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Search of human proteins with 239757997
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757997 PREDICTED: hypothetical protein [Homo sapiens]
(50 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757997 PREDICTED: hypothetical protein [Homo sapiens] 108 7e-25
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 108 7e-25
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 106 3e-24
gi|154937324 hypothetical protein LOC440295 [Homo sapiens] 106 3e-24
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 103 3e-23
gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo sap... 103 3e-23
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 29 0.70
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 29 0.70
gi|10864053 myozenin 1 [Homo sapiens] 28 1.6
gi|44662807 hypothetical protein LOC388407 [Homo sapiens] 28 1.6
gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens] 27 4.5
gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens] 27 4.5
gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo ... 27 4.5
gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo ... 27 4.5
gi|40288197 GATA binding protein 6 [Homo sapiens] 27 4.5
gi|197304710 hypothetical protein LOC84310 [Homo sapiens] 27 4.5
gi|197304708 hypothetical protein LOC84310 [Homo sapiens] 27 4.5
gi|14150149 hypothetical protein LOC84310 [Homo sapiens] 27 4.5
gi|23308699 transcription factor MAFB [Homo sapiens] 26 5.9
gi|169215211 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|89058383 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|89058207 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|197383784 zinc finger protein 213 [Homo sapiens] 26 5.9
gi|32698678 zinc finger protein 213 [Homo sapiens] 26 5.9
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 26 5.9
gi|239756120 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo ... 26 7.7
gi|239749957 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 26 7.7
gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo ... 26 7.7
>gi|239757997 PREDICTED: hypothetical protein [Homo sapiens]
Length = 50
Score = 108 bits (271), Expect = 7e-25
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 1 MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 50
MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII
Sbjct: 1 MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 50
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 108 bits (271), Expect = 7e-25
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 1 MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 50
MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII
Sbjct: 474 MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 523
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 106 bits (265), Expect = 3e-24
Identities = 49/50 (98%), Positives = 49/50 (98%)
Query: 1 MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 50
MCGQAGWTPQEHPGL GEAVGTGEAAGGAGEAACHSFRAAENRELNITII
Sbjct: 383 MCGQAGWTPQEHPGLSGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 432
>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
Length = 432
Score = 106 bits (265), Expect = 3e-24
Identities = 49/50 (98%), Positives = 49/50 (98%)
Query: 1 MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 50
MCGQAGWTPQEHPGL GEAVGTGEAAGGAGEAACHSFRAAENRELNITII
Sbjct: 383 MCGQAGWTPQEHPGLSGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 432
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 103 bits (257), Expect = 3e-23
Identities = 48/50 (96%), Positives = 48/50 (96%)
Query: 1 MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 50
MCGQAGWTPQEHPGL GEAVGTGEAAGGA EAACHSFRAAENRELNITII
Sbjct: 383 MCGQAGWTPQEHPGLSGEAVGTGEAAGGAEEAACHSFRAAENRELNITII 432
>gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 479
Score = 103 bits (257), Expect = 3e-23
Identities = 48/50 (96%), Positives = 48/50 (96%)
Query: 1 MCGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 50
MCGQAGWTPQEHPGL GEAVGTGEAAGGA EAACHSFRAAENRELNITII
Sbjct: 430 MCGQAGWTPQEHPGLSGEAVGTGEAAGGAEEAACHSFRAAENRELNITII 479
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 11 EHPGLGGEAVGTGEAAGGAGEAACHS 36
+HPG GG G G AGG G +A +S
Sbjct: 745 KHPGNGGGGGGGGGGAGGGGPSASNS 770
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 11 EHPGLGGEAVGTGEAAGGAGEAACHS 36
+HPG GG G G AGG G +A +S
Sbjct: 726 KHPGNGGGGGGGGGGAGGGGPSASNS 751
>gi|10864053 myozenin 1 [Homo sapiens]
Length = 299
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 3 GQAGWTPQEHPGLGGEAVGTGEAAGGAG 30
GQ G Q H G G A GTG AG AG
Sbjct: 125 GQYGSDQQHHLGSGSGAGGTGGPAGQAG 152
>gi|44662807 hypothetical protein LOC388407 [Homo sapiens]
Length = 251
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 5 AGWTPQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAENRELNI 47
