Guide to the Human Genome
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Name: LOC100293021 Sequence: fasta or formatted (86aa) NCBI GI: 239758019
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            0.0          0           0
 D aspartate           2.3          2           1
 E glutamate          11.6         10           1
 F phenylalanine       0.0          0           0
 G glycine             5.8          5           1
 H histidine           3.5          3           2
 I isoleucine         10.5          9           3
 K lysine              4.7          4           1
 L leucine             0.0          0           0
 M methionine          9.3          8           1
 N asparagine         11.6         10           2
 P proline             0.0          0           0
 Q glutamine           1.2          1           1
 R arginine           12.8         11           1
 S serine             14.0         12           3
 T threonine           4.7          4           1
 V valine              1.2          1           1
 W tryptophan          4.7          4           1
 Y tyrosine            2.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291599          0.860   PREDICTED: hypothetical protein XP_002346265 
LOC100291569          0.841   PREDICTED: hypothetical protein XP_002346264 
LOC100292724          0.822   PREDICTED: hypothetical protein 
LOC100293418          0.796   PREDICTED: hypothetical protein 
LOC100293793          0.599   PREDICTED: hypothetical protein 
LOC100293129          0.223   PREDICTED: hypothetical protein 
LOC642424             0.191   PREDICTED: similar to hCG1742442 
CCNL1                 0.025   cyclin L1 
NKTR                  0.006   natural killer-tumor recognition sequence 
ZBBX                  0.006   zinc finger, B-box domain containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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