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Search of human proteins with 239758158
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758158 PREDICTED: hypothetical protein [Homo sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758158 PREDICTED: hypothetical protein [Homo sapiens] 467 e-132
gi|239743829 PREDICTED: hypothetical protein XP_002344304 [Homo ... 446 e-125
gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo ... 319 1e-87
gi|239757462 PREDICTED: hypothetical protein XP_002345445 [Homo ... 310 9e-85
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 34 0.12
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 34 0.12
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 34 0.12
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 32 0.59
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 32 0.59
gi|57864582 hornerin [Homo sapiens] 31 1.0
gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens] 31 1.0
gi|239753353 PREDICTED: hypothetical protein [Homo sapiens] 30 1.7
gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo ... 30 1.7
gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo ... 30 1.7
gi|188536004 zinc finger protein 469 [Homo sapiens] 30 1.7
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 30 1.7
gi|226437602 NK1 homeobox 2 [Homo sapiens] 29 3.0
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 29 3.0
gi|57546899 myeloid/lymphoid or mixed-lineage leukemia transloca... 29 3.0
gi|4757726 myeloid/lymphoid or mixed-lineage leukemia translocat... 29 3.0
gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens] 29 3.0
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 28 5.0
gi|194440660 topoisomerase (DNA) II binding protein 1 [Homo sapi... 28 5.0
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 28 5.0
gi|41281612 zinc finger protein 828 [Homo sapiens] 28 5.0
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 28 6.6
gi|197276661 paired box 1 [Homo sapiens] 28 6.6
gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sap... 28 6.6
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 28 6.6
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 28 6.6
>gi|239758158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 467 bits (1201), Expect = e-132
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MPTISWRIERYTCHLFWHLHEARLLERVLKGSGFSSLLDTFFPSRLTISKLLFITEARRK 60
MPTISWRIERYTCHLFWHLHEARLLERVLKGSGFSSLLDTFFPSRLTISKLLFITEARRK
Sbjct: 1 MPTISWRIERYTCHLFWHLHEARLLERVLKGSGFSSLLDTFFPSRLTISKLLFITEARRK 60
Query: 61 AQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGG 120
AQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGG
Sbjct: 61 AQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGG 120
Query: 121 PASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKL 180
PASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKL
Sbjct: 121 PASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKL 180
Query: 181 GRLHIRILGHGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 230
GRLHIRILGHGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA
Sbjct: 181 GRLHIRILGHGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 230
>gi|239743829 PREDICTED: hypothetical protein XP_002344304 [Homo
sapiens]
Length = 259
Score = 446 bits (1146), Expect = e-125
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 11 YTCHLFWHLHEARLLERVLKGSGFSSLLDTFFPSRLTISKLLFITEARRKAQYLHVQSTS 70
YTCHLFWHLHEARLLERVLKGSGFSSLLDTFFPSRLTISKLLFITEARRKAQYLHVQSTS
Sbjct: 40 YTCHLFWHLHEARLLERVLKGSGFSSLLDTFFPSRLTISKLLFITEARRKAQYLHVQSTS 99
Query: 71 GKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGGPASIQPRQGQ 130
GKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGGPASIQPRQGQ
Sbjct: 100 GKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGGPASIQPRQGQ 159
