Guide to the Human Genome
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Name: LOC100292724 Sequence: fasta or formatted (127aa) NCBI GI: 239758079
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.8          1           1
 C cysteine            0.0          0           0
 D aspartate           1.6          2           1
 E glutamate          12.6         16           1
 F phenylalanine       0.8          1           1
 G glycine             6.3          8           1
 H histidine           3.1          4           2
 I isoleucine         10.2         13           3
 K lysine              3.9          5           2
 L leucine             0.8          1           1
 M methionine          8.7         11           1
 N asparagine         13.4         17           2
 P proline             1.6          2           1
 Q glutamine           0.8          1           1
 R arginine           10.2         13           1
 S serine             15.0         19           3
 T threonine           2.4          3           1
 V valine              1.6          2           1
 W tryptophan          5.5          7           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291599          0.898   PREDICTED: hypothetical protein XP_002346265 
LOC100291569          0.787   PREDICTED: hypothetical protein XP_002346264 
LOC100293418          0.758   PREDICTED: hypothetical protein 
LOC100293021          0.529   PREDICTED: hypothetical protein 
LOC100293793          0.410   PREDICTED: hypothetical protein 
LOC100293129          0.176   PREDICTED: hypothetical protein 
LOC642424             0.123   PREDICTED: similar to hCG1742442 
SMARCAL1              0.016   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAL1              0.016   SWI/SNF-related matrix-associated actin-dependent r...
IPMK                  0.012   inositol polyphosphate multikinase 
PAPOLG                0.008   poly(A) polymerase gamma 
ESF1                  0.008   ABT1-associated protein 
CCDC66                0.004   coiled-coil domain containing 66 isoform 1 
CCDC66                0.004   coiled-coil domain containing 66 isoform 2 
NLRP12                0.004   NLR family, pyrin domain containing 12 isoform 2 [Ho...
LOC100294457          0.004   PREDICTED: similar to hCG2038988 
SAV1                  0.004   WW45 protein 
AMY2A                 0.004   pancreatic amylase alpha 2A precursor 
CLTB                  0.004   clathrin, light polypeptide isoform a 
CWC22                 0.004   CWC22 spliceosome-associated protein homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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