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Search of human proteins with 239758003
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo
sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo ... 282 7e-77
gi|239758025 PREDICTED: hypothetical protein [Homo sapiens] 228 1e-60
gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo ... 226 4e-60
gi|239758079 PREDICTED: hypothetical protein [Homo sapiens] 217 3e-57
gi|239758019 PREDICTED: hypothetical protein [Homo sapiens] 157 2e-39
gi|239755284 PREDICTED: hypothetical protein [Homo sapiens] 110 3e-25
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 57 3e-09
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens] 53 9e-08
gi|109689695 transient receptor potential cation channel, subfam... 32 0.16
gi|9945320 cyclin L1 [Homo sapiens] 32 0.16
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 31 0.35
gi|4557321 apolipoprotein A-I preproprotein [Homo sapiens] 30 0.45
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens] 29 1.0
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 29 1.0
gi|31542845 gap junction protein, alpha 9, 59kDa [Homo sapiens] 29 1.0
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 29 1.0
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 29 1.3
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 29 1.3
gi|11141889 WW45 protein [Homo sapiens] 28 2.3
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 28 2.3
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 28 2.3
gi|54633319 PDZ domain-containing guanine nucleotide exchange fa... 28 2.9
gi|21071060 SWI/SNF-related matrix-associated actin-dependent re... 28 2.9
gi|187761314 SWI/SNF-related matrix-associated actin-dependent r... 28 2.9
gi|156616271 kinesin family member 19 [Homo sapiens] 28 2.9
gi|23618926 zinc finger protein 559 [Homo sapiens] 27 3.8
gi|219842266 usherin isoform B [Homo sapiens] 27 5.0
gi|190358501 hypothetical protein LOC55435 isoform b [Homo sapiens] 27 5.0
gi|190358499 hypothetical protein LOC55435 isoform a [Homo sapiens] 27 5.0
gi|119120894 Dmx-like 2 [Homo sapiens] 27 6.6
>gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo
sapiens]
Length = 135
Score = 282 bits (721), Expect = 7e-77
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRS 60
MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRS
Sbjct: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRS 60
Query: 61 IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLM 120
IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLM
Sbjct: 61 IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLM 120
Query: 121 ELHGIIIKWNRMVSS 135
ELHGIIIKWNRMVSS
Sbjct: 121 ELHGIIIKWNRMVSS 135
>gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 228 bits (580), Expect = 1e-60
Identities = 112/129 (86%), Positives = 116/129 (89%), Gaps = 9/129 (6%)
Query: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRS 60
MESSSNELNAIIEWSRMESS+NGKEWNHRIESNGINI+WTRMESTSNGIKRNYRMESKR
Sbjct: 1 MESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRI 60
Query: 61 IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLM 120
IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGII ERNRMESS +GNE
Sbjct: 61 IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNE------ 114
Query: 121 ELHGIIIKW 129
III+W
Sbjct: 115 ---WIIIEW 120
Score = 36.6 bits (83), Expect = 0.006
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 100 ITERNRMESSSNGNERSHHLMELHGIIIKWNRMVSS 135
