Search of human proteins with 239758135

Search of human proteins with 239758135

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239758135 PREDICTED: similar to cell recognition molecule
CASPR3 [Homo sapiens]
         (140 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758135 PREDICTED: similar to cell recognition molecule CAS...   273   3e-74
gi|239743797 PREDICTED: similar to cell recognition molecule CAS...   272   6e-74
gi|169184330 PREDICTED: novel protein similar to contactin assoc...   269   5e-73
gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]           268   1e-72
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2...   265   7e-72
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1...   265   7e-72
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap...   193   4e-50
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap...   193   4e-50
gi|239752499 PREDICTED: similar to cell recognition molecule Cas...   146   6e-36
gi|18640734 contactin associated protein-like 5 [Homo sapiens]        105   9e-24
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi...    95   2e-20
gi|4505463 contactin associated protein 1 precursor [Homo sapiens]     67   5e-12
gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]        35   0.026
gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]        35   0.026
gi|41327708 crumbs homolog 1 precursor [Homo sapiens]                  33   0.100
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s...    32   0.13 
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa...    32   0.13 
gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]            32   0.22 
gi|118150678 epithelial cell transforming sequence 2 oncogene-li...    28   3.2  
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]     27   4.2  
gi|116534898 desmoglein 2 preproprotein [Homo sapiens]                 27   5.5  
gi|188528675 slit homolog 1 [Homo sapiens]                             27   7.1  
gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo sap...    27   7.1  
gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens]    26   9.3  
gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens]      26   9.3  
gi|55741661 hypothetical protein LOC57653 [Homo sapiens]               26   9.3  
gi|54873624 eukaryotic translation initiation factor 2A [Homo sa...    26   9.3  

>gi|239758135 PREDICTED: similar to cell recognition molecule CASPR3
           [Homo sapiens]
          Length = 140

 Score =  273 bits (699), Expect = 3e-74
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60
           MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI
Sbjct: 1   MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60

Query: 61  LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120
           LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL
Sbjct: 61  LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120

Query: 121 SSGTEFNAVKSLILGKVLGK 140
           SSGTEFNAVKSLILGKVLGK
Sbjct: 121 SSGTEFNAVKSLILGKVLGK 140


>gi|239743797 PREDICTED: similar to cell recognition molecule CASPR3
           [Homo sapiens]
          Length = 944

 Score =  272 bits (696), Expect = 6e-74
 Identities = 139/140 (99%), Positives = 140/140 (100%)

Query: 1   MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60
           MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI
Sbjct: 743 MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 802

Query: 61  LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120
           LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL
Sbjct: 803 LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 862

Query: 121 SSGTEFNAVKSLILGKVLGK 140
           SSGTEFNAVKSLILGKVLG+
Sbjct: 863 SSGTEFNAVKSLILGKVLGR 882


>gi|169184330 PREDICTED: novel protein similar to contactin
           associated protein-like 3 (CNTNAP3) [Homo sapiens]
          Length = 291

 Score =  269 bits (688), Expect = 5e-73
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60
           MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI
Sbjct: 13  MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 72

Query: 61  LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120
           LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL
Sbjct: 73  LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 132

Query: 121 SSGTEFNAVKSLILGKVL 138
           SSGTEFNAVKSLILGKVL
Sbjct: 133 SSGTEFNAVKSLILGKVL 150


>gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]
          Length = 1288

 Score =  268 bits (684), Expect = 1e-72
 Identities = 137/138 (99%), Positives = 137/138 (99%)

Query: 1    MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60
            MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI
Sbjct: 1010 MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 1069

Query: 61   LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120
            LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQS KKQVIL
Sbjct: 1070 LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSTKKQVIL 1129

Query: 121  SSGTEFNAVKSLILGKVL 138
            SSGTEFNAVKSLILGKVL
Sbjct: 1130 SSGTEFNAVKSLILGKVL 1147


>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
            [Homo sapiens]
          Length = 1207

 Score =  265 bits (678), Expect = 7e-72
 Identities = 136/138 (98%), Positives = 138/138 (100%)

