Guide to the Human Genome
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Name: LOC100290771 Sequence: fasta or formatted (164aa) NCBI GI: 239747494
Description:

PREDICTED: hypothetical protein XP_002347536

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         11           2
 C cysteine            4.3          7           1
 D aspartate           3.0          5           1
 E glutamate          10.4         17           3
 F phenylalanine       2.4          4           1
 G glycine            12.2         20           2
 H histidine           6.7         11           2
 I isoleucine          1.8          3           1
 K lysine              3.7          6           2
 L leucine             9.1         15           2
 M methionine          1.2          2           1
 N asparagine          4.3          7           1
 P proline             6.1         10           2
 Q glutamine           6.7         11           2
 R arginine            2.4          4           2
 S serine              4.3          7           2
 T threonine           3.7          6           1
 V valine              7.9         13           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347536 
LOC100293645          1.000   PREDICTED: hypothetical protein 
LOC100287448          1.000   PREDICTED: hypothetical protein XP_002342205 
LOC100290023          0.131   PREDICTED: hypothetical protein XP_002348147 
LOC100292090          0.125   PREDICTED: hypothetical protein XP_002345529 
CCDC129               0.024   coiled-coil domain containing 129 
TCAP                  0.012   telethonin 
OBSCN                 0.009   obscurin, cytoskeletal calmodulin and titin-interact...
ITK                   0.009   IL2-inducible T-cell kinase 
RSPH1                 0.006   testis-specific gene A2 
SSPO                  0.006   SCO-spondin 
CYC1                  0.006   cytochrome c-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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