I E +RMESS+NG E +H + E +GI I+W RM S+
Sbjct: 11 IIEWSRMESSANGKEWNHRI-ESNGINIEWTRMEST 45
>gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo
sapiens]
Length = 127
Score = 226 bits (576), Expect = 4e-60
Identities = 108/127 (85%), Positives = 115/127 (90%)
Query: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRS 60
MESSSNELNA+IEWSRMESSSNG EWNHRIESNGI I+W RMESTSNG KRNYRMESKR
Sbjct: 1 MESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI 60
Query: 61 IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLM 120
IEWTRMESSNGMEWNNP T+MQSSS+ IEWNHRMDSNGII ERNRME SSNGNE +HH M
Sbjct: 61 IEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQM 120
Query: 121 ELHGIII 127
E+ G+II
Sbjct: 121 EMKGVII 127
Score = 57.8 bits (138), Expect = 3e-09
Identities = 47/133 (35%), Positives = 58/133 (43%), Gaps = 63/133 (47%)
Query: 42 MESTSNGIKRNYRMESKRSIEWTRMESS-NGMEWNNPRTRMQSSSYRIEWNHRMDSNGII 100
MES+SN E IEW+RMESS NGME WNHR++SNGII
Sbjct: 1 MESSSN--------ELNAVIEWSRMESSSNGME----------------WNHRIESNGII 36
Query: 101 TERNRMESSSNGNERSH--------------------------------------HLMEL 122
E NRMES+SNG +R++ H M+
Sbjct: 37 IEWNRMESTSNGKKRNYRMESKRIIEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDS 96
Query: 123 HGIIIKWNRMVSS 135
+GIII+ NRM S
Sbjct: 97 NGIIIERNRMEPS 109
>gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 217 bits (552), Expect = 3e-57
Identities = 107/127 (84%), Positives = 112/127 (88%)
Query: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRS 60
MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGI I+W RM ST NG KRNYRMESKR
Sbjct: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI 60
Query: 61 IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLM 120
E TRMESSNGMEWNNP TRMQSSS IEWNHRMDSNGII ERNRMESSS+GNE +HH M
Sbjct: 61 FERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRM 120
Query: 121 ELHGIII 127
E+ G+II
Sbjct: 121 EMKGVII 127
Score = 45.1 bits (105), Expect = 2e-05
Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Query: 100 ITERNRMESSSNGNERSHHLMELHGIIIKWNRMVSS 135
I E +RMESSSNG E +H + E +GIII+WNRMVS+
Sbjct: 11 IIEWSRMESSSNGKEWNHRI-ESNGIIIEWNRMVST 45
>gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 157 bits (398), Expect = 2e-39
Identities = 75/86 (87%), Positives = 79/86 (91%)
Query: 42 MESTSNGIKRNYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIT 101
MESTSNGIKRNYRMESKR IEWTRMESSNGMEWNN RTR QSSSYRIEWNHRMDSNGII
Sbjct: 1 MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
Query: 102 ERNRMESSSNGNERSHHLMELHGIII 127
ERNRMESSS+GNE +HH ME+ G+II
Sbjct: 61 ERNRMESSSDGNEWNHHRMEMKGVII 86
Score = 53.5 bits (127), Expect = 5e-08
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 24/82 (29%)
Query: 1 MESSSN--------ELNAIIEWSRMESSSNGK---------------EWNHRIESNGINI 37
MES+SN E IIEW+RMESS+ + EWNHR++SNGI I
Sbjct: 1 MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
Query: 38 KWTRMESTSNGIKRN-YRMESK 58
+ RMES+S+G + N +RME K
Sbjct: 61 ERNRMESSSDGNEWNHHRMEMK 82
>gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]
Length = 62
Score = 110 bits (275), Expect = 3e-25
Identities = 52/62 (83%), Positives = 55/62 (88%)
Query: 66 MESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLMELHGI 125
MESSNGMEWNNP TRMQSS RIEWNHRMDSNGII ERNRMESSSNGNE +HH ME+ G+
Sbjct: 1 MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60
Query: 126 II 127
II
Sbjct: 61 II 62
Score = 53.9 bits (128), Expect = 4e-08
