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Search of human proteins with 239757333
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]
(303 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757333 PREDICTED: hypothetical protein [Homo sapiens] 626 e-180
gi|239751837 PREDICTED: hypothetical protein [Homo sapiens] 620 e-178
gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo ... 620 e-178
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.063
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 35 0.11
gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo ... 35 0.11
gi|4507161 SRY-box 11 [Homo sapiens] 34 0.14
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 34 0.14
gi|18466802 Ras and Rab interactor 2 [Homo sapiens] 34 0.18
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 33 0.24
gi|54873613 agrin [Homo sapiens] 33 0.31
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 33 0.41
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 33 0.41
gi|148727370 immediate early response 5-like [Homo sapiens] 33 0.41
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.53
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.53
gi|83367077 mucin 16 [Homo sapiens] 32 0.91
gi|239757949 PREDICTED: similar to CTL-recognized antigen on mel... 32 0.91
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91
gi|55770876 notch4 preproprotein [Homo sapiens] 32 0.91
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 31 1.2
gi|110681708 zinc finger protein 579 [Homo sapiens] 31 1.2
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 31 1.5
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 31 1.5
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 31 1.5
gi|113423529 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 31 1.5
>gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 626 bits (1614), Expect = e-180
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60
MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD
Sbjct: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60
Query: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV
Sbjct: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
Query: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTWTSTFWVHPQLLGQFQEGRQLL 180
KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTWTSTFWVHPQLLGQFQEGRQLL
Sbjct: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTWTSTFWVHPQLLGQFQEGRQLL 180
Query: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240
AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW
Sbjct: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240
Query: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300
PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA
Sbjct: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300
Query: 301 TLF 303
TLF
Sbjct: 301 TLF 303
>gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 620 bits (1600), Expect = e-178
Identities = 302/303 (99%), Positives = 302/303 (99%)
Query: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60
MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD
Sbjct: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60
Query: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV
Sbjct: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
Query: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTWTSTFWVHPQLLGQFQEGRQLL 180
KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTT TSTFWVHPQLLGQFQEGRQLL
Sbjct: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180
Query: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240
AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW
Sbjct: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240
Query: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300
PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA
Sbjct: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300
Query: 301 TLF 303
TLF
Sbjct: 301 TLF 303
>gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo
sapiens]
Length = 303
Score = 620 bits (1600), Expect = e-178
Identities = 302/303 (99%), Positives = 302/303 (99%)
Query: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60
MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD
Sbjct: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60
Query: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV
Sbjct: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
Query: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTWTSTFWVHPQLLGQFQEGRQLL 180
KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTT TSTFWVHPQLLGQFQEGRQLL
Sbjct: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180
Query: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240
AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW
Sbjct: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240
Query: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300
PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA
Sbjct: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300
Query: 301 TLF 303
TLF
Sbjct: 301 TLF 303
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 35.4 bits (80), Expect = 0.063
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87
PG AG T A+GP+G G G+ G R P GF G AG +GQ
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSP--------GERGEVGPAGPNGFAGPAGAAGQP 735
Query: 88 AAYSVRNSR 96
A R ++
Sbjct: 736 GAKGERGAK 744
Score = 28.5 bits (62), Expect = 7.7
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 26 AGP-GVAGETRQAARRWASGPSGGGGDAGAT----------ERRRDTRCGLRPRCRPPMT 74
AGP G AG+ R A GP G G G T G R PP
Sbjct: 726 AGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGM 785
Query: 75 EGFWGGAGGSG 85
GF G AG +G
Sbjct: 786 TGFPGAAGRTG 796
>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 468
Score = 34.7 bits (78), Expect = 0.11
Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 36/205 (17%)
Query: 113 CRRASLHVKLGDPEMTL-SPSSSTNFSRTVPLTCRRQRLWKLQPRTTWTSTFWVHPQL-L 170
C S+ + G P M L +PS T+ + RR+ +W R + F +P L +
Sbjct: 81 CPCPSVKFQPGLPAMALPTPSDGTHTAEAQGSGRRRRIVWTPSQREALRACFERNPYLGI 140
Query: 171 GQFQEGRQLLAVQE-------QVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMG-RGA 222
++ Q + + E Q +R R H+ + + W HG G G R A
Sbjct: 141 TTREQLAQAIGILEPRVPIWFQNERSSQLRQ--HRRKSRPWPGR----HGPPEGRGKRTA 194
Query: 223 VWNASAPLLNRASSASRWPSEYRKPGLAPGTLGPES-------------------TPSSA 263
V + L RA R+P K LA T+ PES P+ A
Sbjct: 195 VTGSQTALFLRAFEKDRFPGIAAKEELARETVLPESRIQIWFQNRRARHPGQAGRAPTKA 254
Query: 264 AS-WEAAIGVTRADPTWPSEASGGA 287
S AA G DP+W + A GA
Sbjct: 255 GSLCNAATGECHPDPSWVAFAHIGA 279
>gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo
sapiens]
Length = 236
Score = 34.7 bits (78), Expect = 0.11
Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 36/205 (17%)
Query: 113 CRRASLHVKLGDPEMTL-SPSSSTNFSRTVPLTCRRQRLWKLQPRTTWTSTFWVHPQL-L 170
C S+ + G P M L +PS T+ + RR+ +W R + F +P L +
Sbjct: 25 CPCPSVKFQPGLPAMALPTPSDGTHTAEAQGWGRRRRIVWTPSQREALRACFERNPYLGI 84
Query: 171 GQFQEGRQLLAVQE-------QVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMG-RGA 222
++ Q + + E Q +R R H+ + + W HG G G R A
Sbjct: 85 TTREQLAQAIGILEPRVPIWFQNERSSQLRQ--HRRKSRPWPGR----HGPPEGRGKRTA 138
Query: 223 VWNASAPLLNRASSASRWPSEYRKPGLAPGTLGPES-------------------TPSSA 263
V + L RA R+P K LA T+ PES P+ A
Sbjct: 139 VTGSQTALFLRAFEKDRFPGIAAKEELARETVLPESRIQIWFQNRRARHPGQAGRAPTKA 198
Query: 264 AS-WEAAIGVTRADPTWPSEASGGA 287
S AA G DP+W + A GA
Sbjct: 199 GSLCNAATGECHPDPSWVAFAHIGA 223
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 34.3 bits (77), Expect = 0.14
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 21 RMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGG 80
+M SA P + ++A G +GGG T + +CG + + P G G
Sbjct: 125 KMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCG---KLKAPAAAGAKAG 181
Query: 81 AGGSGQEAAY 90
AG + Q Y
Sbjct: 182 AGKAAQSGDY 191
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 34.3 bits (77), Expect = 0.14
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 59 RDTRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASL 118
R+ R RP PP G GSG ++YS +SR ++ ++S VS V+ +S
Sbjct: 666 REARRKERPARTPPRRRTLSGSGSGSG--SSYSGSSSRSRSLSVSSVSSVSSATSSSSSA 723
Query: 119 H-VKLGDPEMTL-SPSSSTNFSRTVPLTCRRQR 149
H V D L SP SS + P R+++
Sbjct: 724 HSVDSEDMYADLASPVSSASSRSPAPAQTRKEK 756
>gi|18466802 Ras and Rab interactor 2 [Homo sapiens]
Length = 895
