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Search of human proteins with 239757890
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757890 PREDICTED: similar to family with sequence
similarity 70, member A [Homo sapiens]
(377 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757890 PREDICTED: similar to family with sequence similari... 769 0.0
gi|157388933 hypothetical protein LOC55026 isoform 2 [Homo sapiens] 667 0.0
gi|157388931 hypothetical protein LOC55026 isoform 1 [Homo sapiens] 654 0.0
gi|32699048 family with sequence similarity 70, member B [Homo s... 307 9e-84
gi|157388935 hypothetical protein LOC55026 isoform 3 [Homo sapiens] 278 8e-75
gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo ... 72 1e-12
gi|59806357 submaxillary gland androgen regulated protein 3 homo... 45 1e-04
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 42 0.001
gi|55750053 atrophin-1 [Homo sapiens] 40 0.004
gi|55750041 atrophin-1 [Homo sapiens] 40 0.004
gi|150417989 cyclin K isoform 1 [Homo sapiens] 39 0.008
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 39 0.010
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 38 0.013
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 36 0.050
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 36 0.050
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 35 0.11
gi|149944516 tet oncogene family member 3 [Homo sapiens] 35 0.14
gi|51173727 Sma- and Mad-related protein 1 [Homo sapiens] 34 0.25
gi|5174509 Sma- and Mad-related protein 1 [Homo sapiens] 34 0.25
gi|54792138 helicase with zinc finger domain [Homo sapiens] 34 0.25
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 34 0.25
gi|15029506 homeobox D8 [Homo sapiens] 33 0.32
gi|83367077 mucin 16 [Homo sapiens] 33 0.32
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 33 0.32
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 33 0.32
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 33 0.32
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 33 0.32
gi|5032005 protein tyrosine phosphatase, receptor type, C-associ... 33 0.32
gi|34878701 paired box protein 2 isoform b [Homo sapiens] 33 0.42
gi|34878699 paired box protein 2 isoform a [Homo sapiens] 33 0.42
>gi|239757890 PREDICTED: similar to family with sequence similarity
70, member A [Homo sapiens]
Length = 377
Score = 770 bits (1987), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG 60
MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG
Sbjct: 1 MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG 60
Query: 61 GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL 120
GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL
Sbjct: 61 GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL 120
Query: 121 KPLYANRCHYVPKTSQKEAEEVNCPHLSREFCTPRIRGNTCFCCDLYNCGNRVEITGGYY 180
KPLYANRCHYVPKTSQKEAEEVNCPHLSREFCTPRIRGNTCFCCDLYNCGNRVEITGGYY
Sbjct: 121 KPLYANRCHYVPKTSQKEAEEVNCPHLSREFCTPRIRGNTCFCCDLYNCGNRVEITGGYY 180
Query: 181 EYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNPTLPALNCSVENTH 240
EYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNPTLPALNCSVENTH
Sbjct: 181 EYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNPTLPALNCSVENTH 240
Query: 241 PTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYM 300
PTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYM
Sbjct: 241 PTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYM 300
Query: 301 WSSSAPPRYSPPYYPPFEKPXXXXXXXGASPARSLFGLALPYAPPLYSAEVWLPSFSLYV 360
WSSSAPPRYSPPYYPPFEKP GASPARSLFGLALPYAPPLYSAEVWLPSFSLYV
Sbjct: 301 WSSSAPPRYSPPYYPPFEKPXXXXXXXGASPARSLFGLALPYAPPLYSAEVWLPSFSLYV 360
Query: 361 KECCPRALGRLPPQHLG 377
KECCPRALGRLPPQHLG
Sbjct: 361 KECCPRALGRLPPQHLG 377
>gi|157388933 hypothetical protein LOC55026 isoform 2 [Homo sapiens]
Length = 325
Score = 667 bits (1721), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG 60
MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG
Sbjct: 1 MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG 60