Query: 1    MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60
            MTYHFQEHYTLSENSSSLVSSL+RDVTLTREMITLSFRTTR+PSLLLYVSSFYEEYLSVI
Sbjct: 929  MTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVI 988

Query: 61   LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120
            LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL
Sbjct: 989  LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 1048

Query: 121  SSGTEFNAVKSLILGKVL 138
            SSGTEFNAVKSLILGKVL
Sbjct: 1049 SSGTEFNAVKSLILGKVL 1066


>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
            [Homo sapiens]
          Length = 1288

 Score =  265 bits (678), Expect = 7e-72
 Identities = 136/138 (98%), Positives = 138/138 (100%)

Query: 1    MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60
            MTYHFQEHYTLSENSSSLVSSL+RDVTLTREMITLSFRTTR+PSLLLYVSSFYEEYLSVI
Sbjct: 1010 MTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVI 1069

Query: 61   LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120
            LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL
Sbjct: 1070 LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 1129

Query: 121  SSGTEFNAVKSLILGKVL 138
            SSGTEFNAVKSLILGKVL
Sbjct: 1130 SSGTEFNAVKSLILGKVL 1147


>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sapiens]
          Length = 1235

 Score =  193 bits (490), Expect = 4e-50
 Identities = 93/136 (68%), Positives = 116/136 (85%)

Query: 3    YHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILA 62
            Y+FQE+Y LS+NSSS  +S H D+ L+REMI  SFRTTRTPSLLL+VSSFY+EYLSVI+A
Sbjct: 939  YNFQENYLLSKNSSSHAASFHGDMKLSREMIKFSFRTTRTPSLLLFVSSFYKEYLSVIIA 998

Query: 63   NNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSS 122
             NGSLQIRYKL+++Q PD   FDFKNMADGQLH + INREE VV +E++ + ++QV LSS
Sbjct: 999  KNGSLQIRYKLNKYQEPDVVNFDFKNMADGQLHHIMINREEGVVFIEIDDNRRRQVHLSS 1058

Query: 123  GTEFNAVKSLILGKVL 138
            GTEF+AVKSL+LG++L
Sbjct: 1059 GTEFSAVKSLVLGRIL 1074


>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sapiens]
          Length = 1308

 Score =  193 bits (490), Expect = 4e-50
 Identities = 93/136 (68%), Positives = 116/136 (85%)

Query: 3    YHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILA 62
            Y+FQE+Y LS+NSSS  +S H D+ L+REMI  SFRTTRTPSLLL+VSSFY+EYLSVI+A
Sbjct: 1012 YNFQENYLLSKNSSSHAASFHGDMKLSREMIKFSFRTTRTPSLLLFVSSFYKEYLSVIIA 1071

Query: 63   NNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSS 122
             NGSLQIRYKL+++Q PD   FDFKNMADGQLH + INREE VV +E++ + ++QV LSS
Sbjct: 1072 KNGSLQIRYKLNKYQEPDVVNFDFKNMADGQLHHIMINREEGVVFIEIDDNRRRQVHLSS 1131

Query: 123  GTEFNAVKSLILGKVL 138
            GTEF+AVKSL+LG++L
Sbjct: 1132 GTEFSAVKSLVLGRIL 1147


>gi|239752499 PREDICTED: similar to cell recognition molecule
           Caspr2, partial [Homo sapiens]
          Length = 140

 Score =  146 bits (368), Expect = 6e-36
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 65  GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 124
           GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT
Sbjct: 2   GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61

Query: 125 EFNAVKSLILGKVL 138
           EFNAVKSLILGKVL
Sbjct: 62  EFNAVKSLILGKVL 75


>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
          Length = 1306

 Score =  105 bits (263), Expect = 9e-24
 Identities = 54/137 (39%), Positives = 88/137 (64%), Gaps = 1/137 (0%)

Query: 1    MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60
            +TY FQE Y +++N S   S+++ D   ++E I LSF TT+ PSLLL+++S  ++++ V+
Sbjct: 1008 VTYMFQEPYPVTKNISLSSSAIYTDSAPSKENIALSFVTTQAPSLLLFINSSSQDFVVVL 1067