Query: 131 SEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKLGRLHIRILGH 190
SEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKLGRLHIRILGH
Sbjct: 160 SEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKLGRLHIRILGH 219
Query: 191 GSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 230
GSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA
Sbjct: 220 GSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 259
>gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo
sapiens]
Length = 271
Score = 319 bits (817), Expect = 1e-87
Identities = 156/177 (88%), Positives = 165/177 (93%)
Query: 54 ITEARRKAQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLC 113
I + R AQYL+VQSTSGKSASRGLERCL+GPKLVGTG RVTRPSILFPGSSA+EAAPLC
Sbjct: 10 INQYRGNAQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLC 69
Query: 114 TGARKGGPASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHL 173
TGAR GPAS+QPRQGQSEAWEATKPAL TASTGFAGVEC+RKELRRLPPELQDPALHL
Sbjct: 70 TGARNRGPASVQPRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHL 129
Query: 174 GSLEHKLGRLHIRILGHGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 230
GSLEH+L RLHIR+LGHGSGRLLRG+AEAGSGRVCDLEQHQG EEQKWRRSKHS TA
Sbjct: 130 GSLEHELARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTA 186
>gi|239757462 PREDICTED: hypothetical protein XP_002345445 [Homo
sapiens]
Length = 259
Score = 310 bits (793), Expect = 9e-85
Identities = 152/170 (89%), Positives = 160/170 (94%)
Query: 61 AQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGG 120
AQYL+VQSTSGKSASRGLERCL+GPKLVGTG RVTRPSILFPGSSA+EAAPLCTGAR
Sbjct: 13 AQYLYVQSTSGKSASRGLERCLRGPKLVGTGPRVTRPSILFPGSSAREAAPLCTGARNRR 72
Query: 121 PASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKL 180
PAS+Q RQGQSEAWEATKPAL TASTGFAGVEC+RKELRRLPPELQDPALHLGSLEH+L
Sbjct: 73 PASVQHRQGQSEAWEATKPALCTTASTGFAGVECIRKELRRLPPELQDPALHLGSLEHEL 132
Query: 181 GRLHIRILGHGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKWRRSKHSRTA 230
RLHIR+LGHGSGRLLRG+AEAGSGRVCDLEQHQG EEQKWRRSKHS TA
Sbjct: 133 ARLHIRVLGHGSGRLLRGQAEAGSGRVCDLEQHQGREEQKWRRSKHSLTA 182
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 33.9 bits (76), Expect = 0.12
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 36 SLLDTFFPSRLTISKLLFITEARRKAQYLHVQSTSGKSA-SRGLERCLKGPKLVGTGSRV 94
S+LD P + T + L + A R+A+ + +GK A SR R L+ P S +
Sbjct: 21 SVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPGQGFAASLL 80
Query: 95 TRPSILFPGSSAQEAAPLCTGARKGGPASIQPRQGQSEAWEATKPALRITASTGFAGV 152
TR + S A++AA GA + P + + +A + +P LR A+ G+
Sbjct: 81 TRQAHPHHSSDARDAAG--PGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGL 136
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 33.9 bits (76), Expect = 0.12
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 36 SLLDTFFPSRLTISKLLFITEARRKAQYLHVQSTSGKSA-SRGLERCLKGPKLVGTGSRV 94
S+LD P + T + L + A R+A+ + +GK A SR R L+ P S +
Sbjct: 21 SVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPGQGFAASLL 80
Query: 95 TRPSILFPGSSAQEAAPLCTGARKGGPASIQPRQGQSEAWEATKPALRITASTGFAGV 152
TR + S A++AA GA + P + + +A + +P LR A+ G+
Sbjct: 81 TRQAHPHHSSDARDAAG--PGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGL 136
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 33.9 bits (76), Expect = 0.12
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 36 SLLDTFFPSRLTISKLLFITEARRKAQYLHVQSTSGKSA-SRGLERCLKGPKLVGTGSRV 94
S+LD P + T + L + A R+A+ + +GK A SR R L+ P S +
Sbjct: 21 SVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPGQGFAASLL 80
Query: 95 TRPSILFPGSSAQEAAPLCTGARKGGPASIQPRQGQSEAWEATKPALRITASTGFAGV 152
TR + S A++AA GA + P + + +A + +P LR A+ G+
Sbjct: 81 TRQAHPHHSSDARDAAG--PGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGL 136
