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Search of human proteins with 24234760
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens]
(78 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens] 167 1e-42
gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens] 167 1e-42
gi|157738682 CSAG family, member 2 isoform 2 [Homo sapiens] 140 2e-34
gi|193788726 CSAG family, member 3 isoform b [Homo sapiens] 140 2e-34
gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo s... 139 6e-34
gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo s... 139 6e-34
gi|239757940 PREDICTED: similar to CSAG family, member 2 [Homo s... 136 3e-33
gi|157502216 CSAG family, member 2 isoform 1 [Homo sapiens] 129 4e-31
gi|193788718 CSAG family, member 3 isoform a [Homo sapiens] 129 4e-31
gi|116812624 tau tubulin kinase 2 [Homo sapiens] 30 0.32
gi|14149696 SEC31 homolog B [Homo sapiens] 29 0.71
gi|194018495 zinc finger protein 324B [Homo sapiens] 28 1.2
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 28 2.1
gi|148806891 hypothetical protein LOC54906 [Homo sapiens] 28 2.1
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 27 2.7
gi|33620755 YEATS domain containing 2 [Homo sapiens] 27 2.7
gi|31543179 hypothetical protein LOC78995 [Homo sapiens] 27 4.6
gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens] 27 4.6
gi|189217853 matrix metalloproteinase 2 isoform b [Homo sapiens] 26 6.0
gi|11342666 matrix metalloproteinase 2 isoform a preproprotein [... 26 6.0
gi|18129690 T-box 4 [Homo sapiens] 26 6.0
gi|239757572 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|239754748 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|239752082 PREDICTED: hypothetical protein XP_002348102 [Homo ... 26 6.0
gi|239746579 PREDICTED: hypothetical protein XP_002343785 [Homo ... 26 6.0
gi|157311635 FAM83H [Homo sapiens] 26 6.0
gi|209571542 connexin 43-interacting protein 150 isoform b [Homo... 26 6.0
gi|75832029 connexin 43-interacting protein 150 isoform a [Homo ... 26 6.0
gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo ... 26 7.9
gi|118498364 dapper 1 isoform 2 [Homo sapiens] 26 7.9
>gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens]
Length = 78
Score = 167 bits (424), Expect = 1e-42
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ 60
MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ
Sbjct: 1 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ 60
Query: 61 PKREKGPVKEVPGTKGSP 78
PKREKGPVKEVPGTKGSP
Sbjct: 61 PKREKGPVKEVPGTKGSP 78
>gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens]
Length = 78
Score = 167 bits (424), Expect = 1e-42
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ 60
MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ
Sbjct: 1 MSATTACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQ 60
Query: 61 PKREKGPVKEVPGTKGSP 78
PKREKGPVKEVPGTKGSP
Sbjct: 61 PKREKGPVKEVPGTKGSP 78
>gi|157738682 CSAG family, member 2 isoform 2 [Homo sapiens]
Length = 110
Score = 140 bits (353), Expect = 2e-34
Identities = 65/73 (89%), Positives = 66/73 (90%)
Query: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREK 65
ACWPAFTVLGEA DQVDWSRL RD GLVKMSRKPRASSP SNNHP TPKRFPRQP REK
Sbjct: 38 ACWPAFTVLGEAWRDQVDWSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREK 97
Query: 66 GPVKEVPGTKGSP 78
GP+KEVPGTKGSP
Sbjct: 98 GPIKEVPGTKGSP 110
>gi|193788726 CSAG family, member 3 isoform b [Homo sapiens]
Length = 110
Score = 140 bits (353), Expect = 2e-34
Identities = 65/73 (89%), Positives = 66/73 (90%)
Query: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREK 65
ACWPAFTVLGEA DQVDWSRL RD GLVKMSRKPRASSP SNNHP TPKRFPRQP REK
Sbjct: 38 ACWPAFTVLGEAWRDQVDWSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREK 97
Query: 66 GPVKEVPGTKGSP 78
GP+KEVPGTKGSP
Sbjct: 98 GPIKEVPGTKGSP 110
>gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 139 bits (349), Expect = 6e-34
Identities = 65/73 (89%), Positives = 66/73 (90%)
Query: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREK 65
ACWPAFTVLGEA DQVDWSRL RDTGLVKMSRKPRASSP SNNHP TPKR PRQP RE+
Sbjct: 38 ACWPAFTVLGEAWRDQVDWSRLLRDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGREQ 97
Query: 66 GPVKEVPGTKGSP 78