Query: 61   LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120
            L  NGSLQ+RY L++ +    FT D  N A+ ++H +KINRE   + ++++Q  +     
Sbjct: 1068 LCKNGSLQVRYHLNKEET-HVFTIDADNFANRRMHHLKINREGRELTIQMDQQLRLSYNF 1126

Query: 121  SSGTEFNAVKSLILGKV 137
            S   EF  ++SL LGKV
Sbjct: 1127 SPEVEFRVIRSLTLGKV 1143


>gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapiens]
          Length = 1331

 Score = 95.1 bits (235), Expect = 2e-20
 Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 10/146 (6%)

Query: 1    MTYHFQEHYTLSENSSSLVSSL------HRDVTLTREMITLSFRTTRTPSLLLYVSSFYE 54
            + Y+FQ   T + +SSS V +       H D  L +E I  SF TT+ P +LLY+SSF  
Sbjct: 1015 LRYNFQAPATNARDSSSRVDNAPDQQNSHPD--LAQEEIRFSFSTTKAPCILLYISSFTT 1072

Query: 55   EYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQ-- 112
            ++L+V++   GSLQIRY L   + P     D +NMA+GQ H V I R E  + ++++   
Sbjct: 1073 DFLAVLVKPTGSLQIRYNLGGTREPYNIDVDHRNMANGQPHSVNITRHEKTIFLKLDHYP 1132

Query: 113  SAKKQVILSSGTEFNAVKSLILGKVL 138
            S    +  SS T FN+ KSL LGKV+
Sbjct: 1133 SVSYHLPSSSDTLFNSPKSLFLGKVI 1158


>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
          Length = 1384

 Score = 67.0 bits (162), Expect = 5e-12
 Identities = 35/113 (30%), Positives = 68/113 (60%), Gaps = 4/113 (3%)

Query: 28   LTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFK 87
            +T E ++ SF T+  P++LLYVSSF  +Y++V++ ++G+LQ+RY+L    +P  +    +
Sbjct: 1079 VTGEEVSFSFSTSSAPAVLLYVSSFVRDYMAVLIKDDGTLQLRYQLG--TSPYVYQLTTR 1136

Query: 88   NMADGQLHQVKINR--EEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVL 138
             + DGQ H + I R      + V+     +++  L   ++ ++ K+L LG+V+
Sbjct: 1137 PVTDGQPHSINITRVYRNLFIQVDYFPLTEQKFSLLVDSQLDSPKALYLGRVM 1189


>gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]
          Length = 1712

 Score = 34.7 bits (78), Expect = 0.026
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 33  ITLSFRTTRTPSLLLYVSSFYE-EYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMAD 91
           ++ S RT  T +LLLY+    + ++L ++L + G L++R+ L   + P     D   +AD
Sbjct: 53  LSFSLRTNATRALLLYLDDGGDCDFLELLLVD-GRLRLRFTLSCAE-PATLQLDTP-VAD 109

Query: 92  GQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKV 137
            + H V + R+     + V+  A+   + S   E      L +G +
Sbjct: 110 DRWHMVLLTRDARRTALAVDGEARAAEVRSKRREMQVASDLFVGGI 155


>gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]
          Length = 1642

 Score = 34.7 bits (78), Expect = 0.026
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 33  ITLSFRTTRTPSLLLYVSSFYE-EYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMAD 91
           ++ S RT  T +LLLY+    + ++L ++L + G L++R+ L   + P     D   +AD
Sbjct: 53  LSFSLRTNATRALLLYLDDGGDCDFLELLLVD-GRLRLRFTLSCAE-PATLQLDTP-VAD 109

Query: 92  GQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKV 137
            + H V + R+     + V+  A+   + S   E      L +G +
Sbjct: 110 DRWHMVLLTRDARRTALAVDGEARAAEVRSKRREMQVASDLFVGGI 155


