Expect = 1.5
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 3 DADADAGGGADGG-DGRGGHSCRGGVDTAAAPAGGAPPAH--------APGPGRDAASAA 53
D+ A G GG G G G T++A +GG+P H PGP + A
Sbjct: 181 DSQASLSGPLSGGAPGAGARDVGDGSSTSSAGSGGSPDHHHHVPPPLLPPGPHK--APDG 238
Query: 54 RGSRMRPHIFTLSVPFPTPLEAEIAHGSLAPDAEPHQRVVGKDLTVSG-RILVVRWKAED 112
+ R + LS P P I +G P + +++ K + G ++L + + +
Sbjct: 239 KAGATRRSLDDLSAP---PHHRSIPNGLHDPSSTYIRQLESKVRLLEGDKLLAQQAGSGE 295
Query: 113 CRLLR 117
R LR
Sbjct: 296 FRTLR 300
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 34.3 bits (77), Expect = 0.036
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 8 AGGGADGGDGRGGHSCRGG--------VDTAAAPAGGAPPAHAPGPGRDAASAARGSRMR 59
AGGGA G G S GG AAA A A GPG A + G+R +
Sbjct: 53 AGGGARDTQGDGEQSAGGGPGAEEAIPAAAAAAVVAEGAEAGAAGPGAGGAGSGEGARSK 112
Query: 60 PH 61
P+
Sbjct: 113 PY 114
>gi|5174517 SMAD family member 7 [Homo sapiens]
Length = 426
Score = 34.3 bits (77), Expect = 0.036
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 3 DADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRPHI 62
D + AGGG GG+ RG G D+ A AGG P A G A RG++ H
Sbjct: 23 DEEEGAGGGGGGGELRG----EGATDSRAHGAGGGGPGRA---GCCLGKAVRGAKGHHH- 74
Query: 63 FTLSVPFPTPLEAEIAHGSLA 83
P P A A G+ A
Sbjct: 75 -----PHPPAAGAGAAGGAEA 90
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 34.3 bits (77), Expect = 0.036
Identities = 21/43 (48%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 9 GGGADGGDGRGGHSCRG-GVDTAAAPAGGAPP---AHAPGPGR 47
GGG GG GR HS R G T A PA P A P PGR
Sbjct: 10 GGGGGGGQGRHRHSSRAPGTRTPATPARSPRPPLCAPRPAPGR 52
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 33.9 bits (76), Expect = 0.048
Identities = 20/50 (40%), Positives = 23/50 (46%)
Query: 4 ADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAA 53
A A G A G G GG + GG T AA A A A A G ++ A A
Sbjct: 46 AAAGCGAAAAGAPGAGGAAGAGGAGTGAANAAAAAGAAAAGDAKNEAPCA 95
Score = 30.0 bits (66), Expect = 0.69
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 4 ADADAGGGADGGDGRGGHSCRGGVDTAAAP-AGGAPPAHAPGPGRDAASAARGS 56
A A A G A GG C G A AP AGGA A G G A+AA G+
Sbjct: 31 AAAGAAGAAAGGALAAAAGC--GAAAAGAPGAGGAAGAGGAGTGAANAAAAAGA 82
Score = 27.7 bits (60), Expect = 3.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 5 DADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGS 56
+ + G GA G G + G + AAA GA A APG G A + G+
Sbjct: 22 EQENGAGALAAAGAAGAAAGGAL--AAAAGCGAAAAGAPGAGGAAGAGGAGT 71
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 33.9 bits (76), Expect = 0.048
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 7 DAGGGADGGDGRGGHSCRGGVDTAAAPAGG--APPAHAPG-PGRDAASAARGSRMRPHIF 63
DAGGGA GG G +D GG APP G PG A+AA +
Sbjct: 394 DAGGGAGGGGAGAGQRPSFSIDHIMGHGGGGAAPPGAGEGSPGPPFAAAAGPGGQAQVLA 453
Query: 64 TLSVPFPTPLEAEI 77
L+ P P+ I
Sbjct: 454 MLTAPALAPVAGHI 467
Score = 31.6 bits (70), Expect = 0.24
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 3 DADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRPHI 62
+A+AD A+ + GG C G A A G A A +PGPG AA A G P
Sbjct: 62 EAEADL---AEDEEESGG--CSDGEPRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPS 116
Query: 63 FTLSV--PFPTPLEAEIAHGSLAPDAEPHQRVVGKDLT--VSGRILVVRWK 109
+ P P + IA ++A P +R+ ++ +SGR R K
Sbjct: 117 GGAATRSPLVKPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREK 167
>gi|4758630 potassium voltage-gated channel KQT-like protein 3
[Homo sapiens]
Length = 872
Score = 33.5 bits (75), Expect = 0.062
Identities = 20/43 (46%), Positives = 21/43 (48%)
Query: 2 RDADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPG 44
R A AGGG DGG G GG + G D AAA APG
Sbjct: 6 RRAAGAAGGGGDGGGGGGGAANPAGGDAAAAGDEERKVGLAPG 48
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 33.5 bits (75), Expect = 0.062
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 9 GGGADGGDGRGGHSCRGGVDTAAAP---AGGAPPAHAPGPGRDAASAARGSRMRP 60
GGG GG GG GG +A P AGGA A A G G G P
Sbjct: 20 GGGGGGGSSGGGGGAGGGYSSACRPGPRAGGAAAAAACGGGAALGLLPPGKTQSP 74
Score = 33.1 bits (74), Expect = 0.081
Identities = 20/52 (38%), Positives = 22/52 (42%)
Query: 5 DADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGS 56
D GGG GG G GG S +AAA + A A A AA A S
Sbjct: 139 DDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAAAAGAGAPS 190
Score = 32.3 bits (72), Expect = 0.14
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 5 DADAGGGADGGDGRGGHSCRGGVDTAA---------APAGGAPPAHAPGPGRDAASAARG 55
D+ GGGA GG G G S AA A A A A A P AA AA G
Sbjct: 140 DSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAAAAGAGAPSVGAAGAADG 199
Score = 28.5 bits (62), Expect = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 8 AGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAA 53
AGG D G GG GG ++++PA + A + AA+AA
Sbjct: 134 AGGPGDDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAA 179
>gi|13775236 scratch [Homo sapiens]
Length = 348
Score = 33.5 bits (75), Expect = 0.062
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 3 DADADAGGGA------DGGDGRGGHSCRGGVDTAAAP-AGGAPPAHAPGP-GRDAASAAR 54
D DA GGGA G GRGG G + A P A GA HA G G+ A+++
Sbjct: 146 DGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSN 205
Query: 55 GSR 57
SR
Sbjct: 206 LSR 208
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 33.5 bits (75), Expect = 0.062