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 10/63 (15%)
Query: 1 MESSSNELNAIIEWS----RMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRN-YRM 55
MESS+ +EW+ RM+SS N EWNHR++SNGI I+ RMES+SNG + N +RM
Sbjct: 1 MESSNG-----MEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRM 55
Query: 56 ESK 58
E K
Sbjct: 56 EMK 58
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 57.4 bits (137), Expect = 3e-09
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 93 RMDSNGIITERNRMESSSNGNERSHHLMELHGIIIKWNRMVSS 135
+M+ NGII E NRME SSNG R HH ME +G+II+WNR SS
Sbjct: 404 KMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVIIEWNRKASS 446
Score = 53.1 bits (126), Expect = 7e-08
Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 16/76 (21%)
Query: 29 RIESNGINIKWTRMESTSNGIKR-NYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYR 87
++E NGI I+W RME +SNGI R ++RME I +EWN R SS
Sbjct: 404 KMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVI----------IEWN----RKASSCNG 449
Query: 88 IEWNH-RMDSNGIITE 102
IEW+H RMDS GII E
Sbjct: 450 IEWHHQRMDSKGIIIE 465
Score = 51.6 bits (122), Expect = 2e-07
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 11 IIEWSRMESSSNG-KEWNHRIESNGINIKWTRMESTSNGIK-RNYRMESK 58
IIEW+RME SSNG +HR+E NG+ I+W R S+ NGI+ + RM+SK
Sbjct: 411 IIEWNRMELSSNGINRDHHRMEPNGVIIEWNRKASSCNGIEWHHQRMDSK 460
Score = 47.4 bits (111), Expect = 4e-06
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 16/69 (23%)
Query: 61 IEWTRME-SSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHL 119
IEW RME SSNG+ ++ HRM+ NG+I E NR SS NG E H
Sbjct: 412 IEWNRMELSSNGINRDH---------------HRMEPNGVIIEWNRKASSCNGIEWHHQR 456
Query: 120 MELHGIIIK 128
M+ GIII+
Sbjct: 457 MDSKGIIIE 465
>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 296
Score = 52.8 bits (125), Expect = 9e-08
Identities = 32/67 (47%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
Query: 7 ELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRN-YRMESKRSIEWTR 65
E NAIIEW+R HR+ESN I IKW RME SNG++ N ++MES IEW R
Sbjct: 2 ESNAIIEWNR-----------HRMESNAIIIKWNRME--SNGVEWNHHQMESSGIIEWIR 48
Query: 66 MESSNGM 72
+ M
Sbjct: 49 VSVQTAM 55
Score = 47.4 bits (111), Expect = 4e-06
Identities = 28/46 (60%), Positives = 33/46 (71%), Gaps = 4/46 (8%)
Query: 88 IEWN-HRMDSNGIITERNRMESSSNGNERSHHLMELHGIIIKWNRM 132
IEWN HRM+SN II + NRME SNG E +HH ME G II+W R+
Sbjct: 7 IEWNRHRMESNAIIIKWNRME--SNGVEWNHHQMESSG-IIEWIRV 49
Score = 30.0 bits (66), Expect = 0.59
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 13/42 (30%)
Query: 94 MDSNGIITERNRMESSSNGNERSHHLMELHGIIIKWNRMVSS 135
M+SN II E + H ME + IIIKWNRM S+
Sbjct: 1 MESNAII-------------EWNRHRMESNAIIIKWNRMESN 29
>gi|109689695 transient receptor potential cation channel, subfamily
M, member 8 [Homo sapiens]
Length = 1104
Score = 32.0 bits (71), Expect = 0.16
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 2 ESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRSI 61
ES L I+E S + + +E I SN I+ + STS K N+ + K +
Sbjct: 375 ESWIKWLKEILECSHLLTVIKMEEAGDEIVSNAISYALYKAFSTSEQDKDNWNGQLKLLL 434
Query: 62 EWTRMESSNGMEWNNPR 78
EW +++ +N + N R
Sbjct: 435 EWNQLDLANDEIFTNDR 451
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 32.0 bits (71), Expect = 0.16
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 35 INIKWTRME-----STSNGIKRNYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYRIE 89
IN+K + E S R +SKRS R S + R+R +S + R
Sbjct: 356 INVKTVKKEPEDRQQASKSPYNGVRKDSKRS----RNSRSASRSRSRTRSRSRSHTPRRH 411