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 31.6 bits (70), Expect = 0.59
Identities = 37/152 (24%), Positives = 49/152 (32%), Gaps = 4/152 (2%)
Query: 71 GKSASRGLERCLKGPKLVGTGSRVTRPSILFP-GSSAQEAAPLCTGARKGGPASIQPRQG 129
GK G E + G G + R P G A+EAA TG R+ P + PR
Sbjct: 175 GKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPA 234
Query: 130 QSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKLGRLHIRILG 189
A P +R + G + V E + G R+ G
Sbjct: 235 LP---SAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGG 291
Query: 190 HGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKW 221
G+GR R E R E G + W
Sbjct: 292 RGTGRARRAEFRVAGPRGVAEEAESGRGWRSW 323
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 31.6 bits (70), Expect = 0.59
Identities = 37/152 (24%), Positives = 49/152 (32%), Gaps = 4/152 (2%)
Query: 71 GKSASRGLERCLKGPKLVGTGSRVTRPSILFP-GSSAQEAAPLCTGARKGGPASIQPRQG 129
GK G E + G G + R P G A+EAA TG R+ P + PR
Sbjct: 175 GKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPA 234
Query: 130 QSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKLGRLHIRILG 189
A P +R + G + V E + G R+ G
Sbjct: 235 LP---SAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGG 291
Query: 190 HGSGRLLRGEAEAGSGRVCDLEQHQGGEEQKW 221
G+GR R E R E G + W
Sbjct: 292 RGTGRARRAEFRVAGPRGVAEEAESGRGWRSW 323
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 190 HGSGRLL---RGEAEAGSGRVCDLEQHQGGEEQKWRRSKH 226
HGSG RG E+GSG+ QH+ G Q SKH
Sbjct: 325 HGSGSSYSYSRGHYESGSGQTSGFGQHESGSGQSSGYSKH 364
>gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens]
Length = 453
Score = 30.8 bits (68), Expect = 1.0
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 56 EARRKAQYLHVQSTSGKSASRGLERCLKGPKLVGT--GSRVTRPSILFPGSSAQEAAPLC 113
EA+ KA + ++ + A +G VGT G+R PS+ PG P
Sbjct: 105 EAKAKALFNTLKEQASAKAGKGAR--------VGTISGNRTLAPSLPCPGGRGGGCHPTR 156
Query: 114 TGARKGGPASIQPRQGQSEAWEATKPA 140
+G+R GG AS + + G++ + PA
Sbjct: 157 SGSRAGGRASGKSK-GKARSKSTRAPA 182
>gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 448
Score = 30.0 bits (66), Expect = 1.7
Identities = 42/143 (29%), Positives = 55/143 (38%), Gaps = 36/143 (25%)
Query: 72 KSASRGLERCLKGPK----LVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGGPASIQPR 127
K S G R +KGP+ GTG +T S L PG A+ P Q
Sbjct: 11 KERSGGAAR-VKGPRGGGRAGGTGRSITAASELSPGERARRKKP-------------QSA 56
Query: 128 QGQSEAWEAT---KPAL---RITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKLG 181
+ S AWEA+ PAL R TG G E +++R +DP L
Sbjct: 57 REASRAWEASISRDPALSPGRGRRQTGSPGGE--GRQVRGGARNSRDPGL---------- 104
Query: 182 RLHIRILGHGSGRLLRGEAEAGS 204
R +R +LL G E G+
Sbjct: 105 RSEMRPFREAFAKLLSGSPERGA 127
>gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo
sapiens]
Length = 448
Score = 30.0 bits (66), Expect = 1.7
Identities = 42/143 (29%), Positives = 55/143 (38%), Gaps = 36/143 (25%)
Query: 72 KSASRGLERCLKGPK----LVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGGPASIQPR 127
K S G R +KGP+ GTG +T S L PG A+ P Q
Sbjct: 11 KERSGGAAR-VKGPRGGGRAGGTGRSITAASELSPGERARRKKP-------------QSA 56
Query: 128 QGQSEAWEAT---KPAL---RITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKLG 181
+ S AWEA+ PAL R TG G E +++R +DP L
Sbjct: 57 REASRAWEASISRDPALSPGRGRRQTGSPGGE--GRQVRGGARNSRDPGL---------- 104
Query: 182 RLHIRILGHGSGRLLRGEAEAGS 204
R +R +LL G E G+
Sbjct: 105 RSEMRPFREAFAKLLSGSPERGA 127
>gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo
sapiens]
Length = 448
Score = 30.0 bits (66), Expect = 1.7
Identities = 42/143 (29%), Positives = 55/143 (38%), Gaps = 36/143 (25%)
Query: 72 KSASRGLERCLKGPK----LVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGGPASIQPR 127
K S G R +KGP+ GTG +T S L PG A+ P Q
Sbjct: 11 KERSGGAAR-VKGPRGGGRAGGTGRSITAASELSPGERARRKKP-------------QSA 56
