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Search of human proteins with 239758069
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758069 PREDICTED: similar to FSHD region gene 1 isoform 2
[Homo sapiens]
(124 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758069 PREDICTED: similar to FSHD region gene 1 isoform 2 ... 255 7e-69
gi|4758404 FSHD region gene 1 [Homo sapiens] 195 7e-51
gi|239747131 PREDICTED: hypothetical protein XP_002343920 [Homo ... 187 2e-48
gi|239758061 PREDICTED: similar to hCG1992776 [Homo sapiens] 182 6e-47
gi|239747887 PREDICTED: hypothetical protein XP_002346465 [Homo ... 182 6e-47
gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens] 32 0.16
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 30 0.36
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 30 0.36
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 30 0.47
gi|217272804 hyaluronan-mediated motility receptor isoform d [Ho... 29 0.81
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho... 29 0.81
gi|217416398 hyaluronan-mediated motility receptor isoform c [Ho... 29 0.81
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho... 29 0.81
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 28 1.4
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 28 1.4
gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens] 28 1.4
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 28 1.8
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 28 1.8
gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens] 28 2.4
gi|38569484 kinesin family member 21A [Homo sapiens] 28 2.4
gi|82617626 paralemmin 2 isoform b [Homo sapiens] 28 2.4
gi|82524851 paralemmin 2 isoform a [Homo sapiens] 28 2.4
gi|22325356 PALM2-AKAP2 protein isoform 2 [Homo sapiens] 28 2.4
gi|6005709 PALM2-AKAP2 protein isoform 1 [Homo sapiens] 28 2.4
gi|14589862 aspartate beta-hydroxylase isoform d [Homo sapiens] 27 3.1
gi|9910364 aspartate beta-hydroxylase isoform e [Homo sapiens] 27 3.1
gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo... 27 3.1
gi|4507511 TIMP metallopeptidase inhibitor 2 precursor [Homo sap... 27 4.0
gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens] 27 4.0
gi|4506467 radixin [Homo sapiens] 27 4.0
>gi|239758069 PREDICTED: similar to FSHD region gene 1 isoform 2
[Homo sapiens]
Length = 124
Score = 255 bits (651), Expect = 7e-69
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MREPIYMHLTMVFLPWELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRS 60
MREPIYMHLTMVFLPWELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRS
Sbjct: 1 MREPIYMHLTMVFLPWELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRS 60
Query: 61 CAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHET 120
CAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHET
Sbjct: 61 CAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHET 120
Query: 121 LLDR 124
LLDR
Sbjct: 121 LLDR 124
>gi|4758404 FSHD region gene 1 [Homo sapiens]
Length = 258
Score = 195 bits (496), Expect = 7e-51
Identities = 100/110 (90%), Positives = 103/110 (93%), Gaps = 1/110 (0%)
Query: 16 WELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP-E 74
WE + GKMALLAS+SCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP E
Sbjct: 138 WEPVFQNGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEE 197
Query: 75 DKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHETLLDR 124
DKGNVKQ EINYVKKFQSFQDHK KISKEDSKILKKA+KDGFLHETLLDR
