Search of human proteins with 24307901

Search of human proteins with 24307901

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24307901 interferon-induced protein 35 [Homo sapiens]
         (288 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24307901 interferon-induced protein 35 [Homo sapiens]              568   e-162
gi|188219599 N-myc and STAT interactor [Homo sapiens]                 109   2e-24
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...    35   0.058
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...    35   0.058
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...    35   0.100
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...    33   0.38 
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...    33   0.38 
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...    31   1.1  
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...    31   1.1  
gi|61966919 hypothetical protein LOC442444 [Homo sapiens]              31   1.4  
gi|217330559 unc-51-like kinase 2 [Homo sapiens]                       30   2.5  
gi|217330557 unc-51-like kinase 2 [Homo sapiens]                       30   2.5  
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...    30   2.5  
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform...    30   2.5  
gi|25952099 calcium-activated potassium channel beta 3 subunit i...    30   3.2  
gi|47086907 lysophosphatidylcholine acyltransferase 2 [Homo sapi...    30   3.2  
gi|239755967 PREDICTED: similar to CNOT4 protein, partial [Homo ...    29   5.5  
gi|194578923 sperm associated antigen 9 isoform 1 [Homo sapiens]       29   5.5  
gi|27436920 sperm associated antigen 9 isoform 3 [Homo sapiens]        29   5.5  
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]       28   7.2  
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo...    28   7.2  
gi|239750488 PREDICTED: similar to CNOT4 protein, partial [Homo ...    28   7.2  
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]       28   7.2  
gi|239744787 PREDICTED: similar to CNOT4 protein, partial [Homo ...    28   7.2  
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...    28   7.2  
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...    28   7.2  
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...    28   7.2  
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...    28   7.2  
gi|226437592 transmembrane protein 114 [Homo sapiens]                  28   7.2  
gi|154091020 leucine-rich repeats and calponin homology (CH) dom...    28   9.3  

>gi|24307901 interferon-induced protein 35 [Homo sapiens]
          Length = 288

 Score =  568 bits (1463), Expect = e-162
 Identities = 288/288 (100%), Positives = 288/288 (100%)

Query: 1   MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP 60
           MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
Sbjct: 1   MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP 60

Query: 61  EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM 120
           EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
Sbjct: 61  EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM 120

Query: 121 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS 180
           VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
Sbjct: 121 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS 180

Query: 181 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI 240
           VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
Sbjct: 181 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI 240

Query: 241 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG 288
           PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
Sbjct: 241 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG 288


>gi|188219599 N-myc and STAT interactor [Homo sapiens]
          Length = 307

 Score =  109 bits (273), Expect = 2e-24
 Identities = 78/268 (29%), Positives = 143/268 (53%), Gaps = 14/268 (5%)

Query: 25  DLQQLRKELGDSPKD-KVPFSVPKIPLVFRGHTQQDPEVPKSLVS-----NLRIHCPLLA 78
           ++Q+L  EL ++ K+ ++   +P+  + F      + +   S +S     + ++   +  
Sbjct: 43  EIQKLETELQEATKEFQIKEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQK 102

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSGRRVL 138
           G ALITF+  +VA+ V+   +H + +++  L V  +P+ L      QV V  ++S  ++ 
Sbjct: 103 GQALITFEKEEVAQNVVSMSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYV--EVSKMKIN 160

Query: 139 VTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVD--VRELLPGSVMLGFARDGVAQRLCQ 196
           VT  P +LR  E+++ DKLE+ F K+RNGGG+VD    +   GS ++ F   GVA ++ +
Sbjct: 161 VTEIPDTLR--EDQMRDKLELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILK 218

Query: 197 IGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEI 255
             ++ + +      + VSPY    ++K +I S    R+VL+  +  I +D   + D++ I
Sbjct: 219 KKEYPLYINQTCHRVTVSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINI 278

