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Search of human proteins with 24308452
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308452 WD repeat domain 85 [Homo sapiens]
(452 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308452 WD repeat domain 85 [Homo sapiens] 953 0.0
gi|4506439 retinoblastoma binding protein 7 [Homo sapiens] 54 3e-07
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 54 4e-07
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 54 4e-07
gi|58331266 WD repeat domain 59 [Homo sapiens] 54 4e-07
gi|4507703 tumor suppressing subtransferable candidate 1 [Homo s... 53 5e-07
gi|237820620 glutamate-rich WD repeat containing 1 [Homo sapiens] 49 1e-05
gi|4505731 peroxisomal biogenesis factor 7 [Homo sapiens] 47 3e-05
gi|188219762 denticleless homolog [Homo sapiens] 47 4e-05
gi|217330644 WD repeat domain 12 protein [Homo sapiens] 47 4e-05
gi|83779014 katanin p80 subunit B 1 [Homo sapiens] 45 2e-04
gi|24431950 PRP4 pre-mRNA processing factor 4 homolog [Homo sapi... 45 2e-04
gi|207029439 retinoblastoma binding protein 4 isoform c [Homo sa... 42 9e-04
gi|207029415 retinoblastoma binding protein 4 isoform b [Homo sa... 42 9e-04
gi|5032027 retinoblastoma binding protein 4 isoform a [Homo sapi... 42 9e-04
gi|13376840 WD repeat domain 61 [Homo sapiens] 42 9e-04
gi|216548382 WD repeat domain 47 isoform 3 [Homo sapiens] 42 0.001
gi|216548378 WD repeat domain 47 isoform 1 [Homo sapiens] 42 0.001
gi|216548347 WD repeat domain 47 isoform 2 [Homo sapiens] 42 0.001
gi|65787364 coronin, actin binding protein, 1B [Homo sapiens] 40 0.003
gi|14149734 coronin, actin binding protein, 1B [Homo sapiens] 40 0.003
gi|168229161 coronin 7 [Homo sapiens] 40 0.004
gi|14149696 SEC31 homolog B [Homo sapiens] 40 0.004
gi|13129110 WD repeat domain 77 [Homo sapiens] 40 0.004
gi|62234438 Notchless gene homolog isoform b [Homo sapiens] 40 0.004
gi|62234461 Notchless gene homolog isoform a [Homo sapiens] 40 0.004
gi|118402582 cell division cycle 20 [Homo sapiens] 40 0.006
gi|209969680 Fzr1 protein isoform 1 [Homo sapiens] 39 0.007
gi|209969678 Fzr1 protein isoform 3 [Homo sapiens] 39 0.007
gi|33620742 Fzr1 protein isoform 2 [Homo sapiens] 39 0.007
>gi|24308452 WD repeat domain 85 [Homo sapiens]
Length = 452
Score = 953 bits (2463), Expect = 0.0
Identities = 452/452 (100%), Positives = 452/452 (100%)
Query: 1 MMGCFALQTVDTELTADSVEWCPLQGCRHLLACGTYQLRRPEDRPAGPQNKGGMEVKEPQ 60
MMGCFALQTVDTELTADSVEWCPLQGCRHLLACGTYQLRRPEDRPAGPQNKGGMEVKEPQ
Sbjct: 1 MMGCFALQTVDTELTADSVEWCPLQGCRHLLACGTYQLRRPEDRPAGPQNKGGMEVKEPQ 60
Query: 61 VRLGRLFLYSFNDNNSIHPLVEVQRKDTSAILDMKWCHIPVAGHALLGLADASGSIQLLR 120
VRLGRLFLYSFNDNNSIHPLVEVQRKDTSAILDMKWCHIPVAGHALLGLADASGSIQLLR
Sbjct: 61 VRLGRLFLYSFNDNNSIHPLVEVQRKDTSAILDMKWCHIPVAGHALLGLADASGSIQLLR 120
Query: 121 LVESEKSHVLEPLSSLALEEQCLALSLDWSTGKTGRAGDQPLKIISSDSTGQLHLLMVNE 180
LVESEKSHVLEPLSSLALEEQCLALSLDWSTGKTGRAGDQPLKIISSDSTGQLHLLMVNE
Sbjct: 121 LVESEKSHVLEPLSSLALEEQCLALSLDWSTGKTGRAGDQPLKIISSDSTGQLHLLMVNE 180
Query: 181 TRPRLQKVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTM 240
TRPRLQKVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTM
Sbjct: 181 TRPRLQKVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTM 240
Query: 241 GVCSIQSSPHREHILATGSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLLLA 300
GVCSIQSSPHREHILATGSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLLLA
Sbjct: 241 GVCSIQSSPHREHILATGSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLLLA 300
Query: 301 ACMHSGFKILNCQKAMEERQEATVLTSHTLPDSLVYGADWSWLLFRSLQRAPSWSFPSNL 360
ACMHSGFKILNCQKAMEERQEATVLTSHTLPDSLVYGADWSWLLFRSLQRAPSWSFPSNL
Sbjct: 301 ACMHSGFKILNCQKAMEERQEATVLTSHTLPDSLVYGADWSWLLFRSLQRAPSWSFPSNL 360