Sbjct: 198 DKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDR 247
>gi|239747131 PREDICTED: hypothetical protein XP_002343920 [Homo
sapiens]
Length = 156
Score = 187 bits (475), Expect = 2e-48
Identities = 96/103 (93%), Positives = 98/103 (95%), Gaps = 1/103 (0%)
Query: 23 GKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP-EDKGNVKQ 81
GKMALLAS+ CFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP EDKGNVKQ
Sbjct: 45 GKMALLASNGCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQ 104
Query: 82 YEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHETLLDR 124
EINYVKKFQSFQ+HK KISKEDSKILKKAQKDGFL ETLLDR
Sbjct: 105 CEINYVKKFQSFQEHKLKISKEDSKILKKAQKDGFLQETLLDR 147
>gi|239758061 PREDICTED: similar to hCG1992776 [Homo sapiens]
Length = 206
Score = 182 bits (462), Expect = 6e-47
Identities = 95/110 (86%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 16 WELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPE- 74
WE K GKMAL S+SCFIR +EA DIEAKSKTAGEEEMIKIRSCAERETKKKDDIPE
Sbjct: 97 WEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEE 156
Query: 75 DKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHETLLDR 124
DKGN+KQ EINYVKKFQSFQDHK KISKE+SKILKKAQKDGFLHETLLDR
Sbjct: 157 DKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETLLDR 206
>gi|239747887 PREDICTED: hypothetical protein XP_002346465 [Homo
sapiens]
Length = 206
Score = 182 bits (462), Expect = 6e-47
Identities = 95/110 (86%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 16 WELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPE- 74
WE K GKMAL S+SCFIR +EA DIEAKSKTAGEEEMIKIRSCAERETKKKDDIPE
Sbjct: 97 WEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEE 156
Query: 75 DKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHETLLDR 124
DKGN+KQ EINYVKKFQSFQDHK KISKE+SKILKKAQKDGFLHETLLDR
Sbjct: 157 DKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETLLDR 206
>gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens]
Length = 326
Score = 31.6 bits (70), Expect = 0.16
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 52 EEEMIKIRSCAERETKKKDDIPEDKGNVKQYEINY-----------VKKFQSFQDHKPKI 100
+E I ++ E E K D + + K K Y+ NY +K + Q+ I
Sbjct: 31 DEPQINLKRSQENEWVKSDQVKKRKKKRKDYQPNYFLSIPITNKEIIKGIKILQN---AI 87
Query: 101 SKEDSKILKKAQKDGFLHETLL 122
++D ++ K DG H TLL
Sbjct: 88 IQQDERLAKAMVSDGSFHITLL 109
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 30.4 bits (67), Expect = 0.36
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 17 ELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMI-KIRS--------------- 60
EL + + + L + I N+AGD A +++ EE++ KI
Sbjct: 23 ELSSGRNEGQLNGETNTPIEGNQAGDAAASARSLPNEEIVQKIEEVLSGVLDTELRYKPD 82
Query: 61 ---------CAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKA 111
C +T D+IP K + N KK + ++ K K E+S+ K+
Sbjct: 83 LKEGSRKSRCVSVQTDPTDEIPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEESESKTKS 142
Query: 112 QKDG 115
DG
Sbjct: 143 HDDG 146
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 30.4 bits (67), Expect = 0.36
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 17 ELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMI-KIRS--------------- 60
EL + + + L + I N+AGD A +++ EE++ KI
Sbjct: 23 ELSSGRNEGQLNGETNTPIEGNQAGDAAASARSLPNEEIVQKIEEVLSGVLDTELRYKPD 82
Query: 61 ---------CAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKA 111
C +T D+IP K + N KK + ++ K K E+S+ K+
Sbjct: 83 LKEGSRKSRCVSVQTDPTDEIPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEESESKTKS 142
Query: 112 QKDG 115
DG
Sbjct: 143 HDDG 146