Query: 128 QGQSEAWEAT---KPAL---RITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKLG 181
+ S AWEA+ PAL R TG G E +++R +DP L
Sbjct: 57 REASRAWEASISRDPALSPGRGRRQTGSPGGE--GRQVRGGARNSRDPGL---------- 104
Query: 182 RLHIRILGHGSGRLLRGEAEAGS 204
R +R +LL G E G+
Sbjct: 105 RSEMRPFREAFAKLLSGSPERGA 127
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 102 PGSSAQEAAPLCTGARKGGPASIQPRQGQSEAWEATKPA 140
PG S+Q + G + GG + QP GQ ++ AT PA
Sbjct: 3700 PGPSSQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPA 3738
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 30.0 bits (66), Expect = 1.7
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 43 PSRLTISKLLFITEARRKAQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFP 102
P RL +++ L +T+ + K Y + + K +G + PK R + SI P
Sbjct: 161 PDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPK-----GRPKKNSI--P 213
Query: 103 GSSAQEAAPLCTGARKGGPASIQPRQGQSEAWEATKPALR 142
S EA +G ++P QGQ E EA +P R
Sbjct: 214 TSEEIEAEEKMNSQAQG-QEQLEPSQGQEELCEAQEPKAR 252
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 3.0
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 36 SLLDTFFPSRLTISKLLFITEARRKAQYLHVQSTSGKSA-SRGLERCLKGPKLVGTGSRV 94
S+LD P + T + L + A R+A+ + +GK A SR R L+ P G G+
Sbjct: 21 SVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQ 80
Query: 95 TRPSILFPGSSAQE 108
P GS A+E
Sbjct: 81 ASP---LEGSEAEE 91
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 29.3 bits (64), Expect = 3.0
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 105 SAQEAAPLCTGARKGGPASIQPRQGQSE-AWEATKPALRITASTGFAGVECVRKELRRLP 163
S E P C KG PR G + W + + G G R +R P
Sbjct: 494 SGAELGPNCRVKAKGAVQCATPRAGLTYLGWVE-----ELQHAVGAIGA---RGPAQRQP 545
Query: 164 PELQD-PALHLGSL-----EHKL-GRLHIRILGHGSGRLLRGEAEAGSG 205
P L PA+H G + +H+L RL R+ G G+ L G+A G G
Sbjct: 546 PALPACPAVHGGLVGQAVAQHRLLQRLGWRLPGQAPGQELLGQARPGGG 594
>gi|57546899 myeloid/lymphoid or mixed-lineage leukemia translocated
to, 10 isoform b [Homo sapiens]
Length = 1011
Score = 29.3 bits (64), Expect = 3.0
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 55 TEARRKAQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSI-LFPGSSAQEAAPLC 113
T A + H S S +RG E K +G R +P PG++ A+P
Sbjct: 290 TNANFQEVSAHTSSGKDVSETRGSEGKGKKSSAHSSGQRGRKPGGGRNPGTTVSAASPFP 349
Query: 114 TGARKGGPASIQPRQGQS 131
G+ G P S++ G S
Sbjct: 350 QGSFSGTPGSVKSSSGSS 367
>gi|4757726 myeloid/lymphoid or mixed-lineage leukemia translocated
to, 10 isoform a [Homo sapiens]
Length = 1027
Score = 29.3 bits (64), Expect = 3.0
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 55 TEARRKAQYLHVQSTSGKSASRGLERCLKGPKLVGTGSRVTRPSI-LFPGSSAQEAAPLC 113
T A + H S S +RG E K +G R +P PG++ A+P
Sbjct: 290 TNANFQEVSAHTSSGKDVSETRGSEGKGKKSSAHSSGQRGRKPGGGRNPGTTVSAASPFP 349
Query: 114 TGARKGGPASIQPRQGQS 131
G+ G P S++ G S
Sbjct: 350 QGSFSGTPGSVKSSSGSS 367
>gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens]
Length = 991
Score = 29.3 bits (64), Expect = 3.0
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 23/113 (20%)
Query: 68 STSGKSASRGLERCLKGPKLVGTGS-------------RVTRPSILFPGSSAQEAAPLCT 114
S+ G S ++G R K +L+ T + RV P++L A+ A P C
Sbjct: 735 SSGGSSLAKG--RASKKQQLLATAAHKDSQSIARFFCRRVESPALLASAPEAEGACPSCE 792
Query: 115 GARKGGPASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQ 167
G +G P + + G+ + PA T EC+R+ PP Q
Sbjct: 793 GV-QGPPMAPEKYTGEEDGAGGHSPAPPQTE-------ECLRERPSTCPPRDQ 837
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 28.5 bits (62), Expect = 5.0
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 104 SSAQEAAPLCTGAR----KGGPASIQPRQGQSEAWE-----ATKPALRITASTGFAGVEC 154
+SA+ +PL +G R K P PR SEA T P+ R +A T +GV
Sbjct: 674 ASARLFSPLHSGTRFDMHKRSPLLRAPRFTPSEAHSRIFESVTLPSNRTSAGTSSSGVSN 733
Query: 155 VRKELRRLPPELQDPALHLGSLEHKLGRL 183