Query: 361 GTKTADLKGASELPTPCHECREDNDGEGHARPQSGMKPLTEGMRKNGTWLQATAATTRDC 420
GTKTADLKGASELPTPCHECREDNDGEGHARPQSGMKPLTEGMRKNGTWLQATAATTRDC
Sbjct: 361 GTKTADLKGASELPTPCHECREDNDGEGHARPQSGMKPLTEGMRKNGTWLQATAATTRDC 420
Query: 421 GVNPEEADSAFSLLATCSFYDHALHLWEWEGN 452
GVNPEEADSAFSLLATCSFYDHALHLWEWEGN
Sbjct: 421 GVNPEEADSAFSLLATCSFYDHALHLWEWEGN 452
>gi|4506439 retinoblastoma binding protein 7 [Homo sapiens]
Length = 425
Score = 53.9 bits (128), Expect = 3e-07
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 202 AFNYWHPEIVYSGGDDGLLRGWDTR--VPGKFLFTSKRHTMGVCSIQSSPHREHILATGS 259
A++ H + S DD L WDTR K HT V + +P+ E ILATGS
Sbjct: 233 AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 292
Query: 260 YDEHILLWDTRNMKQPL-ADTPVQGGVWRIKWHPFHHHLLLAACMHSGFKILNCQKAMEE 318
D+ + LWD RN+K L + ++++ W P + +L ++ + + K EE
Sbjct: 293 ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE 352
Query: 319 R 319
+
Sbjct: 353 Q 353
Score = 42.4 bits (98), Expect = 9e-04
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 176 LMVNETRPRLQKVASW--QAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLF 233
LM+ +TR S AH E +FN + I+ +G D + WD R L
Sbjct: 251 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 310
Query: 234 TSKRHTMGVCSIQSSPHREHILATGSYDEHILLWD 268
T + H + + SPH E ILA+ D + +WD
Sbjct: 311 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 345
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 53.5 bits (127), Expect = 4e-07
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 186 QKVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSI 245
Q+ +Q H+ W FN P+++ SG DD ++ W T + S VC +
Sbjct: 504 QRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNS--VASIEAKANVCCV 561
Query: 246 QSSPHREHILATGSYDEHILLWDTRNMKQPL 276
+ SP + LA G D + +D RN KQP+
Sbjct: 562 KFSPSSRYHLAFGCADHCVHYYDLRNTKQPI 592
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 53.5 bits (127), Expect = 4e-07
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 186 QKVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSI 245
Q+ +Q H+ W FN P+++ SG DD ++ W T + S VC +
Sbjct: 480 QRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNS--VASIEAKANVCCV 537
Query: 246 QSSPHREHILATGSYDEHILLWDTRNMKQPL 276
+ SP + LA G D + +D RN KQP+
Sbjct: 538 KFSPSSRYHLAFGCADHCVHYYDLRNTKQPI 568
>gi|58331266 WD repeat domain 59 [Homo sapiens]
Length = 974
Score = 53.5 bits (127), Expect = 4e-07
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 217 DGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLWDTRNMKQPL 276
DG +R WD R P + H + + P EHILAT S D + WD R ++ L
Sbjct: 169 DGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHILATSSQDNSVKFWDYRQPRKYL 228
Query: 277 ADTPVQGGVWRIKWHPFHHHLL 298
P Q VW+ ++ PF + L+
Sbjct: 229 NILPCQVPVWKARYTPFSNGLV 250
Score = 41.2 bits (95), Expect = 0.002
Identities = 42/203 (20%), Positives = 85/203 (41%), Gaps = 20/203 (9%)
Query: 139 EEQCLALSLDWSTGKTGRAGDQPLKIISSDSTGQLHLLMVNETRPRLQKVASWQAHQ-FE 197
+ Q A+S+D +G + L I++ D+ + H + +++ + V W H F
Sbjct: 16 DSQATAMSVDCLGQHAVLSGRRFLYIVNLDAPFEGHRKISRQSKWDIGAV-QWNPHDSFA 74
Query: 198 AWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILAT 257
+ AA + ++ Y D G+ T + HT + + + +L T
Sbjct: 75 HYFAASSNQRVDL-YKWKDGS----------GEVGTTLQGHTRVISDLDWAVFEPDLLVT 123
Query: 258 GSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLLLAACMHSGFKILNCQKAME 317
S D +I +WD ++ ++P G ++KW+ + + L A H G + +
Sbjct: 124 SSVDTYIYIWDIKDTRKPTVALSAVAGASQVKWNKKNANCL--ATSHDG-----DVRIWD 176
Query: 318 ERQEATVLTSHTLPDSLVYGADW 340
+R+ +T + S ++G DW
Sbjct: 177 KRKPSTAVEYLAAHLSKIHGLDW 199
>gi|4507703 tumor suppressing subtransferable candidate 1 [Homo
sapiens]
Length = 387
Score = 53.1 bits (126), Expect = 5e-07
Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 33/164 (20%)
