Guide to the Human Genome
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Name: LOC100130262 Sequence: fasta or formatted (165aa) NCBI GI: 169161002
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {165aa} PREDICTED: hypothetical protein
alt mRNA {165aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            26.1         43           4
 C cysteine            1.2          2           1
 D aspartate           0.6          1           1
 E glutamate           5.5          9           1
 F phenylalanine       1.2          2           1
 G glycine             6.7         11           1
 H histidine           3.6          6           2
 I isoleucine          0.6          1           1
 K lysine              0.6          1           1
 L leucine            15.2         25           2
 M methionine          3.0          5           1
 N asparagine          0.0          0           0
 P proline             4.2          7           1
 Q glutamine           4.8          8           2
 R arginine           10.3         17           2
 S serine              1.8          3           1
 T threonine           3.0          5           1
 V valine             10.9         18           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130262          1.000   PREDICTED: hypothetical protein 
LOC100130262          1.000   PREDICTED: hypothetical protein 
LOC100130667          0.267   PREDICTED: hypothetical protein 
LOC100130667          0.267   PREDICTED: hypothetical protein 
LOC100130667          0.267   PREDICTED: hypothetical protein 
LOC100289978          0.098   PREDICTED: hypothetical protein XP_002348035 
LOC100293166          0.067   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.067   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.067   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.067   PREDICTED: similar to ribosomal protein L36a 
LOC100290090          0.049   PREDICTED: hypothetical protein XP_002348037 
LOC100288446          0.049   PREDICTED: hypothetical protein XP_002343740 
LOC100290893          0.028   PREDICTED: hypothetical protein XP_002347938 
LOC100288361          0.028   PREDICTED: hypothetical protein XP_002344205 
LOC100292107          0.025   PREDICTED: hypothetical protein XP_002345458 
LOC100288393          0.025   PREDICTED: hypothetical protein 
LOC100288393          0.025   PREDICTED: hypothetical protein XP_002343765 
RABEP2                0.025   rabaptin, RAB GTPase binding effector protein 2 [Ho...
LOC100292356          0.018   PREDICTED: hypothetical protein 
LOC100287054          0.018   PREDICTED: hypothetical protein 
LOC100287054          0.018   PREDICTED: hypothetical protein XP_002344223 
SH2D3C                0.018   SH2 domain containing 3C isoform e 
SH2D3C                0.018   SH2 domain containing 3C isoform d 
SH2D3C                0.018   SH2 domain containing 3C isoform c 
SH2D3C                0.018   SH2 domain containing 3C isoform c 
SH2D3C                0.018   SH2 domain containing 3C isoform b 
SH2D3C                0.018   SH2 domain containing 3C isoform a 
LOC100292168          0.018   PREDICTED: similar to hCG2030094 
LOC100288743          0.018   PREDICTED: similar to hCG2030094 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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