+G P+ PGLG + TG G AG+ A RE I
Sbjct: 170 SGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREI 212
>gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens]
Length = 465
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 14 GLGGEAVGTGEAAGGAGEAACHSFRAAENRELNITII 50
G+G A G GE GA +A+ +R +NRE T +
Sbjct: 356 GIGTPAAGPGEERVGAAKAS--RWRGRQNREKRFTFV 390
>gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]
Length = 410
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 3 GQAGWTPQEHPGLGGEAVGTGEAAGGAGEAA 33
G AG P+ G G AVGTG GGA A
Sbjct: 39 GGAGLHPRWVWGGSGGAVGTGRRGGGAARPA 69
>gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo
sapiens]
Length = 410
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 3 GQAGWTPQEHPGLGGEAVGTGEAAGGAGEAA 33
G AG P+ G G AVGTG GGA A
Sbjct: 39 GGAGLHPRWVWGGSGGAVGTGRRGGGAARPA 69
>gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo
sapiens]
Length = 410
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 3 GQAGWTPQEHPGLGGEAVGTGEAAGGAGEAA 33
G AG P+ G G AVGTG GGA A
Sbjct: 39 GGAGLHPRWVWGGSGGAVGTGRRGGGAARPA 69
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 14 GLGGEAVGTGEAA-GGAGEAACH 35
G GG A G G A GGAG AA H
Sbjct: 236 GSGGGAAGGGAAGPGGAGSAAAH 258
>gi|197304710 hypothetical protein LOC84310 [Homo sapiens]
Length = 194
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 11 EHPGLGGEAVGTGEAAGGAGEA 32
E P LG EA +GE AG GEA
Sbjct: 25 EGPLLGPEAAPSGEGAGSKGEA 46
>gi|197304708 hypothetical protein LOC84310 [Homo sapiens]
Length = 194
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 11 EHPGLGGEAVGTGEAAGGAGEA 32
E P LG EA +GE AG GEA
Sbjct: 25 EGPLLGPEAAPSGEGAGSKGEA 46
>gi|14150149 hypothetical protein LOC84310 [Homo sapiens]
Length = 194
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 11 EHPGLGGEAVGTGEAAGGAGEA 32
E P LG EA +GE AG GEA
Sbjct: 25 EGPLLGPEAAPSGEGAGSKGEA 46
>gi|23308699 transcription factor MAFB [Homo sapiens]
Length = 323
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 9 PQEHPGLGGEAVGTGEAAGGAG 30
P HPG G A + AAGG G
Sbjct: 184 PTSHPGPGPHATASATAAGGNG 205
>gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 9 PQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAEN 42
P PG G G + AGGA + C A+ N
Sbjct: 8 PPSQPGRWGAGTGDADEAGGATGSLCQRGAASAN 41
>gi|89058383 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 9 PQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAEN 42
P PG G G + AGGA + C A+ N
Sbjct: 8 PPSQPGRWGAGTGDADEAGGATGSLCQRGAASAN 41
>gi|89058207 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 9 PQEHPGLGGEAVGTGEAAGGAGEAACHSFRAAEN 42
P PG G G + AGGA + C A+ N
Sbjct: 8 PPSQPGRWGAGTGDADEAGGATGSLCQRGAASAN 41
>gi|197383784 zinc finger protein 213 [Homo sapiens]
Length = 459
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 6 GWTPQEHPGLGGEAVGTGE 24
GW ++HPG G EAV E
Sbjct: 103 GWVREQHPGSGEEAVALVE 121
>gi|32698678 zinc finger protein 213 [Homo sapiens]
Length = 459
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 6 GWTPQEHPGLGGEAVGTGE 24
GW ++HPG G EAV E
Sbjct: 103 GWVREQHPGSGEEAVALVE 121
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 2 CGQAGWTPQEHPGLGGEAVGTGEAAGGAGEAAC 34
CG G + GG G G GG G + C
Sbjct: 99 CGSCGGSKGGCGSCGGSKGGCGSGCGGCGSSCC 131
>gi|239756120 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 10 QEHPGLGGEAVGTGEAAGGA--GEAACHSFRAA 40
Q HP G A G G AA GA G++ C S AA
Sbjct: 28 QSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA 60
>gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo
sapiens]
Length = 166
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 10 QEHPGLGGEAVGTGEAAGGA--GEAACHSFRAA 40
Q HP G A G G AA GA G++ C S AA
Sbjct: 28 QSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA 60
>gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 4 QAGWTPQEHPGLGGEAVGTGE 24
Q G PQ HP LG VG+ +
Sbjct: 412 QVGCLPQAHPDLGASGVGSAK 432
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 5 AGWTPQEHPGLGGEAVG-----TGEAAGGAGEAAC 34
A W P+ H G A+G G GAG AAC
Sbjct: 209 APWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAAC 243
>gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo
sapiens]
Length = 166
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 10 QEHPGLGGEAVGTGEAAGGA--GEAACHSFRAA 40
Q HP G A G G AA GA G++ C S AA
Sbjct: 28 QSHPENGVSAPGKGTAAKGARGGQSRCCSVVAA 60
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,268,076
Number of Sequences: 37866
Number of extensions: 76543
Number of successful extensions: 518
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 40
length of query: 50
length of database: 18,247,518
effective HSP length: 24
effective length of query: 26
effective length of database: 17,338,734
effective search space: 450807084
effective search space used: 450807084
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.