Query: 216 DDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLWDTRNMKQP 275
+D LRGWDTR + H V + +P++++ LA+ D + WDTRN+ +P
Sbjct: 205 NDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEP 264
Query: 276 LADTPVQG-GVWRIKWHPFHHHLLLAACMHSGFKILNC---------------------- 312
+ VW ++++ H L+L S + N
Sbjct: 265 VKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILSNMVSISSEPFGHLVDDDDISDQED 324
Query: 313 ----QKAMEERQEATVLTSHTLPDSLVYGADWS----WLLFRSL 348
+K+ E Q+ + T DS VY DWS W LF SL
Sbjct: 325 HRSEEKSKEPLQDNVIATYEEHEDS-VYAVDWSSADPW-LFASL 366
>gi|237820620 glutamate-rich WD repeat containing 1 [Homo sapiens]
Length = 446
Score = 48.5 bits (114), Expect = 1e-05
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 193 AHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRV--PGKFLFTSKRHTMGVCSIQSSPH 250
AH + + +++ P ++ SGGDDG L+ WD R G + T K+H V S++ P
Sbjct: 306 AHDGDVNVISWSRREPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQ 364
Query: 251 REHILATGSYDEHILLWDTRNMKQP----------LADTP-----VQGGVWRIK---WHP 292
+ A D I WD + P LAD P V G +K WHP
Sbjct: 365 DSGVFAASGADHQITQWDLAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELHWHP 424
Query: 293 FHHHLLLAACMHSGFKI 309
LL++ + SGF I
Sbjct: 425 QCPGLLVSTAL-SGFTI 440
Score = 28.9 bits (63), Expect = 10.0
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 224 DTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLWDTRNMKQPLADTPVQG 283
D + K +F+ H ++ SP L TG ++I LW TP G
Sbjct: 199 DEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLW-----------TPTDG 247
Query: 284 GVWRIKWHPFHHH 296
G W + PF H
Sbjct: 248 GSWHVDQRPFVGH 260
>gi|4505731 peroxisomal biogenesis factor 7 [Homo sapiens]
Length = 323
Score = 47.4 bits (111), Expect = 3e-05
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 146 SLDWSTGKTGRAGDQPLKIISSDSTGQLHLLMVNETRPRLQKVASWQAHQFEAWIAAFNY 205
S+DWS + G+Q + S D T +L V ++ + +++ H+ + ++
Sbjct: 116 SVDWSQTR----GEQLVVSGSWDQTVKLWDPTVGKS------LCTFRGHESIIYSTIWSP 165
Query: 206 WHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHIL 265
P S D LR WD + G + H + S + E++L TG+ D +
Sbjct: 166 HIPGCFASASGDQTLRIWDVKAAGVRIVIPA-HQAEILSCDWCKYNENLLVTGAVDCSLR 224
Query: 266 LWDTRNMKQPLADTPVQG-GVWRIKWHPFHHHLLLAACMH 304
WD RN++QP+ + + R+K+ PFH +LA+C +
Sbjct: 225 GWDLRNVRQPVFELLGHTYAIRRVKFSPFHAS-VLASCSY 263
Score = 42.7 bits (99), Expect = 7e-04
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 193 AHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHRE 252
AHQ E + ++ ++ +G D LRGWD R + +F HT + ++ SP
Sbjct: 196 AHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHA 255
Query: 253 HILATGSYDEHILLWD 268
+LA+ SYD + W+
Sbjct: 256 SVLASCSYDFTVRFWN 271
Score = 40.8 bits (94), Expect = 0.003
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 171 GQLHLLMVNETRPRLQKVASWQAHQFEA-WIAAFNYWHPEIVYSGGDDGLLRGWDTRVPG 229
G L +L +E RL + W F+ W + N H I SG DG L+ WDT
Sbjct: 46 GTLLILDPDEAGLRLFRSFDWNDGLFDVTW--SENNEHVLITCSG--DGSLQLWDTAKAA 101
Query: 230 KFLFTSKRHTMGVCSIQSSPHR-EHILATGSYDEHILLWD 268
L K H V S+ S R E ++ +GS+D+ + LWD
Sbjct: 102 GPLQVYKEHAQEVYSVDWSQTRGEQLVVSGSWDQTVKLWD 141
Score = 34.3 bits (77), Expect = 0.24
Identities = 22/83 (26%), Positives = 35/83 (42%)
Query: 186 QKVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSI 245
Q V H + F+ +H ++ S D +R W+ P L T + HT C +
Sbjct: 233 QPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGL 292
Query: 246 QSSPHREHILATGSYDEHILLWD 268
S +A S+DE I ++D
Sbjct: 293 DFSLQSPTQVADCSWDETIKIYD 315
Score = 31.6 bits (70), Expect = 1.5
Identities = 21/59 (35%), Positives = 26/59 (44%)
Query: 218 GLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLWDTRNMKQPL 276
G L D G LF S G+ + S + EH+L T S D + LWDT PL
Sbjct: 46 GTLLILDPDEAGLRLFRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPL 104