Score = 33.9 bits (76), Expect = 0.18
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
T G RP P + G G GG+ EAA + P S +RP C
Sbjct: 376 TLSGGRPGAGPELELGTAGSPGGAPPEAAPG------DCTRAPPPSSESRPPCHGG--RQ 427
Query: 121 KLGDPEMTLSPSSSTNFSRTVPL 143
+L D ++ S S S F R++PL
Sbjct: 428 RLSDMSISTSSSDSLEFDRSMPL 450
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.5 bits (75), Expect = 0.24
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 9 GPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPR 68
GP+G + S AGP AG A R A GP G GD G T R G++
Sbjct: 1053 GPVGPAGKSGDRGESGPAGP--AGAPGPAGSRGAPGPQGPRGDKGETGER--GAAGIKGH 1108
Query: 69 CRPPMTEGFWGGAGGSGQEAA 89
P G G G +GQ+ A
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGA 1129
Score = 32.3 bits (72), Expect = 0.53
Identities = 25/65 (38%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 29 GVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGGS 84
G GE A G GG GDAGA R GLR PP EG G AG
Sbjct: 654 GKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP 713
Query: 85 GQEAA 89
G A
Sbjct: 714 GPPGA 718
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAG-ATERRRDTRCGLRPRCRPPMTEGFWGGAGGSG 85
PG AGE R +GP+G G+ G A ER G R P +G GG G G
Sbjct: 479 PGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRG 537
Score = 29.6 bits (65), Expect = 3.4
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 7 AGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLR 66
A GPLG+ ++ G+AG R + GP G G++G + GL
Sbjct: 943 APGPLGIAG--------ITGARGLAGPPGMPGPRGSPGPQGVKGESG-----KPGANGLS 989
Query: 67 PRCRPPMTEGFWGGAGGSGQ 86
PP +G G AG +G+
Sbjct: 990 GERGPPGPQGLPGLAGTAGE 1009
Score = 29.3 bits (64), Expect = 4.5
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDT-------RCGLRPRCRPPMTEGFWGG 80
PG+AG R +GP G G GA + + G + PP G GG
Sbjct: 788 PGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGG 847
Query: 81 AGGSGQEAAYSVRNSR 96
+G +G V+ R
Sbjct: 848 SGPAGPPGPQGVKGER 863
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 33.1 bits (74), Expect = 0.31
Identities = 47/189 (24%), Positives = 60/189 (31%), Gaps = 34/189 (17%)
Query: 13 VRARCTLLRMSLSAGPGVAG-ETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC-- 69
VR C + S PGVAG + Q A GP+G DA A + RC RC
Sbjct: 855 VRDDCEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADASAPATCAEMRCEFGARCVE 914
Query: 70 --------RPPMTEGFWGGAGGSGQEAAYSVRNSRLKA-----------STISPVSRVTR 110
P +T G + +LK ++ P
Sbjct: 915 ESGSAHCVCPMLTCPEANATKVCGSDGVTYGNECQLKTIACRQGLQISIQSLGPCQEAVA 974
Query: 111 PRCRRASLHVKLGDPEMTLSPS------------SSTNFSRTVPLTCRRQRLWKLQPRTT 158
P S V + P + LS + SST S+T P R R PRTT
Sbjct: 975 PSTHPTSASVTVTTPGLLLSQALPAPPGALPLAPSSTAHSQTTPPPSSRPRTTASVPRTT 1034
Query: 159 WTSTFWVHP 167
V P
Sbjct: 1035 VWPVLTVPP 1043
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 32.7 bits (73), Expect = 0.41
Identities = 32/91 (35%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 8 GGPLGVRARCTLLRMSLSAGPG--VAGETRQ-----AARRWASGPSGGGGDAGATERRRD 60
GGP V A S PG G+ R+ AA WAS S RRR
Sbjct: 145 GGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWAS--SATAWRLPQPRRRRR 202
Query: 61 TRCGLRPRCR---PPMTEGFWGGAGGSGQEA 88
C RCR PPM GG GG+G A
Sbjct: 203 PTCPCCSRCRELSPPMGPDLGGGGGGAGAGA 233
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 32.7 bits (73), Expect = 0.41
Identities = 25/67 (37%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 6 RAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGL 65
RAGG RA + GPG A +GP GGG A E R R G
Sbjct: 1362 RAGGKEAPRAAAGS-ELCRREGPGAAPAF--------AGPGGGGSGALEAEGRAGARAGP 1412
Query: 66 RPRCRPP 72
RP RPP
Sbjct: 1413 RPGPRPP 1419
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 32.7 bits (73), Expect = 0.41
Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 17/128 (13%)
Query: 188 RYPAARGSIHQVQK--QVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRWP---- 241
R PAAR +HQ+ + Q+ + + +H H H G A A AP A + S P
Sbjct: 103 REPAARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCAAAAAAGAP-AGGAGALSELPGCAA 161
Query: 242 ------SEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEAS---GGALQMSK 292
+ +R L P GP P A + DP P+ S G A +
Sbjct: 162 LQPPHGAPHRGQPLEPLQPGPAPLPLPLPP-PAPAALCPRDPRAPAACSAPPGAAPPAAA 220