GPVKEVPGTKGSP
Sbjct: 98 GPVKEVPGTKGSP 110
>gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 139 bits (349), Expect = 6e-34
Identities = 65/73 (89%), Positives = 66/73 (90%)
Query: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREK 65
ACWPAFTVLGEA DQVDWSRL RDTGLVKMSRKPRASSP SNNHP TPKR PRQP RE+
Sbjct: 38 ACWPAFTVLGEAWRDQVDWSRLLRDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGREQ 97
Query: 66 GPVKEVPGTKGSP 78
GPVKEVPGTKGSP
Sbjct: 98 GPVKEVPGTKGSP 110
>gi|239757940 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 136 bits (343), Expect = 3e-33
Identities = 64/73 (87%), Positives = 65/73 (89%)
Query: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREK 65
ACWPAFTVLGEA DQVDWSRL RDTGLVKMSRKPRASSP SNNHP TPKR PRQP E+
Sbjct: 38 ACWPAFTVLGEAWRDQVDWSRLLRDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQ 97
Query: 66 GPVKEVPGTKGSP 78
GPVKEVPGTKGSP
Sbjct: 98 GPVKEVPGTKGSP 110
>gi|157502216 CSAG family, member 2 isoform 1 [Homo sapiens]
Length = 127
Score = 129 bits (325), Expect = 4e-31
Identities = 65/90 (72%), Positives = 66/90 (73%), Gaps = 17/90 (18%)
Query: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKR--------- 56
ACWPAFTVLGEA DQVDWSRL RD GLVKMSRKPRASSP SNNHP TPKR
Sbjct: 38 ACWPAFTVLGEAWRDQVDWSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLN 97
Query: 57 --------FPRQPKREKGPVKEVPGTKGSP 78
FPRQP REKGP+KEVPGTKGSP
Sbjct: 98 PGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
>gi|193788718 CSAG family, member 3 isoform a [Homo sapiens]
Length = 127
Score = 129 bits (325), Expect = 4e-31
Identities = 65/90 (72%), Positives = 66/90 (73%), Gaps = 17/90 (18%)
Query: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKR--------- 56
ACWPAFTVLGEA DQVDWSRL RD GLVKMSRKPRASSP SNNHP TPKR
Sbjct: 38 ACWPAFTVLGEAWRDQVDWSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLN 97
Query: 57 --------FPRQPKREKGPVKEVPGTKGSP 78
FPRQP REKGP+KEVPGTKGSP
Sbjct: 98 PGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
>gi|116812624 tau tubulin kinase 2 [Homo sapiens]
Length = 1244
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 11 FTVLGEARGDQVDWSRLYRDTGLVKMSRKPRAS----SPFSNNHPSTPKRFPRQPKR 63
+ VLG + D +SRL + L S+KPR++ SP S ++P TP + P P+R
Sbjct: 1095 YKVLGSSNSDSDLFSRLAQI--LQNGSQKPRSTTQCKSPGSPHNPKTPPKSPVVPRR 1149
>gi|14149696 SEC31 homolog B [Homo sapiens]
Length = 1179
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 40 PRASSPFSNNHPSTPKRFPRQPKREKGPVKEVPGTKGSP 78
P P S + P TP+ FP P R GP + V T P
Sbjct: 920 PGIMRPGSTSLPETPRLFPLLPLRPLGPGRMVSHTPAPP 958
>gi|194018495 zinc finger protein 324B [Homo sapiens]
Length = 544
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 38 RKPRASSPFSNNHPS--TPKRFPRQPKREKGPVKEVPG 73
R P++S P P R PR P+R+K +EVPG
Sbjct: 167 RPPKSSRPREKTFTEYRVPGRQPRTPERQKPCAQEVPG 204
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 12 TVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHP-----STPKRFPRQPKREKG 66
T+LG Q++ +L DT + A+ P + +HP S+P + P Q + KG
Sbjct: 316 TLLGALARRQLNLGQLLEDTESYLQAFLAGAAGPLNGDHPGPGQSSSPDQAPPQLSKSKG 375
Query: 67 PVKEVPG 73
K G
Sbjct: 376 LPKSAWG 382
>gi|148806891 hypothetical protein LOC54906 [Homo sapiens]
Length = 2430
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 18 RGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREKGPVKEVPGTK 75
RG +V ++ + T K+ RK + +P S + P P R K+EK PVK VP K
Sbjct: 401 RGAEVLTAQFVQKT---KLDRKNQ-EAPISKDVP-VPTNAKRARKQEKSPVKTVPRAK 453
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 13 VLGEARGDQVDW-SRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFP-----RQPKREKG 66
+L + +Q W SRL + K+ +KP A PF+ + P T + R+P R+
Sbjct: 1329 LLANSTEEQQKWVSRLVK-----KIPKKPPAPDPFARSSPRTSMKIQQNQSIRRPSRQLA 1383
Query: 67 PVK 69
P K
Sbjct: 1384 PNK 1386
>gi|33620755 YEATS domain containing 2 [Homo sapiens]
Length = 1422
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 28 YRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREKGPVKE 70
Y GL+K+S + NHP+ K+F P R P +
Sbjct: 87 YASAGLLKVSEGSKTCDTMVFNHPAI-KKFLESPSRSSSPANQ 128
>gi|31543179 hypothetical protein LOC78995 [Homo sapiens]
Length = 647
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 40 PRASSPFSNNHPSTPKR-----FPRQPKREKGPVKEVPGTKGSP 78