>gi|188219762 denticleless homolog [Homo sapiens]
Length = 730
Score = 47.0 bits (110), Expect = 4e-05
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 132 PLSSLALEEQCLALSLDWSTGKTGRAGDQPLKIISSDSTGQLHLLMV--NETRPRLQKVA 189
PL SL QC S G+TG P S + H+L V E RL
Sbjct: 24 PLQSLLTGYQCSGNDEHTSYGETG-VPVPPFGCTFSSAPNMEHVLAVANEEGFVRLYNTE 82
Query: 190 SWQAHQ--FEAWIAAFNY-----WHP---EIVYSGGDDGLLRGWDTRVPGKFLFTSKRHT 239
S + F+ W+A +N W P ++V + GD + WD + G+ + T K H
Sbjct: 83 SQSFRKKCFKEWMAHWNAVFDLAWVPGELKLVTAAGDQ-TAKFWDVKA-GELIGTCKGHQ 140
Query: 240 MGVCSIQSSPHREHILATGSYDEHILLWDTRNMKQ 274
+ S+ S + + TG D +I++WDTR K+
Sbjct: 141 CSLKSVAFSKFEKAVFCTGGRDGNIMVWDTRCNKK 175
>gi|217330644 WD repeat domain 12 protein [Homo sapiens]
Length = 423
Score = 47.0 bits (110), Expect = 4e-05
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 213 SGGDDGLLRGWDTRVPGKFLFTSK--RHTMGVCSIQSSPHREHILATGSYDEHILLWDTR 270
SG D +R WD R L + HT V S++ SP E L +GS D + LWDTR
Sbjct: 314 SGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWDTR 373
Query: 271 NMKQPLAD 278
+ K PL D
Sbjct: 374 SCKAPLYD 381
Score = 40.8 bits (94), Expect = 0.003
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 25/197 (12%)
Query: 159 DQPLKIISSDSTGQLHLLMVNETRPRLQK-----------VASWQAHQFEAWIAAFNYWH 207
D+ LKI S+ T + + + RPR ++ + + H EA +++ +
Sbjct: 210 DKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHM-EA-VSSVLWSD 267
Query: 208 PEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLW 267
E + S D +R WD G T + + C I SP + LA+GS D HI LW
Sbjct: 268 AEEICSASWDHTIRVWDVE-SGSLKSTLTGNKVFNC-ISYSPLCKR-LASGSTDRHIRLW 324
Query: 268 DTRNMKQPLAD---TPVQGGVWRIKWHPFHHHLLLAACMHSGFKILNCQKAMEERQEATV 324
D R L T G V +KW P H L++ + N K + R
Sbjct: 325 DPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLD------NIVKLWDTRSCKAP 378
Query: 325 LTSHTLPDSLVYGADWS 341
L + V DW+
Sbjct: 379 LYDLAAHEDKVLSVDWT 395
>gi|83779014 katanin p80 subunit B 1 [Homo sapiens]
Length = 655
Score = 44.7 bits (104), Expect = 2e-04
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 209 EIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLWD 268
E++ +G G +R WD K L T H +CS+ P+ E + A+GS D +I LWD
Sbjct: 76 ELIVAGSQSGSIRVWDLEA-AKILRTLMGHKANICSLDFHPYGEFV-ASGSQDTNIKLWD 133
Query: 269 TR 270
R
Sbjct: 134 IR 135
Score = 33.9 bits (76), Expect = 0.31
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 213 SGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLWDTRNM 272
S DD ++ WD GK + HT V ++ P+ E++LA+GS D I WD
Sbjct: 164 SAADDHTVKLWDLTA-GKMMSEFPGHTGPVNVVEFHPN-EYLLASGSSDRTIRFWDLEKF 221
Query: 273 KQPLADTPVQGGVWRIKWHPFHHHLLLAACMHSG 306
+ G V + ++P C++SG
Sbjct: 222 QVVSCIEGEPGPVRSVLFNPD------GCCLYSG 249
>gi|24431950 PRP4 pre-mRNA processing factor 4 homolog [Homo
sapiens]
Length = 522
Score = 44.7 bits (104), Expect = 2e-04
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 186 QKVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSI 245
+++ + H + AF+ + +GG D R WD R G+ + + H + I
Sbjct: 356 EEILHQEGHSMGVYDIAFHQ-DGSLAGTGGLDAFGRVWDLRT-GRCIMFLEGHLKEIYGI 413
Query: 246 QSSPHREHILATGSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLLLAACMHS 305
SP+ HI ATGS D +WD R + Q V +K+ P H + LL +
Sbjct: 414 NFSPNGYHI-ATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDN 472
Query: 306 GFKI 309
KI
Sbjct: 473 TAKI 476
Score = 30.0 bits (66), Expect = 4.5
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 211 VYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLW 267
+ +G D + WD R + ++T H V ++ P + L TG+YD +W
Sbjct: 422 IATGSGDNTCKVWDLR-QRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW 477
>gi|207029439 retinoblastoma binding protein 4 isoform c [Homo
sapiens]
Length = 390
Score = 42.4 bits (98), Expect = 9e-04
Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 190 SWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSP 249
S AH E +FN + I+ +G D + WD R L + + H + +Q SP
Sbjct: 233 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 292
Query: 250 HREHILATGSYDEHILLWDTRNMKQPLADTPVQGG 284
H E ILA+ D + +WD + + + + G
Sbjct: 293 HNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 327
Score = 28.9 bits (63), Expect = 10.0
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 187 KVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRV-------------PGKFLF 233
K+ S+++H+ E + ++ + I+ S G D L WD P + LF
Sbjct: 274 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLF 333
Query: 234 TSKRHTMGVCSIQSSPHREHILATGSYDEHILLW 267
HT + +P+ ++ + S D + +W
Sbjct: 334 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 367
>gi|207029415 retinoblastoma binding protein 4 isoform b [Homo
sapiens]
Length = 424
Score = 42.4 bits (98), Expect = 9e-04
Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 190 SWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSP 249
S AH E +FN + I+ +G D + WD R L + + H + +Q SP
Sbjct: 267 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 326
Query: 250 HREHILATGSYDEHILLWDTRNMKQPLADTPVQGG 284
H E ILA+ D + +WD + + + + G
Sbjct: 327 HNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 361
Score = 28.9 bits (63), Expect = 10.0
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 187 KVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRV-------------PGKFLF 233
K+ S+++H+ E + ++ + I+ S G D L WD P + LF
Sbjct: 308 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLF 367
Query: 234 TSKRHTMGVCSIQSSPHREHILATGSYDEHILLW 267
HT + +P+ ++ + S D + +W
Sbjct: 368 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 401
>gi|5032027 retinoblastoma binding protein 4 isoform a [Homo
sapiens]
Length = 425
Score = 42.4 bits (98), Expect = 9e-04
Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 190 SWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSP 249
S AH E +FN + I+ +G D + WD R L + + H + +Q SP
Sbjct: 268 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
Query: 250 HREHILATGSYDEHILLWDTRNMKQPLADTPVQGG 284
H E ILA+ D + +WD + + + + G
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Score = 28.9 bits (63), Expect = 10.0
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 187 KVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLLRGWDTRV-------------PGKFLF 233
K+ S+++H+ E + ++ + I+ S G D L WD P + LF
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLF 368
Query: 234 TSKRHTMGVCSIQSSPHREHILATGSYDEHILLW 267
HT + +P+ ++ + S D + +W
Sbjct: 369 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>gi|13376840 WD repeat domain 61 [Homo sapiens]
Length = 305
Score = 42.4 bits (98), Expect = 9e-04
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 192 QAHQFEAWIAAFNY---WHPEIVYSGGDDGLLRGWDTRVPGKFL-FTSKRHTMGVCSIQS 247
QAH W A+ + E V +G D L++ W R L ++ + H +GV S+
Sbjct: 13 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 72
Query: 248 SPHREHILATGSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHL 297
S H I A+ S D HI LWD N KQ + W + + P +L
Sbjct: 73 S-HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL 121
Score = 32.7 bits (73), Expect = 0.69
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 213 SGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLWDTRN 271
SG DG++ +D GK L T + H M + S+ SP + +L T S D +I ++D ++
Sbjct: 165 SGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQH 221
>gi|216548382 WD repeat domain 47 isoform 3 [Homo sapiens]
Length = 919
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 200 IAAFNYWHPEIVYSGGDDGLLRGWDTRVPG--KFLFTSKRHT-MGVCSIQSSPHREHILA 256
I A W ++ SG D +R WD RVP + + T+ T V S+ P +LA