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 30.0 bits (66), Expect = 0.47
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 13/71 (18%)
Query: 42 DIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKIS 101
+I+ K KTA ++E ++E KKK + ++K + Q +++ Q +K + S
Sbjct: 223 EIKKKLKTAKKKE--------KKEKKKKQEEEQEKKKLTQ-----IQESQVTSHNKERRS 269
Query: 102 KEDSKILKKAQ 112
K D K+ KK+Q
Sbjct: 270 KRDEKLDKKSQ 280
>gi|217272804 hyaluronan-mediated motility receptor isoform d [Homo
sapiens]
Length = 638
Score = 29.3 bits (64), Expect = 0.81
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 18 LHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKK-KDDIPEDK 76
L +GK+A L I E I+ KS+T E I+ SCA + +K K DI + +
Sbjct: 116 LEESQGKIAQLEGKLVSI---EKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLE 172
Query: 77 GNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQ 112
N+K+ + QS +++ +SK+ + K Q
Sbjct: 173 ENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQ 208
>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
sapiens]
Length = 725
Score = 29.3 bits (64), Expect = 0.81
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 18 LHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKK-KDDIPEDK 76
L +GK+A L I E I+ KS+T E I+ SCA + +K K DI + +
Sbjct: 203 LEESQGKIAQLEGKLVSI---EKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLE 259
Query: 77 GNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQ 112
N+K+ + QS +++ +SK+ + K Q
Sbjct: 260 ENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQ 295
>gi|217416398 hyaluronan-mediated motility receptor isoform c [Homo
sapiens]
Length = 709
Score = 29.3 bits (64), Expect = 0.81
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 18 LHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKK-KDDIPEDK 76
L +GK+A L I E I+ KS+T E I+ SCA + +K K DI + +
Sbjct: 187 LEESQGKIAQLEGKLVSI---EKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLE 243
Query: 77 GNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQ 112
N+K+ + QS +++ +SK+ + K Q
Sbjct: 244 ENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQ 279
>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
sapiens]
Length = 724
Score = 29.3 bits (64), Expect = 0.81
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 18 LHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKK-KDDIPEDK 76
L +GK+A L I E I+ KS+T E I+ SCA + +K K DI + +
Sbjct: 202 LEESQGKIAQLEGKLVSI---EKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLE 258
Query: 77 GNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQ 112
N+K+ + QS +++ +SK+ + K Q
Sbjct: 259 ENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQ 294
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 28.5 bits (62), Expect = 1.4
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 36 RCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQD 95
R E G E K K +EE K R +E KK+ + E + K+ + KK + +D
Sbjct: 149 REKERGKRERKRKKRKKEEREKKRERNRKERKKERERKERRERKKERKKERRKKKERKKD 208
Query: 96 HKPKISKEDSKILKKAQKDGFLHETL 121
K + DS++ + ++ F T+
Sbjct: 209 RKTD-RQTDSQVFRPLRESAFNRVTV 233
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 28.5 bits (62), Expect = 1.4
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 36 RCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP---EDKGNVKQYEINYVKKFQS 92
R N+A + + + +EE K+R E KK D P E K ++K+ +I+ K+ +
Sbjct: 738 RSNKAEKERSLKEKSPKEE--KLRLYKEERKKKSKDRPSKLEKKNDLKEDKISKEKE-KI 794
Query: 93 FQDHKPKISK-----EDSKILKKAQKDGFL 117
F++ K K+ K EDS + K+ FL