Query: 293 WLPAAAPA 300
P A+PA
Sbjct: 221 ASPPASPA 228
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.3 bits (72), Expect = 0.53
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87
PG AG + GP+G G GA R +T PP GF G G GQ
Sbjct: 794 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGET--------GPPGPAGFAGPPGADGQP 845
Query: 88 AA 89
A
Sbjct: 846 GA 847
Score = 30.0 bits (66), Expect = 2.6
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGG 83
PG GE +A ++ +G G G +GA + T G R PP GF G AG
Sbjct: 845 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 904
Query: 84 SG 85
G
Sbjct: 905 VG 906
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.3 bits (72), Expect = 0.53
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87
PG AG + GP+G G GA R +T PP GF G G GQ
Sbjct: 725 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGET--------GPPGPAGFAGPPGADGQP 776
Query: 88 AA 89
A
Sbjct: 777 GA 778
Score = 30.0 bits (66), Expect = 2.6
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGG 83
PG GE +A ++ +G G G +GA + T G R PP GF G AG
Sbjct: 776 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 835
Query: 84 SG 85
G
Sbjct: 836 VG 837
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 31.6 bits (70), Expect = 0.91
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 224 WNASAPLLNRASSASRWPSEYRKPG-LAPGTLGPESTPSSAASWEAAIGVTRADPTWPSE 282
WN + N S+ S PS G + TL P TPS A S EA+ G T+P
Sbjct: 1190 WN----MPNLPSTTSLTPSNIPTSGAIGKSTLVPLDTPSPATSLEASEGGLPTLSTYPES 1245
Query: 283 ASGGALQMSKWLPAAAPATL 302
+ ++ + + +P+T+
Sbjct: 1246 TNTPSIHLGAHASSESPSTI 1265
Score = 28.9 bits (63), Expect = 5.9
Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 22/195 (11%)
Query: 79 GGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPR--------CRRASLHVKLGDPEMTLS 130
G A SG ++ ++ + S +SP + +R R+ ++ V L +TLS
Sbjct: 3020 GQAARSGSSSSPISLSTEKETSFLSPTASTSRKTSLFLGPSMARQPNILVHLQTSALTLS 3079
Query: 131 PSSSTNFSRTVP--LTCRRQRLWKLQPRTTWTSTFWVHPQLLGQFQEGRQLLAVQEQVDR 188
P+S+ N S+ P LT Q + + + T T T P + LL V +
Sbjct: 3080 PTSTLNMSQEEPPELT-SSQTIAEEEGTTAETQTLTFTPS-----ETPTSLLPVSSPTE- 3132
Query: 189 YPAARGSIHQVQKQVWVSE-DVHDHGHQLGMGRGAVWNASAPLLNRASSASRWPSEYRKP 247
P AR + + W S V + G + A S WP+ +
Sbjct: 3133 -PTAR---RKSSPETWASSISVPAKTSLVETTDGTLVTTIKMSSQAAQGNSTWPAPAEET 3188
Query: 248 GLAPGTLGPESTPSS 262
G +P P S S
Sbjct: 3189 GSSPAGTSPGSPEMS 3203
>gi|239757949 PREDICTED: similar to CTL-recognized antigen on
melanoma (CAMEL) [Homo sapiens]
Length = 154
Score = 31.6 bits (70), Expect = 0.91
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQ--AARRWASGPSGGGGDAGATERRRD-T 61
GR P GVR LLR A G G T + + S G GG+ GA RR+
Sbjct: 42 GREEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQ 101
Query: 62 RCGLRPRCR 70
G R R R
Sbjct: 102 EVGGRARSR 110
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 31.6 bits (70), Expect = 0.91
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 12 GVRARCTLLRMSLSAGPGVAGET--RQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC 69
G R C L + AGP G R+AAR+W G G + R G+ PR
Sbjct: 259 GRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 318
Query: 70 RPPMT 74
R T
Sbjct: 319 RGSST 323
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 31.6 bits (70), Expect = 0.91
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 12 GVRARCTLLRMSLSAGPGVAGET--RQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC 69
G R C L + AGP G R+AAR+W G G + R G+ PR
Sbjct: 353 GRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 412
Query: 70 RPPMT 74
R T
Sbjct: 413 RGSST 417
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 31.6 bits (70), Expect = 0.91
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 12 GVRARCTLLRMSLSAGPGVAGET--RQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC 69
G R C L + AGP G R+AAR+W G G + R G+ PR
Sbjct: 353 GRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 412
Query: 70 RPPMT 74
R T
Sbjct: 413 RGSST 417
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 31.6 bits (70), Expect = 0.91
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 12 GVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDA--------------GATER 57
G RC L S AGP G QA R W+ + GG A G T R