Sbjct: 758 ILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGR-LLA 816
Query: 257 TGSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLL 298
TG D +L+D R + + P V +++ P H+LL
Sbjct: 817 TGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLL 858
>gi|216548378 WD repeat domain 47 isoform 1 [Homo sapiens]
Length = 927
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 200 IAAFNYWHPEIVYSGGDDGLLRGWDTRVPG--KFLFTSKRHT-MGVCSIQSSPHREHILA 256
I A W ++ SG D +R WD RVP + + T+ T V S+ P +LA
Sbjct: 766 ILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGR-LLA 824
Query: 257 TGSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLL 298
TG D +L+D R + + P V +++ P H+LL
Sbjct: 825 TGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLL 866
>gi|216548347 WD repeat domain 47 isoform 2 [Homo sapiens]
Length = 920
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 200 IAAFNYWHPEIVYSGGDDGLLRGWDTRVPG--KFLFTSKRHT-MGVCSIQSSPHREHILA 256
I A W ++ SG D +R WD RVP + + T+ T V S+ P +LA
Sbjct: 759 ILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGR-LLA 817
Query: 257 TGSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLL 298
TG D +L+D R + + P V +++ P H+LL
Sbjct: 818 TGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLL 859
>gi|65787364 coronin, actin binding protein, 1B [Homo sapiens]
Length = 489
Score = 40.4 bits (93), Expect = 0.003
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 238 HTMGVCSIQSSPHREHILATGSYDEHILLWD--TRNMKQPLADTPV--QGGVWR---IKW 290
HT V I PH + ++A+GS D +++W + PL + V +G R I W
Sbjct: 81 HTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEGHTKRVGIIAW 140
Query: 291 HPFHHHLLLAACMHSGFKILNCQKAMEERQEATVLTSHTLPDSLVYGADWS 341
HP ++LL+A + I N A E + +L L+Y W+
Sbjct: 141 HPTARNVLLSAGCDNVVLIWNVGTAEE------LYRLDSLHPDLIYNVSWN 185
>gi|14149734 coronin, actin binding protein, 1B [Homo sapiens]
Length = 489
Score = 40.4 bits (93), Expect = 0.003
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 238 HTMGVCSIQSSPHREHILATGSYDEHILLWD--TRNMKQPLADTPV--QGGVWR---IKW 290
HT V I PH + ++A+GS D +++W + PL + V +G R I W
Sbjct: 81 HTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEGHTKRVGIIAW 140
Query: 291 HPFHHHLLLAACMHSGFKILNCQKAMEERQEATVLTSHTLPDSLVYGADWS 341
HP ++LL+A + I N A E + +L L+Y W+
Sbjct: 141 HPTARNVLLSAGCDNVVLIWNVGTAEE------LYRLDSLHPDLIYNVSWN 185
>gi|168229161 coronin 7 [Homo sapiens]
Length = 925
Score = 40.0 bits (92), Expect = 0.004
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 202 AFNYWHPEIVYSGGDDGLLRGWDTRVPGKFL---FTSKR-----HTMGVCSIQSSPHREH 253
A++ + P + G+D +R W RVP + L T+ HT +CS++ P +
Sbjct: 551 AWDPFDPHRLAVAGEDARIRLW--RVPAEGLEEVLTTPETVLTGHTEKICSLRFHPLAAN 608
Query: 254 ILATGSYDEHILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLLLAACMHSGFKILNCQ 313
+LA+ SYD + +WD + L Q ++ + W P L C ++ +
Sbjct: 609 VLASSSYDLTVRIWDLQAGADRLKLQGHQDQIFSLAWSP-DGQQLATVCKDGRVRVYRPR 667
Query: 314 KAMEERQE 321
E QE
Sbjct: 668 SGPEPLQE 675
Score = 32.0 bits (71), Expect = 1.2
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 238 HTMGVCSIQSSPHREHILATGSYDEHILLWDTRNMKQPLADTP--VQG----GVWRIKWH 291
H+ V + SP + +LATGS D + LW Q L P V G V +++H
Sbjct: 76 HSDLVTDLDFSPFDDFLLATGSADRTVKLWRLPGPGQALPSAPGVVLGPEDLPVEVLQFH 135
Query: 292 PFHHHLLLAACMHSGFKILNCQKAMEERQEATVLTSHTLPDSLVYGADWS 341
P +L++A + K+ + K +Q T L +H LV A WS
Sbjct: 136 PTSDGILVSAA-GTTVKVWDAAK----QQPLTELAAH---GDLVQSAVWS 177
>gi|14149696 SEC31 homolog B [Homo sapiens]
Length = 1179
Score = 40.0 bits (92), Expect = 0.004
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 210 IVYSGGDDGLLRGWDTR---VPGK--FLFTSKRHTMGVCSIQSSPHREHILATGSYDEHI 264
++ GGD+G+L ++ GK + ++HT V ++ +P + ++LA+G+ D I
Sbjct: 87 VIVGGGDNGMLILYNVTHILSSGKEPVIAQKQKHTGAVRALDLNPFQGNLLASGASDSEI 146
