Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239757441

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757441 PREDICTED: hypothetical protein [Homo sapiens]
         (167 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757441 PREDICTED: hypothetical protein [Homo sapiens]           327   2e-90
gi|239751958 PREDICTED: hypothetical protein [Homo sapiens]           327   2e-90
gi|239746441 PREDICTED: hypothetical protein XP_002344223 [Homo ...   327   2e-90
gi|106879210 Src homology 2 domain containing adaptor protein B ...    31   0.56 
gi|169161002 PREDICTED: hypothetical protein [Homo sapiens]            30   0.74 
gi|169162097 PREDICTED: hypothetical protein [Homo sapiens]            30   0.74 
gi|169161240 PREDICTED: hypothetical protein [Homo sapiens]            30   0.74 
gi|30348954 mindbomb homolog 1 [Homo sapiens]                          30   0.74 
gi|239752797 PREDICTED: hypothetical protein [Homo sapiens]            29   1.6  
gi|239747322 PREDICTED: hypothetical protein XP_002346421 [Homo ...    29   1.6  
gi|239745962 PREDICTED: hypothetical protein XP_002343626 [Homo ...    29   1.6  
gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo ...    29   1.6  
gi|124430752 kinesin family member 26B [Homo sapiens]                  29   1.6  
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]            29   2.1  
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]             29   2.1  
gi|134288906 tripartite motif-containing 67 [Homo sapiens]             29   2.1  
gi|126090909 engrailed homeobox 1 [Homo sapiens]                       28   3.7  
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ...    28   3.7  
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ...    28   3.7  
gi|68989256 ras inhibitor RIN1 [Homo sapiens]                          28   3.7  
gi|11119430 testis-specific kinase substrate [Homo sapiens]            28   3.7  
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          28   3.7  
gi|30387654 late cornified envelope 1A [Homo sapiens]                  28   3.7  
gi|30387648 late cornified envelope 1D [Homo sapiens]                  28   4.8  
gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo...    28   4.8  
gi|126157477 hypothetical protein LOC79680 [Homo sapiens]              28   4.8  
gi|116235448 hypothetical protein LOC81610 [Homo sapiens]              28   4.8  
gi|30410035 late cornified envelope 5A [Homo sapiens]                  27   6.2  
gi|41054846 armadillo repeat containing, X-linked 5 [Homo sapiens]     27   6.2  
gi|14149746 nuclear receptor subfamily 2, group F, member 2 isof...    27   8.1  

>gi|239757441 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 167

 Score =  327 bits (839), Expect = 2e-90
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS 60
           MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS
Sbjct: 1   MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS 60

Query: 61  FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT 120
           FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT
Sbjct: 61  FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT 120

Query: 121 ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 167
           ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT
Sbjct: 121 ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 167


>gi|239751958 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score =  327 bits (839), Expect = 2e-90
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS 60
           MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS
Sbjct: 39  MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS 98

Query: 61  FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT 120
           FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT
Sbjct: 99  FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT 158

Query: 121 ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 167
           ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT
Sbjct: 159 ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 205


>gi|239746441 PREDICTED: hypothetical protein XP_002344223 [Homo
           sapiens]
          Length = 205

 Score =  327 bits (839), Expect = 2e-90
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 1   MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS 60
           MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS
Sbjct: 39  MGTVHVQVQVLLGGARVAAILADVELVPPLLIGILLLHPMDFLQVEGVVEALAAEGAQVS 98

Query: 61  FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT 120
           FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT
Sbjct: 99  FHLVVALEVTVQHALQTEALATQVTAVNHRVAARACVVLTLRGALPFPRPCSGAPRTTGT 158

Query: 121 ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 167
           ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT
Sbjct: 159 ASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 205


>gi|106879210 Src homology 2 domain containing adaptor protein B
           [Homo sapiens]
          Length = 509

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 139 AAGCCGGASGQGCPGAQGSPNSQPHL 164
           AAGCC  +SG G   +  S +  PHL
Sbjct: 136 AAGCCCASSGAGAAASSSSSSGSPHL 161


>gi|169161002 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 30.4 bits (67), Expect = 0.74
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 44  QVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALATQVTAVNHRVAARAC-VVLTLR 102
           QV  + E LAA GA++    ++A  +  Q     EA +T  T V  R+ AR C +V   R
Sbjct: 64  QVGALPETLAASGARMWPLALMAAPMAQQRGTLAEAASTVATCV--RLLARVCALVAHQR 121