+++ + P +P S+ + GRL
Sbjct: 734 RKRKRKVFSPIRSEPRSPSHSMRTRSGRL 762
>gi|194440660 topoisomerase (DNA) II binding protein 1 [Homo
sapiens]
Length = 1522
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 122 ASIQPRQGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGS 175
AS Q ++ QSE EA KP ++ V CV K+L + EL A LG+
Sbjct: 887 ASPQLKEAQSEKEEAPKPLHKV--------VVCVSKKLSKKQSELNGIAASLGA 932
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 28.5 bits (62), Expect = 5.0
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Query: 76 RGLERCLKGPKL----VGTGSRVTRPSILFPGSSAQEAAPLCTGARKGGPASIQP----R 127
RG+ R G K G G P+ + A ++ L + A P ++P R
Sbjct: 150 RGVARASLGDKAGAGRAGRGRPAQSPAEADAAARASKSLKLLSSAL---PPHLRPAAKTR 206
Query: 128 QGQSEAWEATKPALRITASTGFAGVECVRKELRRLPPELQDPALHLGSLEHKLGRLHIRI 187
+ + PALR G + RLPP AL L H+L R H R
Sbjct: 207 AVAGPTAKESPPALRTVGDGPRPGPKRPDPAPSRLPPPPHAGALRGPPLPHRLRRSHFRE 266
Query: 188 LGHG 191
+G G
Sbjct: 267 VGGG 270
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 28.5 bits (62), Expect = 5.0
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 70 SGKSASRGLERCLKGPKLVGTGSRVTRPSIL-FPGSSAQEAAPLCTGARKGGPASIQPRQ 128
S SAS G + K V G PS+ P + + P+S +
Sbjct: 325 SNPSASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPP 384
Query: 129 GQSEAWEATKPALRITAST----GFAGVECVRKELRR----LPPELQDPA 170
E+W++ P LR TA T + V V ELR+ L PE++ PA
Sbjct: 385 ASPESWKSGPPELRKTAPTLSPEHWKAVPPVSPELRKPGPPLSPEIRSPA 434
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 28.1 bits (61), Expect = 6.6
Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 77 GLERCLKGPKLVGTGSR-VTRPSILFPGSSAQEAAPLCTGA---RKGGPASIQPRQGQSE 132
GL C K P G R TR S + L T GGP S G
Sbjct: 526 GLPGCPKAPPSPGRSRRGKTRHRKASAKGSCGDLPGLRTAVPPHEPGGPGSPGGLGGGPS 585
Query: 133 AWEATKPALR 142
AWEA PALR
Sbjct: 586 AWEACPPALR 595
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 70 SGKSASRGLERCLKGPKLVGTGSRVTR--PSILFPGSSAQEAAPLCTGARKGGPASIQPR 127
+G SA R + + P+L GSR++ P L G +A P C G G P R
Sbjct: 28 AGGSALRCRAQRVSSPRLGRRGSRLSGALPLCLSRGGGGAQALPDCAGPSPGHPGHPGAR 87
Query: 128 Q 128
Q
Sbjct: 88 Q 88
>gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo
sapiens]
Length = 633
Score = 28.1 bits (61), Expect = 6.6
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 26/157 (16%)
Query: 89 GTGSRVTRPSIL---FPGSSAQEAAPLCTGARKGGPASIQPRQGQSEAWEATKPA----- 140
G+G + +PS L PG A + P G +G + + + E W+ +PA
Sbjct: 135 GSGPCLPQPSSLPPLIPGGHATVSGP---GVARGFASPLGAGRASGEQWQPPRPAPLAAC 191
Query: 141 --LRITASTGFAGVECVRKELRRLPPELQDPALHL------GSLEHKLGRLHIRILGHGS 192
L++ +G AG E + ++ + +Q PA GS GRL+
Sbjct: 192 AQLQLLDGSGAAGQEELEEDDAFI--SVQVPAAAFLGSGTPGSGSGSRGRLN----SFTQ 245
Query: 193 GRLLRGEAEAGSGRVCDLEQ-HQGGEEQKWRRSKHSR 228
G L + S C LEQ QGG + + + SR
Sbjct: 246 GILPIAFSRPTSQNYCSLEQPGQGGSTSAFEQLQRSR 282
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 67 QSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGGPASIQP 126
+ + + GL + K VG G +V S+ GS Q AP+ G K GP Q
Sbjct: 620 EESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSLGQGTAPVLPG--KTGPTVTQV 677
Query: 127 RQGQSEAWEATK 138
+ + E E+++
Sbjct: 678 KAEKQEDSESSE 689
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 67 QSTSGKSASRGLERCLKGPKLVGTGSRVTRPSILFPGSSAQEAAPLCTGARKGGPASIQP 126
+ + + GL + K VG G +V S+ GS Q AP+ G K GP Q
Sbjct: 697 EESDSEEEKTGLAVTVGQAKSVGKGLQVKAASVPVKGSLGQGTAPVLPG--KTGPTVTQV 754
Query: 127 RQGQSEAWEATK 138
+ + E E+++
Sbjct: 755 KAEKQEDSESSE 766
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,066,698
Number of Sequences: 37866
Number of extensions: 480907
Number of successful extensions: 1367
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1341
Number of HSP's gapped (non-prelim): 60
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.