Query: 265 LLWDTRNMKQPL-----ADTPVQGGVWRIKWHPFHHHLLLAA 301
+WD N+ P+ + P + + + W+ H+L +A
Sbjct: 147 FIWDLNNLNVPMTLGSKSQQPPE-DIKALSWNRQAQHILSSA 187
>gi|13129110 WD repeat domain 77 [Homo sapiens]
Length = 342
Score = 40.0 bits (92), Expect = 0.004
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 13/170 (7%)
Query: 103 GHALLGLADASGSIQL--LRLVESEKSHVLEPLSSLALEEQCLALSLDWSTGKTGRAGDQ 160
G LLG + SG L L + + E S ++ + L W G++
Sbjct: 40 GALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW-------VGER 92
Query: 161 PLKIISSDSTGQLHLLMVNETRPRLQKVASWQAHQFEAWIAAFNYWHPEIVYSGGDDGLL 220
+ + S +L L NET + K ++ + ++ + + SG D +
Sbjct: 93 GILVASDSGAVELWELDENETLI-VSKFCKYEHDDIVSTVSVLSSGTQAV--SGSKDICI 149
Query: 221 RGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLWDTR 270
+ WD L + + H V + +SPH++ + + S D ILLWDTR
Sbjct: 150 KVWDL-AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 198
>gi|62234438 Notchless gene homolog isoform b [Homo sapiens]
Length = 193
Score = 40.0 bits (92), Expect = 0.004
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 208 PEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLW 267
PE + SG DD L W K L H + + SP I+A+ S+D+ I LW
Sbjct: 49 PERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPD-SRIVASASFDKSIKLW 107
Query: 268 DTRNMKQPLADTPVQGGVWRIKWHPFHHHLLLAACMHSGFKILNCQKAMEERQEATVLTS 327
D R K + V++I W LL++ S K+ + ++ ++ A L
Sbjct: 108 DGRTGKYLASLRGHVAAVYQIAWSA-DSRLLVSGSSDSTLKVWD----VKAQKLAMDLPG 162
Query: 328 HTLPDSLVYGADWS 341
H VY DWS
Sbjct: 163 HA---DEVYAVDWS 173
>gi|62234461 Notchless gene homolog isoform a [Homo sapiens]
Length = 485
Score = 40.0 bits (92), Expect = 0.004
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 208 PEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLW 267
PE + SG DD L W K L H + + SP I+A+ S+D+ I LW
Sbjct: 341 PERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPD-SRIVASASFDKSIKLW 399
Query: 268 DTRNMKQPLADTPVQGGVWRIKWHPFHHHLLLAACMHSGFKILNCQKAMEERQEATVLTS 327
D R K + V++I W LL++ S K+ + ++ ++ A L
Sbjct: 400 DGRTGKYLASLRGHVAAVYQIAWSA-DSRLLVSGSSDSTLKVWD----VKAQKLAMDLPG 454
Query: 328 HTLPDSLVYGADWS 341
H VY DWS
Sbjct: 455 HA---DEVYAVDWS 465
Score = 39.3 bits (90), Expect = 0.007
Identities = 55/186 (29%), Positives = 70/186 (37%), Gaps = 35/186 (18%)
Query: 213 SGGDDGLLRGWD--TRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHILLWDTR 270
SG D +R WD T P FT K H V SI SP LA+G + ILLWD
Sbjct: 131 SGSGDTTVRFWDLSTETPH---FTCKGHRHWVLSISWSPDGRK-LASGCKNGQILLWDPS 186
Query: 271 NMKQPLADTPVQGGVW--RIKWHPFHHH----LLLAACMHSGFKILNCQKAMEERQEATV 324
KQ + T W + W P H + + ++ +I + ER +
Sbjct: 187 TGKQ-VGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCER----I 241
Query: 325 LTSHTLP--------DSLVYGAD-------W---SWLLFRSLQRAPSWSFPSNLGTKTAD 366
LT HT D L+Y A W +L R+LQ W L T A
Sbjct: 242 LTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYAL 301
Query: 367 LKGASE 372
GA E
Sbjct: 302 RTGAFE 307
>gi|118402582 cell division cycle 20 [Homo sapiens]
Length = 499
Score = 39.7 bits (91), Expect = 0.006
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 206 WHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDEHIL 265
W+ I+ SG G + D RV + T H+ VC ++ +P H LA+G D +
Sbjct: 276 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVN 334
Query: 266 LWDTRNMK---QPLAD-TPVQGGVWRIKWHPFHHHLL 298
+W + + PL T QG V + W P+ ++L
Sbjct: 335 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 371
>gi|209969680 Fzr1 protein isoform 1 [Homo sapiens]
Length = 496
Score = 39.3 bits (90), Expect = 0.007
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 206 WHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKR---HTMGVCSIQSSPHREHILATGSYDE 262
W+ E + SG D ++ D R P L + +R H VC ++ S + +LA+G D