Query: 90 WNHRMDSNGIITERNRMESSSNG-NERSHH 118
+N+R +G + R+R S S+ + R HH
Sbjct: 412 YNNRRSRSGTYSSRSRSRSRSHSESPRRHH 441
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 30.8 bits (68), Expect = 0.35
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 2 ESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESK-RS 60
ESSS+E SR + S + R +S + TR S S+ R+ S RS
Sbjct: 1295 ESSSDEQTP----SRDDDSQSRSPSRSRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRS 1350
Query: 61 IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSS 110
++R S ++ RTR +SSSYR +HR S R+R SSS
Sbjct: 1351 RSYSRSRSRGW--YSRGRTRSRSSSYRSYKSHRTSS------RSRSRSSS 1392
>gi|4557321 apolipoprotein A-I preproprotein [Homo sapiens]
Length = 267
Score = 30.4 bits (67), Expect = 0.45
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 15 SRMESSSNGKEWNHRIESN--GINIKWTRMESTSNGIKRNYRMESKRSIEWTRMESSNGM 72
S+ E S+ GK+ N ++ N + ++++ + + + ++ E R E S +
Sbjct: 55 SQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDL 114
Query: 73 EWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLME 121
E + + ++ +W M+ E R E ++ H L E
Sbjct: 115 EEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQE 163
>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
Length = 334
Score = 29.3 bits (64), Expect = 1.0
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 15 SRMESSSNGKEWNHRI---ESNGINIKWTR---MESTSNGIKRNYRMESKRSIEWTRMES 68
S SSS+ + ++ + +S + W+R S S +R +R S S R S
Sbjct: 24 SSSSSSSDSRTYSRKKGGRKSRSKSRSWSRDLQPRSHSYDRRRRHRSSSSSSYGSRRKRS 83
Query: 69 SNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHH 118
+ R+R + SYR++ + R R+ S S +ERS H
Sbjct: 84 RS-------RSRGRGKSYRVQRSRSKSRTRRSRSRPRLRSHSRSSERSSH 126
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 29.3 bits (64), Expect = 1.0
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 15 SRMESSSNGK-EWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRSIEWTRMESSNGME 73
SR SSS+G N R S + + S+S + + R S + + S ++
Sbjct: 508 SRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTIK 567
Query: 74 WNNPRTRMQSSSYRIEWN---------HRMDSNGIITERNRMESSSNGNERS 116
R+R S +IE N R + N I ER R S S RS
Sbjct: 568 ARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRS 619
>gi|31542845 gap junction protein, alpha 9, 59kDa [Homo sapiens]
Length = 515
Score = 29.3 bits (64), Expect = 1.0
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 20 SSNGKEWNHRI---ESNGINIKWTRMESTSNGIKRNYRMESKRSIEWTRMESSNGMEWNN 76
SSN + H+I E NG N + E+ KRNY RSI ++ N M +
Sbjct: 347 SSNNNKDTHKIFGKELNG-NQLMEKRETEGKDSKRNYYSRGHRSIPGVAIDGENNMR-QS 404
Query: 77 PRTRMQSSSYRIEWNHR--MDSNGIITERNRMESSSNGN 113
P+T + S +W R + G TE S GN
Sbjct: 405 PQT-VFSLPANCDWKPRWLRATWGSSTEHENRGSPPKGN 442
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 29.3 bits (64), Expect = 1.0
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 15 SRMESSSNGK-EWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRSIEWTRMESSNGME 73
SR SSS+G N R S + + S+S + + R S + + S ++
Sbjct: 508 SRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTIK 567
Query: 74 WNNPRTRMQSSSYRIEWN---------HRMDSNGIITERNRMESSSNGNERS 116
R+R S +IE N R + N I ER R S S RS
Sbjct: 568 ARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRS 619
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 28.9 bits (63), Expect = 1.3
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 15 SRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRSIEWTRMESSNGMEW 74
S+ +SS K H + + + R+ S+ NG R+ R E K S + S +
Sbjct: 16 SKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERR 75
Query: 75 NNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNER 115
+ R+R + S R R S ER + S S +R
Sbjct: 76 HRSRSRERKKS-RSRSRERKKSRSRSRERKKSRSRSRERKR 115
Score = 27.3 bits (59), Expect = 3.8
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 16 RMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESK-----RSIEWTRMES-S 69
R+ SS NG++ + R E R S S +R +R S+ RS R +S S
Sbjct: 42 RLNSSENGEDRHKRKERKSSR---GRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRS 98
Query: 70 NGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHL 119
E R+R + RI R S R+R + S +R +
Sbjct: 99 RSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRI 148
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 28.9 bits (63), Expect = 1.3
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 15 SRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRSIEWTRMESSNGMEW 74
S+ +SS K H + + + R+ S+ NG R+ R E K S + S +
Sbjct: 75 SKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERR 134
Query: 75 NNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNER 115
+ R+R + S R R S ER + S S +R
Sbjct: 135 HRSRSRERKKS-RSRSRERKKSRSRSRERKKSRSRSRERKR 174
Score = 27.3 bits (59), Expect = 3.8
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 16 RMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESK-----RSIEWTRMES-S 69
R+ SS NG++ + R E R S S +R +R S+ RS R +S S
Sbjct: 101 RLNSSENGEDRHKRKERKSSR---GRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRS 157
Query: 70 NGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHL 119
E R+R + RI R S R+R + S +R +
Sbjct: 158 RSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRI 207
>gi|11141889 WW45 protein [Homo sapiens]
Length = 383
Score = 28.1 bits (61), Expect = 2.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 17 MESSSNGKEWNHRIESNGINIKWTRMESTSNG 48
++ ++N W+H +E G+ W R+ES+ G
Sbjct: 218 IDHNTNTTHWSHPLEREGLPPGWERVESSEFG 249
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 28.1 bits (61), Expect = 2.3
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 2 ESSSNELNAIIEWSRMESSSN-----------GKEWNHRIESNGINIKWTRMESTSNGIK 50
ESSS E ++ S +S+N KE + I + N + + +G +
Sbjct: 695 ESSSEESDSSSISSHSSASANDVRKKGHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQ 754
Query: 51 RNYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSS 110
R E +R E R ++S+G W +P T+ S + +ERN +
Sbjct: 755 ET-RTERERRSEKHRDQNSSGSNWRDPITKYTS------------DKDVPSERNNYSRVA 801
Query: 111 NGNERSHHL 119
N ++ H+
Sbjct: 802 NDRDQEMHI 810
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 28.1 bits (61), Expect = 2.3
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 20/122 (16%)
Query: 18 ESSSNGKEWNHRIESNGINIKWTRM---ESTSNGIKRNYRMESKRSIEWTRMESSNGMEW 74
+ SN + R + + KWT + STS KR+ ++S S + T SS+G
Sbjct: 87 DEKSNPNFFEQRHGGSHQSSKWTPVGPAPSTSQSQKRSSGLQSGHSSQRTSAGSSSGTNS 146
Query: 75 NNPRTRMQS-----SSYRIEWNH-------RMDSNG---IITERNRMESSSNGNERSHHL 119
+ R +S SS R + H R S G ++ N S S+GN+ HH
Sbjct: 147 SGQRHDRESYNNSGSSSRKKGQHGSEHSKSRSSSPGKPQAVSSLNSSHSRSHGND--HHS 204
Query: 120 ME 121
E
Sbjct: 205 KE 206
>gi|54633319 PDZ domain-containing guanine nucleotide exchange factor
I [Homo sapiens]
Length = 1601
Score = 27.7 bits (60), Expect = 2.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 39 WTRMESTSNGIKRNYRMESKRSIEWTRMESSNGME 73
WT S S+ + NY +R +E T ESS G++
Sbjct: 1433 WTSSSSLSDTYEPNYGTVKRRVLESTPAESSEGLD 1467