Query: 61 GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL 120
GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL
Sbjct: 61 GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL 120
Query: 121 KPLYANRCHYVPKTSQKEAEEVNCPHLSREFCTPRIRGNTCFCCDLYNCGNRVEITGGYY 180
KPLYANRCHYVPKTSQKEAEEVNCPHLSREFCTPRIRGNTCFCCDLYNCGNRVEITGGYY
Sbjct: 121 KPLYANRCHYVPKTSQKEAEEVNCPHLSREFCTPRIRGNTCFCCDLYNCGNRVEITGGYY 180
Query: 181 EYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNPTLPALNCSVENTH 240
EYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNPTLPALNCSVENTH
Sbjct: 181 EYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNPTLPALNCSVENTH 240
Query: 241 PTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYM 300
PTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYM
Sbjct: 241 PTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYM 300
Query: 301 WSSSAPPRYSPPYYPPFEKP 320
WSSSAPPRYSPPYYPPFEKP
Sbjct: 301 WSSSAPPRYSPPYYPPFEKP 320
>gi|157388931 hypothetical protein LOC55026 isoform 1 [Homo sapiens]
Length = 349
Score = 654 bits (1686), Expect = 0.0
Identities = 320/344 (93%), Positives = 320/344 (93%), Gaps = 24/344 (6%)
Query: 1 MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG 60
MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG
Sbjct: 1 MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG 60
Query: 61 GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL 120
GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL
Sbjct: 61 GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL 120
Query: 121 KPLYANRCHYVPKTSQKEAEEV------------------------NCPHLSREFCTPRI 156
KPLYANRCHYVPKTSQKEAEEV NCPHLSREFCTPRI
Sbjct: 121 KPLYANRCHYVPKTSQKEAEEVISSSTKNSPSTRVMRNLTQAAREVNCPHLSREFCTPRI 180
Query: 157 RGNTCFCCDLYNCGNRVEITGGYYEYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITA 216
RGNTCFCCDLYNCGNRVEITGGYYEYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITA
Sbjct: 181 RGNTCFCCDLYNCGNRVEITGGYYEYIDVSSCQDIIHLYHLLWSATILNIVGLFLGIITA 240
Query: 217 AVLGGFKDMNPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSG 276
AVLGGFKDMNPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSG
Sbjct: 241 AVLGGFKDMNPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSG 300
Query: 277 VFPSSPPSGLSDEPQSASPSPSYMWSSSAPPRYSPPYYPPFEKP 320
VFPSSPPSGLSDEPQSASPSPSYMWSSSAPPRYSPPYYPPFEKP
Sbjct: 301 VFPSSPPSGLSDEPQSASPSPSYMWSSSAPPRYSPPYYPPFEKP 344
>gi|32699048 family with sequence similarity 70, member B [Homo
sapiens]
Length = 326
Score = 307 bits (787), Expect = 9e-84
Identities = 168/318 (52%), Positives = 212/318 (66%), Gaps = 15/318 (4%)
Query: 13 MSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVILGFGS 72
+ L D +RRK+ S++ +LL+VSVLI+TVGLAATTRT+NVTVGGYYPG+ILGFGS
Sbjct: 9 LGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYPGIILGFGS 68
Query: 73 FLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDLKPLYANRCHY-- 130
FLGIIG NL+EN+RQMLVA+IVFISFGV+AAFCCAIVDGVFAA+HI+ +PL RC +
Sbjct: 69 FLGIIGINLVENRRQMLVAAIVFISFGVVAAFCCAIVDGVFAAQHIEPRPLTTGRCQFYS 128
Query: 131 --VPKTSQKEAEEVNCPHLSREFCTPRIRGNTCFCCDLYNCGNRVEITGGYYEYIDVSSC 188
V EV C L + C ++R NTC+CCDLY CG+ E + YYE+I VS C
Sbjct: 129 SGVGYLYDVYQTEVTCHSLDGK-CQLKVRSNTCYCCDLYACGS-AEPSPAYYEFIGVSGC 186
Query: 189 QDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNP-TLPALNCSVENTHPTVSYYA 247
QD++HLY LLW++ +LN++GLFLGIITAAVLG FKDM P + A +V P Y
Sbjct: 187 QDVLHLYRLLWASAVLNVLGLFLGIITAAVLGAFKDMVPLSQLAYGPAVP---PQTLYNP 243
Query: 248 HPQVASYNTYYHSPPHLPPYSAY--DFQHSGVFPSSPPSGLSDEPQSASPSPSYMWS--- 302
Q+ +Y + +P +P S+Y Q FP +P S L+ PSPS S
Sbjct: 244 AQQILAYAGFRLTPEPVPTCSSYPLPLQPCSRFPVAPSSALASSEDLQPPSPSSSGSGLP 303
Query: 303 SSAPPRYSPPYYPPFEKP 320
APP Y+P Y+PP EKP
Sbjct: 304 GQAPPCYAPTYFPPGEKP 321
>gi|157388935 hypothetical protein LOC55026 isoform 3 [Homo sapiens]
Length = 241
Score = 278 bits (710), Expect = 8e-75
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG 60
MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG
Sbjct: 1 MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVG 60
Query: 61 GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL 120
GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL
Sbjct: 61 GYYPGVILGFGSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDL 120
Query: 121 KPLYANRCHYVPKTSQKEAEE 141
KPLYANRCHYVPKTSQKEAEE
Sbjct: 121 KPLYANRCHYVPKTSQKEAEE 141
Score = 213 bits (543), Expect = 2e-55
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSG 285
NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSG
Sbjct: 142 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSG 201
Query: 286 LSDEPQSASPSPSYMWSSSAPPRYSPPYYPPFEKP 320
LSDEPQSASPSPSYMWSSSAPPRYSPPYYPPFEKP
Sbjct: 202 LSDEPQSASPSPSYMWSSSAPPRYSPPYYPPFEKP 236
>gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo
sapiens]
Length = 135
Score = 71.6 bits (174), Expect = 1e-12
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 13 MSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVIL 68
+ L D +RRK+ S++ +LL+VSVLI+TVGLAATTRT+NVTVGGYYPG+I+
Sbjct: 9 LGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYPGIIV 64
>gi|59806357 submaxillary gland androgen regulated protein 3 homolog
A precursor [Homo sapiens]
Length = 134
Score = 44.7 bits (104), Expect = 1e-04
Identities = 33/99 (33%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 249 PQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASP--SPSYMWSSSAP 306
P + T + PPH PPY F P SPP G P S P P + S S P
Sbjct: 40 PPCFPFGTGFVPPPHPPPYGPGRFPP----PLSPPYGPGRIPPSPPPPYGPGRIQSHSLP 95
Query: 307 PRYSPPYYPPFEKPXXXXXXXGASPARSLFGLALPYAPP 345
P Y P Y P +P P S ALP P
Sbjct: 96 PPYGPGYPQPPSQPRPYPPGPPFFPVNSPTDPALPTPAP 134
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSG 285
+PT P+ + + N PT Y+ P SY+ P P YS +S PS P+
Sbjct: 1623 SPTSPSYSPTSPNYSPTSPSYS-PTSPSYS------PTSPSYSPTSPSYSPTSPSYSPTS 1675
Query: 286 LSDEPQSASPSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLALP-Y 342
S P S S SP+ S P YSP P Y P P SP + P Y
Sbjct: 1676 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSY 1734
Query: 343 APPLYSAEVWLPSFS 357
+P S P++S
Sbjct: 1735 SPTSPSYSPTSPNYS 1749
Score = 40.4 bits (93), Expect = 0.003
Identities = 41/141 (29%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 220 GGFKDMNPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFP 279
GG+ +P+ + S T P+ S P +Y+ P P YS +S P
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYS----PTSPNYS------PTSPSYSPTSPSYSPTSP 1655
Query: 280 SSPPSGLSDEPQSASPSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFG 337
S P+ S P S S SP+ S P YSP P Y P P SP +
Sbjct: 1656 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYS 1714
Query: 338 LALP-YAPPLYSAEVWLPSFS 357
P Y+P S PS+S
Sbjct: 1715 PTSPSYSPTSPSYSPTSPSYS 1735
Score = 40.4 bits (93), Expect = 0.003
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHS-PPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + + PT Y+ P SY+ S P P YS +S PS P+
Sbjct: 1665 SPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1723
Query: 285 GLSDEPQSASPSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLALP- 341
S P S S SP+ S P YSP P Y P P SP + P
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP-TSPSYSPTSPSYSPTSPNYTPTSPN 1782
Query: 342 YAPPLYSAEVWLPSFS 357
Y+P S PS+S
Sbjct: 1783 YSPTSPSYSPTSPSYS 1798
Score = 37.7 bits (86), Expect = 0.017
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYN-TYYHSPPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + + PT Y+ P +Y+ T + P P YS +S P+ P+
Sbjct: 1721 SPTSPSYSPTSPSYSPTSPSYS-PTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPT 1779
Query: 285 GLSDEPQSASPSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLALP- 341
+ P S S SP+ S P YSP P Y P + P SP+ + P
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTP-QSPTYTPSSPSYSPSSPSYSPTSPK 1838
Query: 342 YAP--PLYS 348
Y P P YS
Sbjct: 1839 YTPTSPSYS 1847
Score = 37.7 bits (86), Expect = 0.017
Identities = 40/129 (31%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHS-PPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + N PT Y+ P SY+ S P P YS +++ P+ PS