Sbjct: 279 WNAEQLSSGSRDRMILQRDIRTPP--LQSERRLQGHRQEVCGLKWSTDHQ-LLASGGNDN 335
Query: 263 HILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLL 298
+L+W+ ++ T V I W P H LL
Sbjct: 336 KLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLL 371
Score = 34.7 bits (78), Expect = 0.18
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 8/151 (5%)
Query: 152 GKTGRAGDQPLKIISSDSTGQLHLLMVNETR-PRLQKVASWQAHQFEAWIAAFNYWHPEI 210
G T R G S + +++ + R P LQ Q H+ E ++ H ++
Sbjct: 269 GHTARVGALAWNAEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDH-QL 327
Query: 211 VYSGGDDGLLRGWD-TRVPGKFLFTSKRHTMGVCSIQSSPHREHILAT--GSYDEHILLW 267
+ SGG+D L W+ + + +T H V +I SPH+ +LA+ G+ D I W
Sbjct: 328 LASGGNDNKLLVWNHSSLSPVQQYTE--HLAAVKAIAWSPHQHGLLASGGGTADRCIRFW 385
Query: 268 DTRNMKQPLADTPVQGGVWRIKWHPFHHHLL 298
+T QPL V + W + L+
Sbjct: 386 NTLT-GQPLQCIDTGSQVCNLAWSKHANELV 415
>gi|209969678 Fzr1 protein isoform 3 [Homo sapiens]
Length = 404
Score = 39.3 bits (90), Expect = 0.007
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 206 WHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKR---HTMGVCSIQSSPHREHILATGSYDE 262
W+ E + SG D ++ D R P L + +R H VC ++ S + +LA+G D
Sbjct: 190 WNAEQLSSGSRDRMILQRDIRTPP--LQSERRLQGHRQEVCGLKWSTDHQ-LLASGGNDN 246
Query: 263 HILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLL 298
+L+W+ ++ T V I W P H LL
Sbjct: 247 KLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLL 282
Score = 34.7 bits (78), Expect = 0.18
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 8/151 (5%)
Query: 152 GKTGRAGDQPLKIISSDSTGQLHLLMVNETR-PRLQKVASWQAHQFEAWIAAFNYWHPEI 210
G T R G S + +++ + R P LQ Q H+ E ++ H ++
Sbjct: 180 GHTARVGALAWNAEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDH-QL 238
Query: 211 VYSGGDDGLLRGWD-TRVPGKFLFTSKRHTMGVCSIQSSPHREHILAT--GSYDEHILLW 267
+ SGG+D L W+ + + +T H V +I SPH+ +LA+ G+ D I W
Sbjct: 239 LASGGNDNKLLVWNHSSLSPVQQYTE--HLAAVKAIAWSPHQHGLLASGGGTADRCIRFW 296
Query: 268 DTRNMKQPLADTPVQGGVWRIKWHPFHHHLL 298
+T QPL V + W + L+
Sbjct: 297 NTLT-GQPLQCIDTGSQVCNLAWSKHANELV 326
>gi|33620742 Fzr1 protein isoform 2 [Homo sapiens]
Length = 493
Score = 39.3 bits (90), Expect = 0.007
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 206 WHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKR---HTMGVCSIQSSPHREHILATGSYDE 262
W+ E + SG D ++ D R P L + +R H VC ++ S + +LA+G D
Sbjct: 279 WNAEQLSSGSRDRMILQRDIRTPP--LQSERRLQGHRQEVCGLKWSTDHQ-LLASGGNDN 335
Query: 263 HILLWDTRNMKQPLADTPVQGGVWRIKWHPFHHHLL 298
+L+W+ ++ T V I W P H LL
Sbjct: 336 KLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLL 371
Score = 34.7 bits (78), Expect = 0.18
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 8/151 (5%)
Query: 152 GKTGRAGDQPLKIISSDSTGQLHLLMVNETR-PRLQKVASWQAHQFEAWIAAFNYWHPEI 210
G T R G S + +++ + R P LQ Q H+ E ++ H ++
Sbjct: 269 GHTARVGALAWNAEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDH-QL 327
Query: 211 VYSGGDDGLLRGWD-TRVPGKFLFTSKRHTMGVCSIQSSPHREHILAT--GSYDEHILLW 267
+ SGG+D L W+ + + +T H V +I SPH+ +LA+ G+ D I W
Sbjct: 328 LASGGNDNKLLVWNHSSLSPVQQYTE--HLAAVKAIAWSPHQHGLLASGGGTADRCIRFW 385
Query: 268 DTRNMKQPLADTPVQGGVWRIKWHPFHHHLL 298
+T QPL V + W + L+
Sbjct: 386 NTLT-GQPLQCIDTGSQVCNLAWSKHANELV 415
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,240,030
Number of Sequences: 37866
Number of extensions: 889811
Number of successful extensions: 2842
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 2558
Number of HSP's gapped (non-prelim): 357
length of query: 452
length of database: 18,247,518
effective HSP length: 106
effective length of query: 346
effective length of database: 14,233,722
effective search space: 4924867812
effective search space used: 4924867812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.