>gi|21071060 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 27.7 bits (60), Expect = 2.9
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 50 KRNYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESS 109
+++ R S SI ++ G N PR + S+ G+I ++ + SS
Sbjct: 31 EQHQRTSSGTSIAGNPFQAKQGPSQNFPRESCKPVSH-----------GVIFKQQNLSSS 79
Query: 110 SNGNERSH--HLMELHGI 125
SN ++R H H + GI
Sbjct: 80 SNADQRPHDSHSFQAKGI 97
>gi|187761314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 27.7 bits (60), Expect = 2.9
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 50 KRNYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESS 109
+++ R S SI ++ G N PR + S+ G+I ++ + SS
Sbjct: 31 EQHQRTSSGTSIAGNPFQAKQGPSQNFPRESCKPVSH-----------GVIFKQQNLSSS 79
Query: 110 SNGNERSH--HLMELHGI 125
SN ++R H H + GI
Sbjct: 80 SNADQRPHDSHSFQAKGI 97
>gi|156616271 kinesin family member 19 [Homo sapiens]
Length = 998
Score = 27.7 bits (60), Expect = 2.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 19 SSSNGKEWNHRIESNGINIK-WTRMESTSNGIKRNYRMESKRSIEWTRMESSNGMEWNNP 77
SSS G+ + + +G + W R + S G KR +E+KR +R G ++P
Sbjct: 847 SSSTGEAPSRAVGHHGDGPRPWLRGQKKSLGKKREESLEAKRRKRRSRSFEVTGQGLSHP 906
Query: 78 RTRM 81
+T +
Sbjct: 907 KTHL 910
>gi|23618926 zinc finger protein 559 [Homo sapiens]
Length = 538
Score = 27.3 bits (59), Expect = 3.8
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 38 KWTRMESTSNGIKRNYRMESKRSIEWTRMESSNGMEWNNPRTRM----QSSSYRIEWNH 92
+WT ++ T + R+ +E+ +++ ES +W+ P+ SS +E NH
Sbjct: 27 EWTLLDQTQRNLYRDVMLENYKNLVAVDWESHINTKWSAPQQNFLQGKTSSVVEMERNH 85
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 26.9 bits (58), Expect = 5.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 81 MQSSSYRIEWNHRMDSNGIITERN-----RMESSSNGNERSHHLMELH 123
++S + W H SNG+IT N R+ + GN + +M LH
Sbjct: 2544 VKSRMMLVTWQHPRKSNGVITHYNIYLHGRLYLRTPGNVTNCTVMHLH 2591
>gi|190358501 hypothetical protein LOC55435 isoform b [Homo sapiens]
Length = 269
Score = 26.9 bits (58), Expect = 5.0
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 31 ESNGINIKWTRMESTSNGIKRNYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYRIEW 90
+S ++++W E + + R +++ I ++ SN +NP T S +EW
Sbjct: 169 DSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNP-TSASDDSNGLEW 227
Query: 91 NH-----RMDSNG 98
+ MD NG
Sbjct: 228 ENDFVSAEMDDNG 240
>gi|190358499 hypothetical protein LOC55435 isoform a [Homo sapiens]
Length = 302
Score = 26.9 bits (58), Expect = 5.0
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 31 ESNGINIKWTRMESTSNGIKRNYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYRIEW 90
+S ++++W E + + R +++ I ++ SN +NP T S +EW
Sbjct: 202 DSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNP-TSASDDSNGLEW 260
Query: 91 NH-----RMDSNG 98
+ MD NG
Sbjct: 261 ENDFVSAEMDDNG 273
>gi|119120894 Dmx-like 2 [Homo sapiens]
Length = 3036
Score = 26.6 bits (57), Expect = 6.6
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 41 RMESTSNGIKRNYRMESKRSIEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDS 96
RM+ + K IEW+ + SS +W+ P ++ ++W DS
Sbjct: 1930 RMDDVPSHSKALSDGNGSSGIEWSNVTSSQ-YDWSQPIVKVDEEPLNLDWGEDHDS 1984
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.121 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,697,855
Number of Sequences: 37866
Number of extensions: 164010
Number of successful extensions: 516
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 60
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.