Guide to the Human Genome
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Name: IFI35 Sequence: fasta or formatted (288aa) NCBI GI: 24307901
Description:

interferon-induced protein 35

Referenced in:

Interferon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         14           2
 C cysteine            1.0          3           1
 D aspartate           4.9         14           2
 E glutamate           7.3         21           3
 F phenylalanine       3.5         10           2
 G glycine             8.0         23           3
 H histidine           2.1          6           1
 I isoleucine          4.2         12           1
 K lysine              4.2         12           1
 L leucine            13.2         38           2
 M methionine          2.1          6           1
 N asparagine          1.7          5           1
 P proline             7.6         22           1
 Q glutamine           8.3         24           2
 R arginine            6.2         18           2
 S serine              5.9         17           2
 T threonine           3.8         11           2
 V valine             10.4         30           2
 W tryptophan          0.3          1           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon-induced protein 35 
NMI                   0.155   N-myc and STAT interactor 
HNRNPA1               0.018   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA1               0.018   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
HNRNPA3               0.018   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA1L2             0.015   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.015   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPAB               0.011   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPAB               0.011   heterogeneous nuclear ribonucleoprotein A/B isoform ...
FAM47C                0.011   hypothetical protein LOC442444 
ULK2                  0.009   unc-51-like kinase 2 
ULK2                  0.009   unc-51-like kinase 2 
HNRNPA2B1             0.009   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.009   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
KCNMB3                0.009   calcium-activated potassium channel beta 3 subunit i...
LPCAT2                0.009   lysophosphatidylcholine acyltransferase 2 
LOC100130563          0.007   PREDICTED: similar to CNOT4 protein, partial 
SPAG9                 0.007   sperm associated antigen 9 isoform 1 
SPAG9                 0.007   sperm associated antigen 9 isoform 3 
TMEM114               0.006   PREDICTED: transmembrane protein 114 
TMEM114               0.006   PREDICTED: transmembrane protein 114, partial [Homo...
LOC100130563          0.006   PREDICTED: similar to CNOT4 protein, partial 
TMEM114               0.006   PREDICTED: transmembrane protein 114 
LOC100130563          0.006   PREDICTED: similar to CNOT4 protein, partial 
HNRNPD                0.006   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.006   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPD                0.006   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.006   heterogeneous nuclear ribonucleoprotein D isoform d ...
TMEM114               0.006   transmembrane protein 114 
LRCH2                 0.006   leucine-rich repeats and calponin homology (CH) dom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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