Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF559 Sequence: fasta or formatted (538aa) NCBI GI: 23618926
Description:

zinc finger protein 559

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         21           1
 C cysteine            6.3         34           1
 D aspartate           2.4         13           1
 E glutamate           8.6         46           2
 F phenylalanine       5.8         31           1
 G glycine             5.2         28           2
 H histidine           6.7         36           1
 I isoleucine          2.8         15           1
 K lysine              9.1         49           2
 L leucine             6.3         34           2
 M methionine          1.3          7           1
 N asparagine          3.3         18           1
 P proline             3.3         18           1
 Q glutamine           4.6         25           2
 R arginine            5.8         31           2
 S serine              8.6         46           3
 T threonine           7.6         41           1
 V valine              4.1         22           2
 W tryptophan          0.7          4           1
 Y tyrosine            3.5         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 559 
ZNF426                0.432   zinc finger protein 426 
ZNF846                0.429   zinc finger protein 846 
ZNF778                0.419   zinc finger protein 778 
ZNF420                0.411   zinc finger protein 420 
ZNF571                0.398   zinc finger protein 571 
ZNF699                0.398   zinc finger protein 699 
ZNF709                0.396   zinc finger protein 709 isoform a 
ZNF30                 0.395   zinc finger protein 30 isoform a 
ZNF30                 0.395   zinc finger protein 30 isoform a 
ZNF30                 0.394   zinc finger protein 30 isoform b 
ZNF791                0.391   zinc finger protein 791 
ZNF266                0.382   zinc finger protein 266 
ZNF266                0.382   zinc finger protein 266 
ZNF14                 0.380   zinc finger protein 14 
ZNF135                0.379   zinc finger protein 135 
ZNF569                0.376   zinc finger protein 569 
ZNF595                0.376   zinc finger protein 595 
LOC100287429          0.374   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.374   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.374   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.374   zinc finger protein 84 
ZNF84                 0.374   zinc finger protein 84 
ZNF568                0.374   zinc finger protein 568 
ZNF184                0.374   zinc finger protein 184 
ZNF91                 0.374   zinc finger protein 91 
ZNF43                 0.372   zinc finger protein 43 
ZNF560                0.372   zinc finger protein 560 
ZNF93                 0.370   zinc finger protein 93 
ZNF658                0.369   zinc finger protein 658 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press