>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
          Length = 1406

 Score = 32.7 bits (73), Expect = 0.100
 Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 33  ITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADG 92
           I L F+T +  +LLL+ S+  + ++ + L +     I   +  +       F   N +DG
Sbjct: 510 IALRFQTVQPMALLLFRSN-RDVFVKLELLSG---YIHLSIQVNNQSKVLLFISHNTSDG 565

Query: 93  QLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSL 132
           + H V++   EAV +  ++ S K++ I  + T   + +S+
Sbjct: 566 EWHFVEVIFAEAVTLTLIDDSCKEKCIAKAPTPLESDQSI 605


>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
            sapiens]
          Length = 3118

 Score = 32.3 bits (72), Expect = 0.13
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 7    EHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGS 66
            + + LS NS   ++     V   R  I L  RT     LL Y++       + +   NG 
Sbjct: 2760 KQFGLSRNSHIAIAFDDTKVK-NRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGL 2818

Query: 67   LQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEF 126
                Y L    + D  T     + DGQ H++KI R +   ++ V+ ++ + +        
Sbjct: 2819 PYFSYDLG---SGDTHTMIPTKINDGQWHKIKIMRSKQEGILYVDGASNRTISPKKADIL 2875

Query: 127  NAVKSLILG 135
            + V  L +G
Sbjct: 2876 DVVGMLYVG 2884



 Score = 26.2 bits (56), Expect = 9.3
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 32   MITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDF---KN 88
            ++   FRTT T  +LL +SS   + + + + +    ++ + +D         +D     +
Sbjct: 2959 LVEFEFRTTTTTGVLLGISSQKMDGMGIEMIDE---KLMFHVDNGAGRFTAVYDAGVPGH 3015

Query: 89   MADGQLHQVKINR 101
            + DGQ H+V  N+
Sbjct: 3016 LCDGQWHKVTANK 3028


>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
            sapiens]
          Length = 3122

 Score = 32.3 bits (72), Expect = 0.13
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 7    EHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGS 66
            + + LS NS   ++     V   R  I L  RT     LL Y++       + +   NG 
Sbjct: 2764 KQFGLSRNSHIAIAFDDTKVK-NRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGL 2822

Query: 67   LQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEF 126
                Y L    + D  T     + DGQ H++KI R +   ++ V+ ++ + +        
Sbjct: 2823 PYFSYDLG---SGDTHTMIPTKINDGQWHKIKIMRSKQEGILYVDGASNRTISPKKADIL 2879

Query: 127  NAVKSLILG 135
            + V  L +G
Sbjct: 2880 DVVGMLYVG 2888



 Score = 26.2 bits (56), Expect = 9.3
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 32   MITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDF---KN 88
            ++   FRTT T  +LL +SS   + + + + +    ++ + +D         +D     +
Sbjct: 2963 LVEFEFRTTTTTGVLLGISSQKMDGMGIEMIDE---KLMFHVDNGAGRFTAVYDAGVPGH 3019

Query: 89   MADGQLHQVKINR 101
            + DGQ H+V  N+
Sbjct: 3020 LCDGQWHKVTANK 3032


>gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]
          Length = 4588

 Score = 31.6 bits (70), Expect = 0.22
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 25/128 (19%)

Query: 9    YTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGSLQ 68
            Y L+EN + L   L           T+  RT  T ++++Y      +Y S++  ++G LQ
Sbjct: 3842 YRLTENENKLEMKL-----------TMRLRTYSTHAVVMYARG--TDY-SILEIHHGRLQ 3887

Query: 69   IRYKLDRHQNPDAFTFDFKNMADGQLHQV--KINREEAVVMVEVNQSAKKQVILSSGTEF 126
              YK D    P   +     + DGQ H V  ++N   A ++++       QV  +SGT  
Sbjct: 3888 --YKFDCGSGPGIVSVQSIQVNDGQWHAVALEVNGNYARLVLD-------QVHTASGTAP 3938