PR +P N+ STP R FPR P + + PV + G+P
Sbjct: 315 PRPRTP--NSSCSTPSRTSSGLFPRIPLQPQAPVSSIGSPVGTP 356
>gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens]
Length = 445
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 32 GLVKMSRKPRASSPFSNNHPSTPKRFPR-QPKREKGPVKEVPGTKGSP 78
GL S P S+P S++ PS +R PR +P E P SP
Sbjct: 133 GLAAASCSPPRSAPSSDSSPSFVRRHPRAEPHSEDDSRDASPPEPASP 180
>gi|189217853 matrix metalloproteinase 2 isoform b [Homo sapiens]
Length = 610
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 30 DTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREKGPV 68
D ++ RKPR +P N+ FPR+PK +K +
Sbjct: 40 DQNTIETMRKPRCGNPDVANY----NFFPRKPKWDKNQI 74
>gi|11342666 matrix metalloproteinase 2 isoform a preproprotein
[Homo sapiens]
Length = 660
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 30 DTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREKGPV 68
D ++ RKPR +P N+ FPR+PK +K +
Sbjct: 90 DQNTIETMRKPRCGNPDVANY----NFFPRKPKWDKNQI 124
>gi|18129690 T-box 4 [Homo sapiens]
Length = 545
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 31 TGLVKMSRKP----RASSPFSNNHPSTPKRFPRQPKREKGPVKEVPGTKGSP 78
T M R P ++S P N H S + + RE+GP P +G P
Sbjct: 447 TATTMMPRLPTLSAQSSQPPGNAHFSVYNQLSQSQVRERGPSASFPRERGLP 498
>gi|239757572 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 1 MSATTACWPAFTV-LGEARGDQVDWSRLYRDTGLVKMS--RKPRASSPFSNNHPSTPKRF 57
M+ TACW L RG R TG KM R PR+ SP N H ++
Sbjct: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
Query: 58 PR 59
R
Sbjct: 61 KR 62
>gi|239754748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 33 LVKMSRKPRASSPFSNNHPSTPKRFPRQPKREKGPVKEVP 72
L + +PR+ S + P + +R P + +R GP K P
Sbjct: 98 LPTLGTQPRSPSTGPDRVPRSSRRLPPESRRPGGPAKTHP 137
>gi|239752082 PREDICTED: hypothetical protein XP_002348102 [Homo
sapiens]
Length = 97
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 1 MSATTACWPAFTV-LGEARGDQVDWSRLYRDTGLVKMS--RKPRASSPFSNNHPSTPKRF 57
M+ TACW L RG R TG KM R PR+ SP N H ++
Sbjct: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
Query: 58 PR 59
R
Sbjct: 61 KR 62
>gi|239746579 PREDICTED: hypothetical protein XP_002343785 [Homo
sapiens]
Length = 97
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 1 MSATTACWPAFTV-LGEARGDQVDWSRLYRDTGLVKMS--RKPRASSPFSNNHPSTPKRF 57
M+ TACW L RG R TG KM R PR+ SP N H ++
Sbjct: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
Query: 58 PR 59
R
Sbjct: 61 KR 62
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 31 TGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREKGPVKEVPGTKGS 77
TG ++ P ++ P P P P+R PV VP +GS
Sbjct: 895 TGFIEQKGSPTSAYPERRGSPVPPV-----PERRSSPVPPVPERRGS 936
>gi|209571542 connexin 43-interacting protein 150 isoform b [Homo
sapiens]
Length = 1086
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 26 RLYRDTGLVKMSRKPRASSPFSNNHPSTPK 55
RLY + G ++ PR+SS S + PS K
Sbjct: 350 RLYLNCGEASQTQNPRSSSTHSEHKPSREK 379
>gi|75832029 connexin 43-interacting protein 150 isoform a [Homo
sapiens]
Length = 1344
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 26 RLYRDTGLVKMSRKPRASSPFSNNHPSTPK 55
RLY + G ++ PR+SS S + PS K
Sbjct: 350 RLYLNCGEASQTQNPRSSSTHSEHKPSREK 379
>gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo
sapiens]
Length = 500
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 29 RDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREKGPVKEVPGTKGSP 78
++ G + P SSP HP P R ++ + P +P T+GSP
Sbjct: 421 QEVGSKALRGSPAHSSPAL--HPGVPGRRDQRRSEVEPPTLALPLTRGSP 468
>gi|118498364 dapper 1 isoform 2 [Homo sapiens]
Length = 799
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 35 KMSRKPRASSPFSNNHP-STPKRFPRQPKREKGPVKEVPGTKGSP 78
K + P P NN S PK++ ++ K E+ K VP +G P
Sbjct: 359 KQACLPSGGIPSLNNGTFSPPKQWSKESKAEQAESKRVPLPEGCP 403
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,587,562
Number of Sequences: 37866
Number of extensions: 156136
Number of successful extensions: 616
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 37
length of query: 78
length of database: 18,247,518
effective HSP length: 50
effective length of query: 28
effective length of database: 16,354,218
effective search space: 457918104
effective search space used: 457918104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.