Query: 103 GAL 105
           GAL
Sbjct: 122 GAL 124


>gi|169162097 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 30.4 bits (67), Expect = 0.74
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 44  QVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALATQVTAVNHRVAARAC-VVLTLR 102
           QV  + E LAA GA++    ++A  +  Q     EA +T  T V  R+ AR C +V   R
Sbjct: 64  QVGALPETLAASGARMWPLALMAAPMAQQRGTLAEAASTVATCV--RLLARVCALVAHQR 121

Query: 103 GAL 105
           GAL
Sbjct: 122 GAL 124


>gi|169161240 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 30.4 bits (67), Expect = 0.74
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 44  QVEGVVEALAAEGAQVSFHLVVALEVTVQHALQTEALATQVTAVNHRVAARAC-VVLTLR 102
           QV  + E LAA GA++    ++A  +  Q     EA +T  T V  R+ AR C +V   R
Sbjct: 64  QVGALPETLAASGARMWPLALMAAPMAQQRGTLAEAASTVATCV--RLLARVCALVAHQR 121

Query: 103 GAL 105
           GAL
Sbjct: 122 GAL 124


>gi|30348954 mindbomb homolog 1 [Homo sapiens]
          Length = 1006

 Score = 30.4 bits (67), Expect = 0.74
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 87  VNHRVAARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVV-RRVPAAGCCGG 145
           V  R     CVV + + A    +PC         A+ +      + VV RRVP   CCGG
Sbjct: 857 VQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRVPFIMCCGG 916

Query: 146 ASGQ 149
            S +
Sbjct: 917 KSSE 920


>gi|239752797 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 347

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 113 GAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPH 163
           G  R  G A     V L +EV   + AA    GA  +GCPGAQ   ++Q H
Sbjct: 164 GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGA--EGCPGAQRPFHAQDH 212


>gi|239747322 PREDICTED: hypothetical protein XP_002346421 [Homo
           sapiens]
          Length = 347

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 113 GAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPH 163
           G  R  G A     V L +EV   + AA    GA  +GCPGAQ   ++Q H
Sbjct: 164 GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGA--EGCPGAQRPFHAQDH 212


>gi|239745962 PREDICTED: hypothetical protein XP_002343626 [Homo
           sapiens]
          Length = 398

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 128 ALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 167
           ++  ++ RR    G  G    +GC GA G P   P L++T
Sbjct: 313 SMFTDMARRGAGPGVSGRTQTRGCAGAGGRPPGAPGLALT 352


>gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo
           sapiens]
          Length = 347

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 113 GAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPH 163
           G  R  G A     V L +EV   + AA    GA  +GCPGAQ   ++Q H
Sbjct: 164 GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGA--EGCPGAQRPFHAQDH 212


>gi|124430752 kinesin family member 26B [Homo sapiens]
          Length = 2108

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 93   ARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCP 152
            ++ C V T +G LP P P   + + +G AS     +LLQ  VR  P              
Sbjct: 1086 SQRCKVYTQKGVLPSPAPLPPSSKDSGVAS---RESLLQPEVRTPPVGMSPQVLKKSMSA 1142

Query: 153  GAQGSPNS 160
            G++G P +
Sbjct: 1143 GSEGFPET 1150


>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
          Length = 1516

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 115 PRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 167
           P+ TG    V  + L+     +VP   CCGGA G G    + +P   P L +T
Sbjct: 5   PKLTGETLIVHHIPLVH---CQVPDRQCCGGAGGGG-GSTRPNPFCPPELGIT 53


>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
          Length = 1516

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 115 PRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPHLSVT 167
           P+ TG    V  + L+     +VP   CCGGA G G    + +P   P L +T
Sbjct: 5   PKLTGETLIVHHIPLVH---CQVPDRQCCGGAGGGG-GSTRPNPFCPPELGIT 53


>gi|134288906 tripartite motif-containing 67 [Homo sapiens]
          Length = 783

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 93  ARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCP 152
           AR   V T  G    P+P     R +G  +  AA A L+      PA G  GG++  G  
Sbjct: 31  ARTIAVQTPDGEQHLPQPLL-LSRGSGLQAGAAAAASLEHDAAAGPACGGAGGSAAGGLG 89

Query: 153 GAQG 156
           G  G
Sbjct: 90  GGAG 93


>gi|126090909 engrailed homeobox 1 [Homo sapiens]
          Length = 392

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 14/46 (30%), Positives = 18/46 (39%)

Query: 112 SGAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGS 157
           +G P     A+  A  A       +    G  G   G G PGAQG+
Sbjct: 195 AGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240


>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
           sapiens]
          Length = 258