Query: 256 HFQKPTRGGGEVEALTVVPQGQQGLAVF 283
           HFQ+   GGGEV+ +     GQ  +A F
Sbjct: 279 HFQRAKNGGGEVDVVK-CSLGQPHIAYF 305



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 2/110 (1%)

Query: 175 ELLPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRS 234
           E+  G  ++ F ++ VAQ +  + +  V +    + +   P       + ++  +     
Sbjct: 99  EIQKGQALITFEKEEVAQNVVSMSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMK 158

Query: 235 VLVLNIPDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFT 284
           + V  IPD L   ++ D LE+ F K   GGGEV+ +      Q G AV T
Sbjct: 159 INVTEIPDTLREDQMRDKLELSFSKSRNGGGEVDRVDY--DRQSGSAVIT 206


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPMVTTIQ 125
           G A +TFDD    ++++ QK HT+N   C +R  +   E+   ++ Q
Sbjct: 147 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score = 35.4 bits (80), Expect = 0.058
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPMVTTIQ 125
           G A +TFDD    ++++ QK HT+N   C +R  +   E+   ++ Q
Sbjct: 147 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score = 34.7 bits (78), Expect = 0.100
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLEL 118
           G A +TFDD    ++++ QK HTIN   C ++  +   E+
Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 207


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPMVTTIQ 125
           G A +TFDD    ++++ QK HT+    C +R  +   E+   ++ Q
Sbjct: 147 GFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQ 193


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPMVTTIQ 125
           G A +TFDD    ++++ QK HT+    C +R  +   E+   ++ Q
Sbjct: 147 GFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQ 193


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLEL 118
           G   ITF + +  ++VL++K HT++  +C ++V  QP E+
Sbjct: 196 GFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKV-AQPKEV 234


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLEL 118
           G   ITF + +  ++VL++K HT++  +C ++V  QP E+
Sbjct: 196 GFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKV-AQPKEV 234


>gi|61966919 hypothetical protein LOC442444 [Homo sapiens]
          Length = 1035

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 9/74 (12%)

Query: 22  RLWDLQQLRKELGDS------PKDKVPFSVPKIPLVFRGHTQQDPEVPKSLVSNLRIHCP 75
           R+  L+QL  E G S      PK +VP   P+ P    G +   PE PK+ +SNLR   P
Sbjct: 362 RVSPLRQLPPEAGVSHLCPEPPKTRVPPLRPETPK--NGVSPLFPEPPKTRISNLRSEPP 419

Query: 76  LLAGSALITFDDPK 89
            + G + +  + PK
Sbjct: 420 KI-GVSHLCLEPPK 432


>gi|217330559 unc-51-like kinase 2 [Homo sapiens]
          Length = 1036

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 75  PLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSG 134
           P L G  LITF+ P++ E+ L ++EHT  +    + +        M T   + +++   G
Sbjct: 800 PSLEG--LITFEAPELPEETLMEREHTDTLRHLNVML--------MFTECVLDLTAMRGG 849

Query: 135 RRVLVTGFPASLRLSEEELLDKL 157
              L T   +  ++ E  ++D++
Sbjct: 850 NPELCTSAVSLYQIQESVVVDQI 872


>gi|217330557 unc-51-like kinase 2 [Homo sapiens]
          Length = 1036

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 75  PLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSG 134
           P L G  LITF+ P++ E+ L ++EHT  +    + +        M T   + +++   G
Sbjct: 800 PSLEG--LITFEAPELPEETLMEREHTDTLRHLNVML--------MFTECVLDLTAMRGG 849

Query: 135 RRVLVTGFPASLRLSEEELLDKL 157
              L T   +  ++ E  ++D++
Sbjct: 850 NPELCTSAVSLYQIQESVVVDQI 872


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPMV 121
           G   +TFDD    ++++ QK HTIN     +R  +   E+  V
Sbjct: 154 GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEV 196


>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
           [Homo sapiens]
          Length = 341

