Guide to the Human Genome
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Name: LOC100292356 Sequence: fasta or formatted (167aa) NCBI GI: 239757441
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         26           2
 C cysteine            3.6          6           2
 D aspartate           1.2          2           1
 E glutamate           4.2          7           1
 F phenylalanine       1.8          3           1
 G glycine             9.6         16           2
 H histidine           3.6          6           1
 I isoleucine          1.8          3           1
 K lysine              0.0          0           0
 L leucine            12.6         21           3
 M methionine          1.2          2           1
 N asparagine          1.2          2           1
 P proline             6.6         11           2
 Q glutamine           6.6         11           1
 R arginine            4.8          8           2
 S serine              4.2          7           1
 T threonine           6.0         10           2
 V valine             15.6         26           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287054          1.000   PREDICTED: hypothetical protein 
LOC100287054          1.000   PREDICTED: hypothetical protein XP_002344223 
SHB                   0.020   Src homology 2 domain containing adaptor protein B ...
LOC100130262          0.017   PREDICTED: hypothetical protein 
LOC100130262          0.017   PREDICTED: hypothetical protein 
LOC100130262          0.017   PREDICTED: hypothetical protein 
MIB1                  0.017   mindbomb homolog 1 
LOC100292754          0.013   PREDICTED: hypothetical protein 
LOC100290764          0.013   PREDICTED: hypothetical protein XP_002346421 
LOC100286968          0.013   PREDICTED: hypothetical protein XP_002343626 
LOC100287607          0.013   PREDICTED: hypothetical protein XP_002342119 
KIF26B                0.013   kinesin family member 26B 
RUSC2                 0.013   RUN and SH3 domain containing 2 
RUSC2                 0.013   RUN and SH3 domain containing 2 
TRIM67                0.013   tripartite motif-containing 67 
EN1                   0.010   engrailed homeobox 1 
LOC100291061          0.010   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.010   PREDICTED: hypothetical protein XP_002343855 
RIN1                  0.010   ras inhibitor RIN1 
TSKS                  0.010   testis-specific kinase substrate 
ZFHX3                 0.010   AT-binding transcription factor 1 
LCE1A                 0.010   late cornified envelope 1A 
LCE1D                 0.010   late cornified envelope 1D 
C14orf135             0.010   hepatitis C virus F protein-binding protein 2 [Homo...
C22orf29              0.010   hypothetical protein LOC79680 
FAM83D                0.010   hypothetical protein LOC81610 
LCE5A                 0.007   late cornified envelope 5A 
ARMCX5                0.007   armadillo repeat containing, X-linked 5 
NR2F2                 0.007   nuclear receptor subfamily 2, group F, member 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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