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 8 AGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARG 55
AGGG GG G GG S GG A AGGA AA+AA G
Sbjct: 248 AGGGGGGGGGGGGGS-GGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGG 294
Score = 33.5 bits (75), Expect = 0.062
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 9 GGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPG 46
GGG GG G GG + GG A A A A A G G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 32.3 bits (72), Expect = 0.14
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 4 ADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARG 55
A GGG GG G GG GG A AG A A AA+AA G
Sbjct: 248 AGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAA------AAAAAAG 293
Score = 31.6 bits (70), Expect = 0.24
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 9 GGGADGGDGRGGHSCRG---GVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRP 60
GGG+ GG G GG G G AAA A A G G +SA G P
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
Score = 27.7 bits (60), Expect = 3.4
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 4 ADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAAS-AARGS 56
A A AGGG GG G GG S GV ++ GG G G + S AA GS
Sbjct: 288 AAAAAGGG--GGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGS 339
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 33.5 bits (75), Expect = 0.062
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 8 AGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARG 55
AGGG GG G GG S GG A AGGA AA+AA G
Sbjct: 248 AGGGGGGGGGGGGGS-GGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGG 294
Score = 33.5 bits (75), Expect = 0.062
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 9 GGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPG 46
GGG GG G GG + GG A A A A A G G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 32.3 bits (72), Expect = 0.14
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 4 ADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARG 55
A GGG GG G GG GG A AG A A AA+AA G
Sbjct: 248 AGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAA------AAAAAAG 293
Score = 31.6 bits (70), Expect = 0.24
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 9 GGGADGGDGRGGHSCRG---GVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRP 60
GGG+ GG G GG G G AAA A A G G +SA G P
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
Score = 27.7 bits (60), Expect = 3.4
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 4 ADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAAS-AARGS 56
A A AGGG GG G GG S GV ++ GG G G + S AA GS
Sbjct: 288 AAAAAGGG--GGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGS 339
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 33.5 bits (75), Expect = 0.062
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 8 AGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARG 55
AGGG GG G GG S GG A AGGA AA+AA G
Sbjct: 248 AGGGGGGGGGGGGGS-GGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGG 294
Score = 33.5 bits (75), Expect = 0.062
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 9 GGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPG 46
GGG GG G GG + GG A A A A A G G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 32.3 bits (72), Expect = 0.14
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 4 ADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARG 55
A GGG GG G GG GG A AG A A AA+AA G
Sbjct: 248 AGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAA------AAAAAAG 293
Score = 31.6 bits (70), Expect = 0.24
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 9 GGGADGGDGRGGHSCRG---GVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRP 60
GGG+ GG G GG G G AAA A A G G +SA G P
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
Score = 27.7 bits (60), Expect = 3.4
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 4 ADADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAAS-AARGS 56
A A AGGG GG G GG S GV ++ GG G G + S AA GS
Sbjct: 288 AAAAAGGG--GGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGS 339
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 32.7 bits (73), Expect = 0.11
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 14 GGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASAARGSRMRPHIFTLSVPFPTP- 72
GGDGRG G A AG PA +P +A +AAR S+ + + P P
Sbjct: 146 GGDGRGVARASLGDKAGAGRAGRGRPAQSPA---EADAAARASKSLKLLSSALPPHLRPA 202
Query: 73 LEAEIAHGSLAPDAEPHQRVVG 94
+ G A ++ P R VG
Sbjct: 203 AKTRAVAGPTAKESPPALRTVG 224
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 32.3 bits (72), Expect = 0.14
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 6 ADAGGGADGGDGRGGHSCRGGVDTAAAPAGGAPPAHAPGPGRDAASA--------ARGSR 57
A G GA G G GG S GG + GA P + P PG AA + GS
Sbjct: 206 AQFGPGAGAGSGAGGSSGGGGGPGTYQYSQGA-PLYGPYPGAAAAGSCGGLGGLGVPGSG 264
Query: 58 MRPHIFTLSVP 68
R H++ + P
Sbjct: 265 FRAHVYLCNRP 275
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,080,815
Number of Sequences: 37866
Number of extensions: 398497
Number of successful extensions: 5505
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 3816
Number of HSP's gapped (non-prelim): 1666
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.