Guide to the Human Genome
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Name: LOC100292725 Sequence: fasta or formatted (97aa) NCBI GI: 239757572
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2          5           1
 C cysteine            3.1          3           1
 D aspartate           3.1          3           1
 E glutamate           5.2          5           1
 F phenylalanine       0.0          0           0
 G glycine             7.2          7           1
 H histidine           4.1          4           1
 I isoleucine          4.1          4           1
 K lysine              6.2          6           1
 L leucine             8.2          8           2
 M methionine          3.1          3           1
 N asparagine          3.1          3           1
 P proline             8.2          8           1
 Q glutamine           3.1          3           1
 R arginine           10.3         10           1
 S serine              9.3          9           2
 T threonine           7.2          7           1
 V valine              4.1          4           1
 W tryptophan          2.1          2           1
 Y tyrosine            3.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291204          1.000   PREDICTED: hypothetical protein XP_002348102 
LOC100288521          1.000   PREDICTED: hypothetical protein XP_002343785 
MED12L                0.022   mediator of RNA polymerase II transcription, subunit...
POLA2                 0.011   DNA-directed DNA polymerase alpha 2 
PHTF2                 0.011   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.011   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.011   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.011   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.011   putative homeodomain transcription factor 2 isoform...
CCNL1                 0.011   cyclin L1 
LOC100292629          0.011   PREDICTED: hypothetical protein 
LOC100289960          0.011   PREDICTED: hypothetical protein XP_002346853 
LOC100286905          0.011   PREDICTED: hypothetical protein XP_002342691 
BTBD12                0.011   BTB (POZ) domain containing 12 
RPRD2                 0.011   Regulation of nuclear pre-mRNA domain containing 2 ...
STOX2                 0.011   storkhead box 2 
CSAG1                 0.005   chondrosarcoma associated gene 1 
CSAG1                 0.005   chondrosarcoma associated gene 1 
MEP1A                 0.005   meprin A alpha 
PHIP                  0.005   pleckstrin homology domain interacting protein [Homo...
RNF43                 0.005   ring finger protein 43 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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