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 130 LQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQP 162
           LQ ++   P  GC  G +G+G     GSP++ P
Sbjct: 146 LQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAP 178


>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
           sapiens]
          Length = 258

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 130 LQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQP 162
           LQ ++   P  GC  G +G+G     GSP++ P
Sbjct: 146 LQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAP 178


>gi|68989256 ras inhibitor RIN1 [Homo sapiens]
          Length = 783

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 143 CGGASG---QGCPGAQGSPNSQPHL 164
           CG  S    +G PG++GSP + PHL
Sbjct: 316 CGSPSSSEEEGVPGSRGSPATSPHL 340


>gi|11119430 testis-specific kinase substrate [Homo sapiens]
          Length = 592

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)

Query: 146 ASGQGCPGAQGSPN--SQPH 163
           A+ QGCPG  GSP+  S+PH
Sbjct: 277 ATSQGCPGPPGSPDKPSRPH 296


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 126  AVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPH 163
            +V  LQE+V  VP  G  GG+ G G  G  G      H
Sbjct: 3493 SVVNLQEMVLHVPTGGGGGGSGGGGGGGGGGGGGGSYH 3530


>gi|30387654 late cornified envelope 1A [Homo sapiens]
          Length = 110

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 137 VPAAGCCGGASGQGCPGAQG 156
           V + GCCG +SG GC    G
Sbjct: 46  VSSGGCCGSSSGGGCSSGGG 65


>gi|30387648 late cornified envelope 1D [Homo sapiens]
          Length = 114

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 137 VPAAGCCGGASGQGCPGAQG 156
           V + GCCG +SG GC    G
Sbjct: 42  VSSGGCCGSSSGGGCGSNSG 61


>gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo
           sapiens]
          Length = 938

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 107 FPRPCSGAPRTTGTASCVAA--------VALLQEVVRRVPAAGCCG 144
           FPRP    P   GT +CV A        V  L  V++   AAG  G
Sbjct: 369 FPRPIQSWPGAAGTTACVCADTVYYYQMVPRLTAVLQTAMAAGSLG 414


>gi|126157477 hypothetical protein LOC79680 [Homo sapiens]
          Length = 364

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 123 CVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQPH 163
           C   V +   + ++  A+G CGG   +  P A   P+S+PH
Sbjct: 52  CGDTVCVRTTMEQKSTASGTCGGKPAERGPLAGHMPSSRPH 92


>gi|116235448 hypothetical protein LOC81610 [Homo sapiens]
          Length = 615

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 93  ARACVVLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAA 140
           ARAC++  L    P  R C+      G +S  AA+ALL E +  VPAA
Sbjct: 2   ARACLIQRL----PIKRDCTPV-FVRGLSSPSAAMALLSEGLDEVPAA 44


>gi|30410035 late cornified envelope 5A [Homo sapiens]
          Length = 118

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 106 PFPRPCS--------GAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGA 154
           P P P S        G   + G   C++     Q + RR  ++ CCG  SGQ   G+
Sbjct: 43  PCPPPVSSCCGSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGS 99


>gi|41054846 armadillo repeat containing, X-linked 5 [Homo sapiens]
          Length = 558

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 43  LQVEGVVEALAAEGAQVSFHLVV---ALEVT--VQHALQTEALATQVTAVNHRVAARACV 97
           L+ E V +A A +GA    H V    A+ VT  V     T      V      +A R+ V
Sbjct: 44  LKTESVTQAKAGDGAMTRTHTVTYREAMAVTREVIKVEDTTKTRVMVETKTKPLAERSIV 103

Query: 98  VLTLRGALPFPRPCSGAPRTTGTASCVAAVALLQEVVR 135
             T   A+P  R       +T T S V  VA+++  +R
Sbjct: 104 PQTKSKAMPMSRV------STVTKSEVKVVAVIEANIR 135


>gi|14149746 nuclear receptor subfamily 2, group F, member 2 isoform
           a [Homo sapiens]
          Length = 414

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 8/58 (13%)

Query: 104 ALPFPRPCSGAPRTTGTASCVAAVALLQEVVRRVPAAGCCGGASGQGCPGAQGSPNSQ 161
           A P P P  GAP T  T          Q      PA    GG  G G PG+      Q
Sbjct: 26  APPVPGPPPGAPHTPQTPG--------QGGPASTPAQTAAGGQGGPGGPGSDKQQQQQ 75


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,318,109
Number of Sequences: 37866
Number of extensions: 267504
Number of successful extensions: 1519
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1491
Number of HSP's gapped (non-prelim): 52
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press