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPMV 121
           G   +TFDD    ++++ QK HTIN     +R  +   E+  V
Sbjct: 142 GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEV 184


>gi|25952099 calcium-activated potassium channel beta 3 subunit
           isoform a [Homo sapiens]
          Length = 277

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 24/83 (28%)

Query: 113 VQPLELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVD 172
           +QP  +P+  T+Q       S RR   T FPAS +  E +  D            G  +D
Sbjct: 1   MQPFSIPVQITLQG------SRRRQGRTAFPASGKKRETDYSD------------GDPLD 42

Query: 173 VRELLPGS------VMLGFARDG 189
           V + LP S      VMLGFA  G
Sbjct: 43  VHKRLPSSAGEDRAVMLGFAMMG 65


>gi|47086907 lysophosphatidylcholine acyltransferase 2 [Homo
           sapiens]
          Length = 544

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 27/108 (25%)

Query: 99  EHTINMEECRLRVQVQPLELPMVTTI-----------------------QVMVSSQLSGR 135
           +HT   E+CRL +    L LPM   +                          ++S   G 
Sbjct: 320 DHTY--EDCRLMISAGQLTLPMEAGLVEFTKISRKLKLDWDGVRKHLDEYASIASSSKGG 377

Query: 136 RVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGSVML 183
           R+ +  F   L+L   ++L +L   F   RN  G +D RE + G  +L
Sbjct: 378 RIGIEEFAKYLKLPVSDVLRQLFALF--DRNHDGSIDFREYVIGLAVL 423


>gi|239755967 PREDICTED: similar to CNOT4 protein, partial [Homo
           sapiens]
          Length = 318

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 9   LHALQEEQARLKMRLWDLQQLRKELGD--SPKDKVPFSVPKIPLVFRGHTQQDPEVPKSL 66
           LH       R K+++  LQ       D  SP   +P S P IP+   GH++Q P      
Sbjct: 135 LHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPSTGLPKSSPVIPVRSSGHSEQLPSEGAG- 193

Query: 67  VSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQP 115
                      A S L+  D+P + + +L Q   T+ ++        QP
Sbjct: 194 -----------AESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQP 231


>gi|194578923 sperm associated antigen 9 isoform 1 [Homo sapiens]
          Length = 1321

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 113 VQP---LELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGG 169
           VQP   L+   V    V+  + + G R   T +PA   LSE   +DK  +    T N   
Sbjct: 776 VQPGNILDSFTVCNSHVLCIASVPGARE--TDYPAGEDLSESGQVDKASLCGSMTSNSSA 833

Query: 170 DVDVRELLPGSVMLGFARDGV 190
           + D   LL G  ++G + +GV
Sbjct: 834 ETD--SLLGGITVVGCSAEGV 852


>gi|27436920 sperm associated antigen 9 isoform 3 [Homo sapiens]
          Length = 1307

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 113 VQP---LELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGG 169
           VQP   L+   V    V+  + + G R   T +PA   LSE   +DK  +    T N   
Sbjct: 762 VQPGNILDSFTVCNSHVLCIASVPGARE--TDYPAGEDLSESGQVDKASLCGSMTSNSSA 819

Query: 170 DVDVRELLPGSVMLGFARDGV 190
           + D   LL G  ++G + +GV
Sbjct: 820 ETD--SLLGGITVVGCSAEGV 838


>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
          Length = 223

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 132 LSGRRVLVTGFPASLR-----LSEEELLDKLEIFFGKTRNGGGDVDVRELLPGSVMLGFA 186
           L+G  V +    A+ R     L E+ LLD+++I FG +   G    + ELL G+  L  A
Sbjct: 151 LAGISVYIAYSAAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 210

Query: 187 RD 188
           R+
Sbjct: 211 RE 212


>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
           sapiens]
          Length = 217

