Guide to the Human Genome
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Name: LOC100293745 Sequence: fasta or formatted (146aa) NCBI GI: 239757920
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         10           1
 C cysteine            2.1          3           1
 D aspartate           1.4          2           1
 E glutamate           9.6         14           2
 F phenylalanine       3.4          5           3
 G glycine            11.6         17           2
 H histidine           2.1          3           1
 I isoleucine          0.7          1           1
 K lysine              8.2         12           1
 L leucine             6.2          9           1
 M methionine          2.1          3           2
 N asparagine          0.7          1           1
 P proline             6.2          9           1
 Q glutamine           6.2          9           2
 R arginine           13.0         19           2
 S serine             11.0         16           1
 T threonine           2.7          4           1
 V valine              2.1          3           1
 W tryptophan          2.1          3           1
 Y tyrosine            2.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291297          1.000   PREDICTED: hypothetical protein XP_002348270 
LOC100289120          1.000   PREDICTED: hypothetical protein XP_002343892 
MAGI1                 0.032   membrane associated guanylate kinase, WW and PDZ dom...
SFRS4                 0.029   splicing factor, arginine/serine-rich 4 
KIAA1853              0.029   KIAA1853 protein 
H1FOO                 0.025   H1 histone family, member O, oocyte-specific 
LOC100292370          0.022   PREDICTED: hypothetical protein 
CHD3                  0.022   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.022   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.022   chromodomain helicase DNA binding protein 3 isoform...
LOC100291995          0.018   PREDICTED: hypothetical protein XP_002345272 
LOC100289978          0.018   PREDICTED: hypothetical protein XP_002348035 
HRNR                  0.018   hornerin 
LOC100292188          0.014   PREDICTED: hypothetical protein 
LOC100288824          0.014   PREDICTED: hypothetical protein 
LOC100288824          0.014   PREDICTED: hypothetical protein XP_002343711 
CCDC45                0.014   coiled-coil domain containing 45 
LOC100291609          0.011   PREDICTED: hypothetical protein XP_002346061 
LOC100291121          0.011   PREDICTED: hypothetical protein XP_002346953 
LOC100287259          0.011   PREDICTED: hypothetical protein XP_002342817 
LOC100287259          0.011   PREDICTED: hypothetical protein 
C6orf15               0.011   STG protein 
LOC100293229          0.011   PREDICTED: hypothetical protein 
LOC100288716          0.011   PREDICTED: hypothetical protein 
LOC100288716          0.011   PREDICTED: hypothetical protein XP_002342991 
RASSF7                0.011   Ras association (RalGDS/AF-6) domain family (N-term...
RASSF7                0.011   Ras association (RalGDS/AF-6) domain family (N-term...
RASSF7                0.011   Ras association (RalGDS/AF-6) domain family (N-termin...
RSRC1                 0.011   arginine/serine-rich coiled-coil 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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