Sbjct: 795 FKEDKEKLKKEKVYREDSAFDEYCNKNQFL 824
>gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]
Length = 422
Score = 28.5 bits (62), Expect = 1.4
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 53 EEMIKIRSCAERETKKKDD---IPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILK 109
++ + C + + +D+ +PED ++ YE+ + + + I KE+ IL+
Sbjct: 172 DQPLPAEQCTQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILE 231
Query: 110 KAQKD 114
K +K+
Sbjct: 232 KIKKN 236
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 28.1 bits (61), Expect = 1.8
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 46 KSKTAGEEEMIKIRSCAERETKKK----DDIPEDKGNVKQYEINYVKKFQSFQDHKPKIS 101
K K+ EEE+ K+R AE E +K+ +DI K + Y ++ ++ K
Sbjct: 1152 KQKSRVEEELPKVREAAENELRKQQRNVEDISLQKIRAESEAKQYRRELETIVREKEAAE 1211
Query: 102 KEDSKI----LKKAQKDGFLHETLLD 123
+E ++ ++ K + E LL+
Sbjct: 1212 RELERVRQLTIEAEAKRAAVEENLLN 1237
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 28.1 bits (61), Expect = 1.8
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 46 KSKTAGEEEM--IKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKE 103
K + A +E+ IK ++E KK+ E K K+ VKK ++ K ++ KE
Sbjct: 657 KKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKE 716
Query: 104 DSKILKKAQKD 114
+ K +KK +K+
Sbjct: 717 EKKEVKKEEKE 727
Score = 25.8 bits (55), Expect = 8.9
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 39 EAGDIEAKSKTAGEEEMIKIRSCAERETK-KKDDIPEDKGNVKQYEINYVKKFQSFQDHK 97
+A D++ K A +E+ +K +ETK K +D E+K K+ K ++ K
Sbjct: 624 QATDVKPK---AAKEKTVK------KETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEK 674
Query: 98 PK---ISKEDSKILKKAQK 113
PK + KE K +KK +K
Sbjct: 675 PKKEEVKKEVKKEIKKEEK 693
>gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]
Length = 1233
Score = 27.7 bits (60), Expect = 2.4
Identities = 15/72 (20%), Positives = 34/72 (47%)
Query: 52 EEEMIKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKA 111
E+EM+ + + ++ ++ + +G E N VKK+ ++ K + ++ L+K
Sbjct: 337 EKEMLSVEKARQEFEERMEEESQSQGRDLTLEENQVKKYHRLKEEASKRAATLAQELEKF 396
Query: 112 QKDGFLHETLLD 123
+D + LD
Sbjct: 397 NRDQKADQDRLD 408
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 27.7 bits (60), Expect = 2.4
Identities = 14/63 (22%), Positives = 34/63 (53%)
Query: 52 EEEMIKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKA 111
EE+++ ++ ++D + ++ G+V+ Y KK +S + K + ++ + L+ A
Sbjct: 666 EEKLMMLQHKIRDTQLERDQVLQNLGSVESYSEEKAKKVRSEYEKKLQAMNKELQRLQAA 725
Query: 112 QKD 114
QK+
Sbjct: 726 QKE 728
>gi|82617626 paralemmin 2 isoform b [Homo sapiens]
Length = 379
Score = 27.7 bits (60), Expect = 2.4
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 45 AKSKTAGEEEMIK--IRSCAERETKKKDDIPEDKGNVKQYEINYVK---KFQSFQDHKPK 99
+KSK E+ +++ AE E ++ ED+ VKQ E N + + Q+ + + +
Sbjct: 43 SKSKVLREKWLLQGIPAGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ 102
Query: 100 ISKEDSKILKKAQK 113
IS ++ IL+K ++
Sbjct: 103 ISAKEQIILEKLKE 116
>gi|82524851 paralemmin 2 isoform a [Homo sapiens]
Length = 413
Score = 27.7 bits (60), Expect = 2.4
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 45 AKSKTAGEEEMIK--IRSCAERETKKKDDIPEDKGNVKQYEINYVK---KFQSFQDHKPK 99
+KSK E+ +++ AE E ++ ED+ VKQ E N + + Q+ + + +
Sbjct: 43 SKSKVLREKWLLQGIPAGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ 102
Query: 100 ISKEDSKILKKAQK 113
IS ++ IL+K ++
Sbjct: 103 ISAKEQIILEKLKE 116
>gi|22325356 PALM2-AKAP2 protein isoform 2 [Homo sapiens]
Length = 1090
Score = 27.7 bits (60), Expect = 2.4