Sbjct: 1763 SPTSPSYSPTSPNYTPTSPNYS-PTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPS 1821
Query: 285 GLSDEPQSASPSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLALP- 341
S P S S SP+ + P YSP P Y P P SP + P
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTP-TSPKYSPTSPKYSPTSPKYSPTSPT 1880
Query: 342 YAP--PLYS 348
Y+P P YS
Sbjct: 1881 YSPTTPKYS 1889
Score = 37.0 bits (84), Expect = 0.029
Identities = 43/139 (30%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHS-PPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + + PT Y+ P SY+ S P P YS +S PS P+
Sbjct: 1658 SPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1716
Query: 285 GLSDEPQSAS---PSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLA 339
S P S S SPSY S P YSP P Y P P SP +
Sbjct: 1717 SPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPNYSP-TSPNYTPTSPSYSPTSPSYSPT 1772
Query: 340 LP-YAPPLYSAEVWLPSFS 357
P Y P + PS+S
Sbjct: 1773 SPNYTPTSPNYSPTSPSYS 1791
Score = 37.0 bits (84), Expect = 0.029
Identities = 45/147 (30%), Positives = 58/147 (39%), Gaps = 20/147 (13%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSP--- 282
+PT P + N PT Y+ P SY+ SP + P Y Q PSSP
Sbjct: 1770 SPTSPNYTPTSPNYSPTSPSYS-PTSPSYSPT--SPSYSPSSPRYTPQSPTYTPSSPSYS 1826
Query: 283 ---PSGLSDEPQSASPSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFG 337
PS P+ SPSY S + P Y+P P Y P P SP +
Sbjct: 1827 PSSPSYSPTSPKYTPTSPSY---SPSSPEYTPTSPKYSP-TSPKYSPTSPKYSPTSPTYS 1882
Query: 338 LALP-YAP--PLYS--AEVWLPSFSLY 359
P Y+P P YS + V+ P+ Y
Sbjct: 1883 PTTPKYSPTSPTYSPTSPVYTPTSPKY 1909
Score = 35.4 bits (80), Expect = 0.085
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 260 SPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYMWSSSAPPRYSP--PYYPPF 317
SP + P AY+ + G + PS P + SPSY S P YSP P Y P
Sbjct: 1590 SPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSY---SPTSPNYSPTSPSYSP- 1645
Query: 318 EKPXXXXXXXGASPARSLFGLALP-YAPPLYSAEVWLPSFS 357
P SP + P Y+P S PS+S
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1686
Score = 35.4 bits (80), Expect = 0.085
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 6/144 (4%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYN-TYYHSPPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + + PT Y+ P SY+ T + P P Y+ +S PS P+
Sbjct: 1714 SPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPT 1772
Query: 285 GLSDEPQSASPSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLALP- 341
+ P S + SP+ S P YSP P Y P P +P+ + + P
Sbjct: 1773 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSP-SSPRYTPQSPTYTPSSPSYSPSSPS 1831
Query: 342 YAPPLYSAEVWLPSFSLYVKECCP 365
Y+P PS+S E P
Sbjct: 1832 YSPTSPKYTPTSPSYSPSSPEYTP 1855
Score = 35.0 bits (79), Expect = 0.11
Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 12/139 (8%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHS-PPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + + PT Y+ P SY+ S P P YS +S PS P+
Sbjct: 1672 SPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1730
Query: 285 GLSDEPQSAS---PSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLA 339
S P S S SP+Y S P Y+P P Y P P +P +
Sbjct: 1731 SPSYSPTSPSYSPTSPNY---SPTSPNYTPTSPSYSP-TSPSYSPTSPNYTPTSPNYSPT 1786
Query: 340 LP-YAPPLYSAEVWLPSFS 357
P Y+P S PS+S
Sbjct: 1787 SPSYSPTSPSYSPTSPSYS 1805
Score = 34.3 bits (77), Expect = 0.19
Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHS-PPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + + PT Y+ P SY+ S P P YS +S P+ P+
Sbjct: 1700 SPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPT 1758
Query: 285 GLSDEPQSAS---PSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLA 339
S P S S SP+Y +S P YSP P Y P P SP+ +
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPTS---PNYSPTSPSYSP-TSPSYSPTSPSYSPSSPRYTPQ 1814
Query: 340 LP-YAPPLYSAEVWLPSFS 357
P Y P S PS+S
Sbjct: 1815 SPTYTPSSPSYSPSSPSYS 1833
Score = 34.3 bits (77), Expect = 0.19
Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 227 PTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGL 286
PT P+ + S PT Y+ T P P YS ++S P+ P+
Sbjct: 1841 PTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP 1900
Query: 287 SDEPQSASPSPSYMWSSSAPPRYSP--PYYPPF--EKPXXXXXXXGASPARSLFGLALPY 342
P S SP+ S P+YSP P Y P + G SP + L P
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Query: 343 APP 345
P
Sbjct: 1961 ISP 1963
Score = 33.9 bits (76), Expect = 0.25
Identities = 43/145 (29%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHS-PPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + + PT Y+ P SY+ S P P YS +S PS P+
Sbjct: 1686 SPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1744
Query: 285 GLSDEPQSAS---PSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLA 339
+ P S + SPSY S P YSP P Y P P SP +
Sbjct: 1745 SPNYSPTSPNYTPTSPSY---SPTSPSYSPTSPNYTP-TSPNYSPTSPSYSPTSPSYSPT 1800
Query: 340 LP-YAP--PLYSAE--VWLPSFSLY 359
P Y+P P Y+ + + PS Y
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSY 1825
Score = 33.5 bits (75), Expect = 0.32
Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSP--- 282
+PT P+ + + + PT Y+ P Y SP + P +Y P+SP
Sbjct: 1784 SPTSPSYSPTSPSYSPTSPSYS-PSSPRYTP--QSPTYTPSSPSYSPSSPSYSPTSPKYT 1840
Query: 283 ---PSGLSDEPQSASPSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFG 337
PS P+ SP Y S P+YSP P Y P P SP +
Sbjct: 1841 PTSPSYSPSSPEYTPTSPKY---SPTSPKYSPTSPKYSP-TSPTYSPTTPKYSPTSPTYS 1896
Query: 338 LALP-YAP--PLYS 348
P Y P P YS
Sbjct: 1897 PTSPVYTPTSPKYS 1910
Score = 33.1 bits (74), Expect = 0.42
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 12/139 (8%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHS-PPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + + PT Y+ P SY+ S P P YS +S P+ P+
Sbjct: 1693 SPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPT 1751
Query: 285 GLSDEPQSAS---PSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLA 339
+ P S S SPSY S P Y+P P Y P P SP + +
Sbjct: 1752 SPNYTPTSPSYSPTSPSY---SPTSPNYTPTSPNYSP-TSPSYSPTSPSYSPTSPSYSPS 1807
Query: 340 LP-YAPPLYSAEVWLPSFS 357
P Y P + PS+S
Sbjct: 1808 SPRYTPQSPTYTPSSPSYS 1826
Score = 32.3 bits (72), Expect = 0.72
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHS-PPHLPPYSAYDFQHSGVFPSSPPS 284
+PT P+ + + + P+ Y PQ +Y S P P YS +++ PS PS
Sbjct: 1791 SPTSPSYSPTSPSYSPSSPRYT-PQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPS 1849
Query: 285 GLSDEPQS---ASPSPSYMWSSSAPPRYSP--PYYPPFEKPXXXXXXXGASPARSLFGLA 339
P S + SP Y S P+YSP P Y P P SP ++
Sbjct: 1850 SPEYTPTSPKYSPTSPKY---SPTSPKYSPTSPTYSP-TTPKYSPTSPTYSPTSPVYTPT 1905
Query: 340 LP-YAP--PLYS 348
P Y+P P YS
Sbjct: 1906 SPKYSPTSPTYS 1917
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 39.7 bits (91), Expect = 0.004
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 238 NTHPTVSYYAHPQVASYNTYYHSPPHL-PPYSAYDFQHSGVFPSSPPSGLSDEPQSASPS 296
++H Y P + S Y P HL PP+S + +G P+ PP S S++
Sbjct: 523 SSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAG--PNGPPVSSSSNSSSSTSQ 580
Query: 297 PSYMWSSSAP---PRYSPPYYPP 316
SY S +P P+ +P +PP
Sbjct: 581 GSYPCSHPSPSQGPQGAPYPFPP 603
Score = 30.0 bits (66), Expect = 3.6
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 260 SPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSAS----------PSPSYMWSSSAPPRY 309
+PP PYS+ + SS S S P AS P P+ + S+ PP+Y
Sbjct: 368 APPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKY 427
Query: 310 SPPYYP 315
+ P P
Sbjct: 428 TQPSLP 433
Score = 29.3 bits (64), Expect = 6.1
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 230 PALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYS---AYDFQHSGVFPSS 281
P + SV N P Y P + S + PP PPY A H G FP S
Sbjct: 414 PPTSLSVSNQPPK---YTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPS 465
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 39.7 bits (91), Expect = 0.004
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 238 NTHPTVSYYAHPQVASYNTYYHSPPHL-PPYSAYDFQHSGVFPSSPPSGLSDEPQSASPS 296
++H Y P + S Y P HL PP+S + +G P+ PP S S++