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 132 LSGRRVLVTGFPASLR-----LSEEELLDKLEIFFGKTRNGGGDVDVRELLPGSVMLGFA 186
           L+G  V +    A+ R     L E+ LLD+++I FG +   G    + ELL G+  L  A
Sbjct: 145 LAGISVYIAYSAAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204

Query: 187 RD 188
           R+
Sbjct: 205 RE 206


>gi|239750488 PREDICTED: similar to CNOT4 protein, partial [Homo
           sapiens]
          Length = 318

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 9   LHALQEEQARLKMRLWDLQQLRKELGD--SPKDKVPFSVPKIPLVFRGHTQQDPEVPKSL 66
           LH       R K+++  LQ       D  SP   +P S P IP+   GH++Q P      
Sbjct: 135 LHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAG- 193

Query: 67  VSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQP 115
                      A S L+  D+P + + +L Q   T+ ++        QP
Sbjct: 194 -----------AESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQP 231


>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
          Length = 122

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 132 LSGRRVLVTGFPASLR-----LSEEELLDKLEIFFGKTRNGGGDVDVRELLPGSVMLGFA 186
           L+G  V +    A+ R     L E+ LLD+++I FG +   G    + ELL G+  L  A
Sbjct: 50  LAGISVYIAYSAAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109

Query: 187 RD 188
           R+
Sbjct: 110 RE 111


>gi|239744787 PREDICTED: similar to CNOT4 protein, partial [Homo
           sapiens]
          Length = 318

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 9   LHALQEEQARLKMRLWDLQQLRKELGD--SPKDKVPFSVPKIPLVFRGHTQQDPEVPKSL 66
           LH       R K+++  LQ       D  SP   +P S P IP+   GH++Q P      
Sbjct: 135 LHLSMGLDDRNKIQMIPLQSPTTSNRDRPSPPTGLPKSSPVIPVRSSGHSEQLPSEGAG- 193

Query: 67  VSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQP 115
                      A S L+  D+P + + +L Q   T+ ++        QP
Sbjct: 194 -----------AESQLLFLDNPALPKHLLHQSLGTVILKPLDFGFSQQP 231


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 8/33 (24%), Positives = 21/33 (63%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRV 111
           G   ITF + +  ++++++K H + + +C ++V
Sbjct: 224 GFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 256


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 8/33 (24%), Positives = 21/33 (63%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRV 111
           G   ITF + +  ++++++K H + + +C ++V
Sbjct: 224 GFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 256


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 8/33 (24%), Positives = 21/33 (63%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRV 111
           G   ITF + +  ++++++K H + + +C ++V
Sbjct: 205 GFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 237


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 8/33 (24%), Positives = 21/33 (63%)

Query: 79  GSALITFDDPKVAEQVLQQKEHTINMEECRLRV 111
           G   ITF + +  ++++++K H + + +C ++V
Sbjct: 205 GFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 237


>gi|226437592 transmembrane protein 114 [Homo sapiens]
          Length = 223

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 132 LSGRRVLVTGFPASLR-----LSEEELLDKLEIFFGKTRNGGGDVDVRELLPGSVMLGFA 186
           L+G  V +    A+ R     L E+ LLD+++I FG +   G    + ELL G+  L  A
Sbjct: 151 LAGISVYIAYSAAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 210

Query: 187 RD 188
           R+
Sbjct: 211 RE 212


>gi|154091020 leucine-rich repeats and calponin homology (CH) domain
           containing 2 [Homo sapiens]
          Length = 765

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 7/48 (14%)

Query: 9   LHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFS---VPKIPLVFR 53
           LH+L+E    L +R  +L  L  ELGD P  K+ FS   V +IP+ +R
Sbjct: 224 LHSLRE----LNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYR 267


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,223,330
Number of Sequences: 37866
Number of extensions: 519071
Number of successful extensions: 1296
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 36
length of query: 288
length of database: 18,247,518
effective HSP length: 101
effective length of query: 187
effective length of database: 14,423,052
effective search space: 2697110724
effective search space used: 2697110724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.