Query: 127  NAVKSLIL 134
              +K+L L
Sbjct: 3939 GTLKTLNL 3946


>gi|118150678 epithelial cell transforming sequence 2 oncogene-like
           [Homo sapiens]
          Length = 904

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 7/38 (18%)

Query: 25  DVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILA 62
           D T+  +M++L       P LLLY S  +EEYL+++ A
Sbjct: 692 DKTIVTKMLSL-------PELLLYPSRRFEEYLNLLYA 722


>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
          Length = 1979

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 3   YHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEE-YLSVIL 61
           +  Q+  + +EN    +SSL++D +L  + + L  R          +S   EE  +S++ 
Sbjct: 388 FRLQQALSDAENEIMRLSSLNQDNSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLK 447

Query: 62  ANNGSLQIRYKLDRHQNPDAFTFDFK---NMADGQLHQVKINREEAVVMVE----VNQSA 114
            NN    I+    R  + D+   D +      + +L+Q    +E  +  +E     NQ A
Sbjct: 448 LNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEELDRQNQEA 507

Query: 115 KKQVIL 120
            K +IL
Sbjct: 508 TKHMIL 513


>gi|116534898 desmoglein 2 preproprotein [Homo sapiens]
          Length = 1118

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 73  LDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKK------QVILSSGTEF 126
           LD H N   F+F   +   G   + KI R+E+   V + QS KK      Q ++S    F
Sbjct: 520 LDGHPNSGPFSFSVIDKPPGMAEKWKIARQES-TSVLLQQSEKKLGRSEIQFLISDNQGF 578

Query: 127 NAVKSLIL 134
           +  +  +L
Sbjct: 579 SCPEKQVL 586


>gi|188528675 slit homolog 1 [Homo sapiens]
          Length = 1534

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 30   REMITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNM 89
            R  ITL   T     +LLY      ++++V L       +R   D    P +  +  + +
Sbjct: 1187 RANITLQVSTAEDNGILLYNGD--NDHIAVELYQG---HVRVSYDPGSYPSSAIYSAETI 1241

Query: 90   ADGQLHQVKINREEAVVMVEVN 111
             DGQ H V++   + +V + ++
Sbjct: 1242 NDGQFHTVELVAFDQMVNLSID 1263


>gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo
           sapiens]
          Length = 558

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 77  QNPDAFT-FDFKNMADGQLHQVKIN-REEAVVMVEVN 111
           +NPDA + FD K+ AD ++ + ++N R E V+    N
Sbjct: 242 ENPDADSDFDAKSSADDEIEETRVNCRREKVIETPEN 278


>gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens]
          Length = 303

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 96  QVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKV 137
           +V ++  E + +++++      V L+SG E N V S  LG+V
Sbjct: 232 EVNVDMLEQMDLMDISDQEALDVFLNSGGEENTVLSPALGRV 273


>gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens]
          Length = 1294

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 57   LSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE--VNQSA 114
            L++I  NNG   IR +  +  NP+A   +  N      ++ ++N        E  + +S 
Sbjct: 946  LNIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGSNEEQVNGSPLERRSEDHLTESH 1005

Query: 115  KKQVILSSGTEFNAVKSL 132
            ++++ L S +++ A  SL
Sbjct: 1006 QREIPLPSLSKYEAQGSL 1023


>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
          Length = 1646

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 61  LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120
           L N  ++ + Y L    N  A    F N+ +  L Q   +R     +V+  ++ KK+ +L
Sbjct: 442 LINEEAMVMNYAL--LGNRKALAQLFVNLMESTLQQELDSRHRWQGLVDTWKALKKEALL 499

Query: 121 SSGTEFNAVKSL 132
            S +EF A +S+
Sbjct: 500 QSFSEFMASESI 511


>gi|54873624 eukaryotic translation initiation factor 2A [Homo
           sapiens]
          Length = 585

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query: 94  LHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGK 136
           LH +  N E AVV +  N      V  SS TEF AV   +  K
Sbjct: 256 LHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAK 298


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.130    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,162,201
Number of Sequences: 37866
Number of extensions: 140074
Number of successful extensions: 412
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 37
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.