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 45 AKSKTAGEEEMIK--IRSCAERETKKKDDIPEDKGNVKQYEINYVK---KFQSFQDHKPK 99
+KSK E+ +++ AE E ++ ED+ VKQ E N + + Q+ + + +
Sbjct: 41 SKSKVLREKWLLQGIPAGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ 100
Query: 100 ISKEDSKILKKAQK 113
IS ++ IL+K ++
Sbjct: 101 ISAKEQIILEKLKE 114
>gi|6005709 PALM2-AKAP2 protein isoform 1 [Homo sapiens]
Length = 1103
Score = 27.7 bits (60), Expect = 2.4
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 45 AKSKTAGEEEMIK--IRSCAERETKKKDDIPEDKGNVKQYEINYVK---KFQSFQDHKPK 99
+KSK E+ +++ AE E ++ ED+ VKQ E N + + Q+ + + +
Sbjct: 41 SKSKVLREKWLLQGIPAGTAEEEEARRRQSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ 100
Query: 100 ISKEDSKILKKAQK 113
IS ++ IL+K ++
Sbjct: 101 ISAKEQIILEKLKE 114
>gi|14589862 aspartate beta-hydroxylase isoform d [Homo sapiens]
Length = 210
Score = 27.3 bits (59), Expect = 3.1
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 43 IEAKSKTAGEEEMIKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISK 102
+E S A + K++ + E KK+ + PE + K E KK +D K +
Sbjct: 78 LEGPSGVAKRKTKAKVKELTKEELKKEKEKPESRKESKNEERKKGKKEDVRKDKKIADAD 137
Query: 103 EDSKILKKAQKD 114
K K +KD
Sbjct: 138 LSRKESPKGKKD 149
>gi|9910364 aspartate beta-hydroxylase isoform e [Homo sapiens]
Length = 225
Score = 27.3 bits (59), Expect = 3.1
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 43 IEAKSKTAGEEEMIKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISK 102
+E S A + K++ + E KK+ + PE + K E KK +D K +
Sbjct: 93 LEGPSGVAKRKTKAKVKELTKEELKKEKEKPESRKESKNEERKKGKKEDVRKDKKIADAD 152
Query: 103 EDSKILKKAQKD 114
K K +KD
Sbjct: 153 LSRKESPKGKKD 164
>gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo
sapiens]
Length = 1905
Score = 27.3 bits (59), Expect = 3.1
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 44 EAKSKTAGEEEMIKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKE 103
+A++K E + +K ++E KKK ++KG KQ ++ K ++ K K+ +
Sbjct: 733 QARNKRKQETKSLK-----QKEAKKKSKAEKEKGKTKQEKLKEKVK----REKKEKVKMK 783
Query: 104 DSKILKKAQ 112
+ + + KA+
Sbjct: 784 EKEEVTKAK 792
>gi|4507511 TIMP metallopeptidase inhibitor 2 precursor [Homo
sapiens]
Length = 220
Score = 26.9 bits (58), Expect = 4.0
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 55 MIKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKI-------------- 100
+I+ ++ +E+E +DI + QYEI +K F+ + I
Sbjct: 44 VIRAKAVSEKEVDSGNDIYGNPIKRIQYEIKQIKMFKGPEKDIEFIYTAPSSAVCGVSLD 103
Query: 101 --SKEDSKILKKAQKDGFLHETLLD 123
K++ I KA+ DG +H TL D
Sbjct: 104 VGGKKEYLIAGKAEGDGKMHITLCD 128
>gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens]
Length = 758
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 65 ETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHETL 121
ET +K D PE K VK+ + + KF K K + +K +K G + E +
Sbjct: 312 ETNRKTDDPEQKAKVKKKKPKLLNKFD-------KTIKAELDAAEKLRKRGKIEEAV 361
>gi|4506467 radixin [Homo sapiens]
Length = 583
Score = 26.9 bits (58), Expect = 4.0
Identities = 13/62 (20%), Positives = 34/62 (54%)
Query: 52 EEEMIKIRSCAERETKKKDDIPEDKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKA 111
EE+ IK + E +T+K ++ +++ K+ K+ ++ ++ K I+K+ + +K
Sbjct: 355 EEQTIKAQKELEEQTRKALELDQERKRAKEEAERLEKERRAAEEAKSAIAKQAADQMKNQ 414
Query: 112 QK 113
++
Sbjct: 415 EQ 416
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,564,158
Number of Sequences: 37866
Number of extensions: 184369
Number of successful extensions: 823
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 76
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.