Sbjct: 523 SSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAG--PNGPPVSSSSNSSSSTSQ 580
Query: 297 PSYMWSSSAP---PRYSPPYYPP 316
SY S +P P+ +P +PP
Sbjct: 581 GSYPCSHPSPSQGPQGAPYPFPP 603
Score = 30.0 bits (66), Expect = 3.6
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 260 SPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSAS----------PSPSYMWSSSAPPRY 309
+PP PYS+ + SS S S P AS P P+ + S+ PP+Y
Sbjct: 368 APPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKY 427
Query: 310 SPPYYP 315
+ P P
Sbjct: 428 TQPSLP 433
Score = 29.3 bits (64), Expect = 6.1
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 230 PALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYS---AYDFQHSGVFPSS 281
P + SV N P Y P + S + PP PPY A H G FP S
Sbjct: 414 PPTSLSVSNQPPK---YTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPS 465
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 38.9 bits (89), Expect = 0.008
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 249 PQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYMWSSSAPPR 308
P + Y P HLP H V+P +PP P ++ P P+ + P
Sbjct: 456 PSYGALPPAYGPPAHLP-------YHPHVYPPNPPPPPVPPPPASFPPPAIPPPTPGYPP 508
Query: 309 YSPPYYPPFEKPXXXXXXXGASPARSLFGLALP---YAPP 345
P Y P F P A P GL LP Y PP
Sbjct: 509 PPPTYNPNFPPPPPRLPPTHAVPPHPPPGLGLPPASYPPP 548
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 38.5 bits (88), Expect = 0.010
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 260 SPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSY---MWSSSAPPRYSPPYYPP 316
SPP PP S S PS P L+ P PSP M S+ PP +PP P
Sbjct: 678 SPPASPPVSP-----SATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPP--PL 730
Query: 317 FEKPXXXXXXXGASPARSLFGLALPYAPPLYSA 349
P ASP S P PPL +A
Sbjct: 731 AAPPLQVPPSPPASPPMSPSATPPPRVPPLLAA 763
Score = 30.4 bits (67), Expect = 2.7
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 261 PPHLPPYSAYD-FQHSGVFPSSPPSGLSDEPQSASPSPSYMWSSSAP--PRYSPPYYPPF 317
PP PP A Q P+SPP P +P+ + AP P SPP PF
Sbjct: 618 PPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPF 677
Query: 318 EKPXXXXXXXGASP 331
P A+P
Sbjct: 678 SPPASPPVSPSATP 691
Score = 29.6 bits (65), Expect = 4.6
Identities = 31/92 (33%), Positives = 35/92 (38%), Gaps = 27/92 (29%)
Query: 260 SPPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYMWSSSAPPRYSPPYY--PPF 317
SPP PP A P SPP ASP S S+ PP +PP PP
Sbjct: 666 SPPPSPPVQA---------PFSPP---------ASPPVS---PSATPPSQAPPSLAAPPL 704
Query: 318 EKPXXXXXXXGASPARSLFGLALPYAPPLYSA 349
+ P ASP S P APP +A
Sbjct: 705 QVPPSPP----ASPPMSPSATPPPQAPPPLAA 732
Score = 29.3 bits (64), Expect = 6.1
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 223 KDMNPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYS--AYDFQHSGVFPS 280
KD P L L+ S T A P N P LPP A + PS
Sbjct: 290 KDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPS 349
Query: 281 SPPSGLSDEPQSASPSPSYMWSSSAPPRYSPP---YYPPFEKP 320
+PPS + A+P S + PP +PP PP + P
Sbjct: 350 APPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVP 392
Score = 28.9 bits (63), Expect = 7.9
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 279 PSSPPSGLSDEPQSASPSPSYMWSSSAPPRYSPPY-YPPFEKPXXXXXXXGASPARSLFG 337
P +PP+ L+ P PSP ++ PP+ P PP + P ASP S
Sbjct: 592 PQAPPA-LASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPP----ASPPLSPLA 646
Query: 338 LALPYAPPLYSAEVWLPSFS 357
P AP + + FS
Sbjct: 647 TPSPQAPNALAVHLLQAPFS 666
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 38.1 bits (87), Expect = 0.013
Identities = 30/100 (30%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 252 ASYNTYYHSP-PHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYMWSSSAPPRYS 310
A+Y SP P PP + SSPP L +P P P S PP +
Sbjct: 998 AAYGAPLTSPEPSQPPCAVCIGHRDAPRASSPPRYLQHDPFPFFPEPRA--PESEPPHHE 1055
Query: 311 PPYYPPFEKPXXXXXXXGASPARSLFGLALPYAPPLYSAE 350
PPY PP +SP R P+ P AE
Sbjct: 1056 PPYIPPAVCIGHRDAPRASSPPRHTQFDPFPFLPDTSDAE 1095
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 36.2 bits (82), Expect = 0.050
