Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DYNC1I2 Sequence: fasta or formatted (638aa) NCBI GI: 24307879
Description:

dynein, cytoplasmic 1, intermediate chain 2

Referenced in:

Dynein and Dynactin
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         47           3
 C cysteine            1.1          7           1
 D aspartate           6.4         41           3
 E glutamate           9.7         62           3
 F phenylalanine       3.3         21           2
 G glycine             5.3         34           2
 H histidine           3.3         21           1
 I isoleucine          3.9         25           1
 K lysine              6.3         40           3
 L leucine             6.3         40           2
 M methionine          2.0         13           1
 N asparagine          4.1         26           3
 P proline             6.0         38           3
 Q glutamine           3.9         25           2
 R arginine            4.5         29           2
 S serine              8.9         57           2
 T threonine           5.5         35           2
 V valine              7.8         50           2
 W tryptophan          2.0         13           1
 Y tyrosine            2.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dynein, cytoplasmic 1, intermediate chain 2 
DYNC1I1               0.771   dynein, cytoplasmic 1, intermediate chain 1 isoform a...
DYNC1I1               0.770   dynein, cytoplasmic 1, intermediate chain 1 isoform...
DYNC1I1               0.737   dynein, cytoplasmic 1, intermediate chain 1 isoform...
WDR78                 0.082   WD repeat domain 78 isoform 1 
DNAI1                 0.065   dynein, axonemal, intermediate chain 1 
WDR34                 0.062   WD repeat domain 34 
DNAI2                 0.061   dynein, axonemal, intermediate polypeptide 2 
WDR60                 0.031   WD repeat domain 60 
RBBP4                 0.024   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.024   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.024   retinoblastoma binding protein 4 isoform a 
RBBP7                 0.024   retinoblastoma binding protein 7 
PRKCSH                0.024   protein kinase C substrate 80K-H isoform 1 
WDR63                 0.024   WD repeat domain 63 
PRKCSH                0.023   protein kinase C substrate 80K-H isoform 2 
SRCAP                 0.021   Snf2-related CBP activator protein 
NEFH                  0.020   neurofilament, heavy polypeptide 200kDa 
PEX7                  0.019   peroxisomal biogenesis factor 7 
SEC31A                0.019   SEC31 homolog A isoform 3 
SEC31A                0.019   SEC31 homolog A isoform 1 
SEC31A                0.019   SEC31 homolog A isoform 4 
SEC31A                0.019   SEC31 homolog A isoform 2 
SEC31A                0.019   SEC31 homolog A isoform 1 
CDC2L2                0.017   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.017   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.017   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.017   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.017   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.017   cell division cycle 2-like 1 (PITSLRE proteins) isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press