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 261 PPHLPPYSAYDFQHSGVF------PSSPPSGLSDEPQSASPSPSYMWSSSAPPRYSPPYY 314
PP PP YD+ F PSS S S S+S S S SSS + PP
Sbjct: 68 PPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLP 127
Query: 315 PPFEKP 320
P F P
Sbjct: 128 PAFGAP 133
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 36.2 bits (82), Expect = 0.050
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 261 PPHLPPYSAYDFQHSGVF------PSSPPSGLSDEPQSASPSPSYMWSSSAPPRYSPPYY 314
PP PP YD+ F PSS S S S+S S S SSS + PP
Sbjct: 68 PPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLP 127
Query: 315 PPFEKP 320
P F P
Sbjct: 128 PAFGAP 133
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 35.0 bits (79), Expect = 0.11
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 266 PYSAYDFQHSGVFPSSPPSGLSDE-PQSASPSPSYMWSSSAPPRYSP 311
P+ YDF +S P+SPP + D P++ SP+ S S + PP + P
Sbjct: 1570 PFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSS--SVNWPPEFRP 1614
>gi|149944516 tet oncogene family member 3 [Homo sapiens]
Length = 1660
Score = 34.7 bits (78), Expect = 0.14
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 217 AVLGGFKDMNPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSG 276
AV+ + + P+ S+ + + SYYA P + S N +HS LP +S Y F S
Sbjct: 1100 AVVESYSVLGNCRPSDPYSMNSVYSYHSYYAQPSLTSVNG-FHSKYALPSFSYYGFPSSN 1158
Query: 277 -VFPS 280
VFPS
Sbjct: 1159 PVFPS 1163
>gi|51173727 Sma- and Mad-related protein 1 [Homo sapiens]
Length = 465
Score = 33.9 bits (76), Expect = 0.25
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 248 HPQVASYNTYYHSPPHLPPYSAY--DFQ--HSGVFPSSPPSGLSDEPQSASP-------- 295
H +A + + PH+P + + FQ +S FP SP S + P S+S
Sbjct: 150 HSLLAQFRNLGQNEPHMPLNATFPDSFQQPNSHPFPHSPNSSYPNSPGSSSSTYPHSPTS 209
Query: 296 ----SPSYMWSSSAPPRYSPPYYP 315
SP M + + PP Y PP P
Sbjct: 210 SDPGSPFQMPADTPPPAYLPPEDP 233
>gi|5174509 Sma- and Mad-related protein 1 [Homo sapiens]
Length = 465
Score = 33.9 bits (76), Expect = 0.25
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 248 HPQVASYNTYYHSPPHLPPYSAY--DFQ--HSGVFPSSPPSGLSDEPQSASP-------- 295
H +A + + PH+P + + FQ +S FP SP S + P S+S
Sbjct: 150 HSLLAQFRNLGQNEPHMPLNATFPDSFQQPNSHPFPHSPNSSYPNSPGSSSSTYPHSPTS 209
Query: 296 ----SPSYMWSSSAPPRYSPPYYP 315
SP M + + PP Y PP P
Sbjct: 210 SDPGSPFQMPADTPPPAYLPPEDP 233
>gi|54792138 helicase with zinc finger domain [Homo sapiens]
Length = 1942
Score = 33.9 bits (76), Expect = 0.25
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 248 HPQVASYNTYYHSPPHLP-PYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYMWSSSAP 306
H Q A N ++H P LP P QH+ + + L ++P P P+ + +
Sbjct: 1350 HAQYAIPNRHFHPLPQLPRPPFPIPQQHT--LLNQQQNNLPEQPNQIPPQPNQVVQQQSQ 1407
Query: 307 PRYSPPYYPPFEKPXXXXXXXGASPARSLFGLALPYAPPLYSAEVWLP 354
P PP P A P + F A+ + P AE +P
Sbjct: 1408 LNQQPQQPPPQLSPAYQ-----AGPNNAFFNSAVAHRPQSPPAEAVIP 1450
Score = 28.9 bits (63), Expect = 7.9
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 273 QHSGVFPSSPP------SGLSDEPQSAS---PSPSYMWSSSAPPRYSPP 312
QH G FP P S S PQS++ P+ SY + APP+ PP
Sbjct: 1861 QHLGQFPPLMPNKQIAESANSSSPQSSAGGKPAMSYASALRAPPKPRPP 1909
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 33.9 bits (76), Expect = 0.25
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 261 PPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYMWSSSAPPRYS------PPYY 314
PP LPPY++ + S P+ P G++ ++ P P S APP+ + P
Sbjct: 293 PPPLPPYASCSPRAS--LPAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGAQALPAPPA 350
Query: 315 PPFEKPXXXXXXXGASPARSLFGLALPYAPPLYSAEVWLPSFS 357
PP +P G P L P APP S L S S
Sbjct: 351 PPGSQPFLQKKRHG-RPGAGGGKLNPPPAPPARSPTTELSSKS 392
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 33.5 bits (75), Expect = 0.32
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 16/66 (24%)
Query: 262 PHLPPYSAYDFQHSGVFPSSPPSGLSD-----------EPQSASPSPSYMWSSSAPPRYS 310
PH PP + H+ PS PPSG P SP+ +Y + PP
Sbjct: 62 PHAPPQA-----HAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPP 116
Query: 311 PPYYPP 316
PP PP
Sbjct: 117 PPPPPP 122
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 33.5 bits (75), Expect = 0.32
Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 212 GIITAAVLGGFKDMNPTLPALNCSVENTHPTVSYYAHPQVASYN------TYYHSPPHLP 265
G++T+ V +D++ T P + S + T S+ HP V S Y HS P
Sbjct: 11317 GVLTSLVTSSGRDISATFPTVPESPHESEATASWVTHPAVTSTTVPRTTPNYSHSEPDTT 11376
Query: 266 PYSA--------YDFQHSGVFPSSPPSGLSDEPQSASPS----PSYMWSSSAP 306
P A DF V P P S S + + P+ SS P
Sbjct: 11377 PSIATSPGAEATSDFPTITVSPDVPDMVTSQVTSSGTDTSITIPTLTLSSGEP 11429
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 33.5 bits (75), Expect = 0.32
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 261 PPHLPPYSAYDFQHSGVFPSSPPSGLSDEPQSASPSPSYMWSSSAPPRYSPPYYP 315
P LPP + H+ + S + P+PS WS PP SPPY P
Sbjct: 290 PVALPPLPVPQWHHAHQLKALAASKQGSATKQQGPTPS--WSGLPPPGLSPPYRP 342
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 33.5 bits (75), Expect = 0.32
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 227 PTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGL 286
PT P H + + P S N PP L P S+ H PS+ P L
Sbjct: 378 PTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHP---PSAHPPPL 434
Query: 287 SDEPQS----ASPS--PSYMWSSSAPPRYSPPYYPP 316
PQS +SP+ P S + PP P +PP
Sbjct: 435 QLMPQSQPLPSSPAQPPGLTQSQNLPP--PPASHPP 468
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.5 bits (75), Expect = 0.32
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 227 PTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGL 286
PT P H + + P S N PP L P S+ H PS+ P L
Sbjct: 932 PTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHP---PSAHPPPL 988
Query: 287 SDEPQS----ASPS--PSYMWSSSAPPRYSPPYYPP 316
PQS +SP+ P S + PP P +PP
Sbjct: 989 QLMPQSQPLPSSPAQPPGLTQSQNLPP--PPASHPP 1022
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.5 bits (75), Expect = 0.32
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 227 PTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSGL 286
PT P H + + P S N PP L P S+ H PS+ P L
Sbjct: 932 PTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHP---PSAHPPPL 988
Query: 287 SDEPQS----ASPS--PSYMWSSSAPPRYSPPYYPP 316
PQS +SP+ P S + PP P +PP
Sbjct: 989 QLMPQSQPLPSSPAQPPGLTQSQNLPP--PPASHPP 1022
>gi|5032005 protein tyrosine phosphatase, receptor type,
C-associated protein [Homo sapiens]
Length = 206
Score = 33.5 bits (75), Expect = 0.32
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 13 MSLPDSMGAFNRRKRN--SIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVILG 69
++LP ++G+ + + S VTV LL++ +L+L GLA R + GGYY LG
Sbjct: 13 LALPGALGSGGSAEDSVGSSSVTVVLLLLLLLLLATGLALAWRRLSRDSGGYYHPARLG 71
>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
Length = 393
Score = 33.1 bits (74), Expect = 0.42
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSG 285
NP L + N S T+P V+ + + T PPH+PP + S + P S
Sbjct: 289 NPELGS-NVSGTQTYPVVT----GRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSE 343
Query: 286 LSDEPQSASPSPSY--MWSSSAPPRYSPPYY 314
S P S +Y W S P S PYY
Sbjct: 344 FSGNPYSHPQYTAYNEAWRFSNPALLSSPYY 374
>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
Length = 416
Score = 33.1 bits (74), Expect = 0.42
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 226 NPTLPALNCSVENTHPTVSYYAHPQVASYNTYYHSPPHLPPYSAYDFQHSGVFPSSPPSG 285
NP L + N S T+P V+ + + T PPH+PP + S + P S
Sbjct: 312 NPELGS-NVSGTQTYPVVT----GRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSE 366
Query: 286 LSDEPQSASPSPSY--MWSSSAPPRYSPPYY 314
S P S +Y W S P S PYY
Sbjct: 367 FSGNPYSHPQYTAYNEAWRFSNPALLSSPYY 397
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,186,337
Number of Sequences: 37866
Number of extensions: 825942
Number of successful extensions: 4183
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 3704
Number of HSP's gapped (non-prelim): 471
length of query: 377
length of database: 18,247,518
effective HSP length: 104
effective length of query: 273
effective length of database: 14,309,454
effective search space: 3906480942
effective search space used: 3906480942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.