Sbjct: 1856 GALPRCRTL--SAGAGPRGGGACLQA-RTWSVDLAARGGGAYSHCRSLSGVGAGGGPTPR 1912
Query: 58 RRDTRCGLR-PRCRPPMTEGFWGGAGGSG 85
R G+R PR P + G +G A G G
Sbjct: 1913 GRRFSAGMRGPRPNPAIMRGRYGVAAGRG 1941
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 31.2 bits (69), Expect = 1.2
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 5 GRAG--GPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTR 62
GR G GP G R + + M G AGE +A R GP G G AG +D
Sbjct: 563 GRPGPPGPPGARGQAGV--MGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG-----KDGE 615
Query: 63 CGLRPRCRPPMTEGFWGGAGGSG 85
G + P G G G +G
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAG 638
Score = 30.8 bits (68), Expect = 1.5
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 7 AGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTR---- 62
A GP+G + + AGP AG R +GP G GD G T + D
Sbjct: 1053 APGPVGPAGKSGDRGETGPAGP--AGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGH 1110
Query: 63 ---CGLRPRCRPPMTEGFWGGAGGSG 85
GL+ PP + G G +G SG
Sbjct: 1111 RGFSGLQGPPGPPGSPGEQGPSGASG 1136
Score = 30.4 bits (67), Expect = 2.0
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGG 83
PG GE A + +GP G G AG + G R PP GF G AG
Sbjct: 823 PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR 882
Query: 84 SG 85
G
Sbjct: 883 VG 884
Score = 30.0 bits (66), Expect = 2.6
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87
PG AG SGP+G G GA G R PP GF G G GQ
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAP--------GDRGEPGPPGPAGFAGPPGADGQP 823
Query: 88 AA 89
A
Sbjct: 824 GA 825
Score = 28.9 bits (63), Expect = 5.9
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 25 SAGPGVAGETRQAARRWASGPSGGG---------GDAGATERRRDTRCGLRPRCRPPMTE 75
+ PG+AG R SGP G G G+ GA + DT G + P +
Sbjct: 400 NGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDT--GAKGEPGPVGVQ 457
Query: 76 GFWGGAGGSGQEAA 89
G G AG G+ A
Sbjct: 458 GPPGPAGEEGKRGA 471
Score = 28.5 bits (62), Expect = 7.7
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSG 85
PG GE + +GP G G AGA +D GL PP G G AG G
Sbjct: 1123 PGSPGEQGPSGASGPAGPRGPPGSAGAP--GKDGLNGLPGPIGPPGPRGRTGDAGPVG 1178
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 31.2 bits (69), Expect = 1.2
Identities = 39/132 (29%), Positives = 44/132 (33%), Gaps = 14/132 (10%)
Query: 29 GVAGETRQAARRWASGPSGGGGD--AGATERRRDTRCGLRPRCRPPMTE-GFWGGAGGSG 85
G + AR A GP GG G GA+E G RPP E FW G G
Sbjct: 333 GKKDDKASGARNSAKGPEGGEGAECGGASEGGEGQNGGDAAPARPPAGEPRFWCPECGKG 392
Query: 86 QEAAYSVRNSRLKASTISPVSRVTRPR--------CRRASLHVKLGDPEMTLSPSSSTNF 137
+R + S P V R R A +H G P P F
Sbjct: 393 FRRRAHLRQHGVTHSGARPFQCVRCQREFKRLADLARHAQVHA--GGPAPHPCPRCPRRF 450
Query: 138 SRTVPLTCRRQR 149
SR L R QR
Sbjct: 451 SRAYSL-LRHQR 461
>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
Length = 1950
Score = 30.8 bits (68), Expect = 1.5
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCG 64
G AG V + S++A PG + + ++++ +GPS GG GAT + G
Sbjct: 1630 GEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPS-VGGKTGATSSEATSSEG 1688
Query: 65 LRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRP 111
+ +T G GS E ++ + SP ++TRP
Sbjct: 1689 M-----SGVTGQSLGSTAGSDSEI-----TAKTSFTGSSPPGKLTRP 1725
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 30.8 bits (68), Expect = 1.5
Identities = 36/121 (29%), Positives = 44/121 (36%), Gaps = 24/121 (19%)
Query: 42 ASGPSGGGGDAGA----TERRR------------DTRC--GLRPRCRPPMTEGFWGGAGG 83
A G GG G AGA +ER DTR G RPR P + WG AGG
Sbjct: 155 AGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGG 214
Query: 84 SGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASL--HVKLGDPEMTLSPSSSTNFSRTV 141
R + +S R + P RAS + P PSS+ + R
Sbjct: 215 LRPRGKRPARGKKRPSSQ----RRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRA 270
Query: 142 P 142
P
Sbjct: 271 P 271
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 30.8 bits (68), Expect = 1.5
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCG 64
G AG V + S++A PG + + ++++ +GPS GG GAT + G
Sbjct: 1814 GEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPS-VGGKTGATSSEATSSEG 1872
Query: 65 LRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRP 111
+ +T G GS E ++ + SP ++TRP
Sbjct: 1873 M-----SGVTGQSLGSTAGSDSEI-----TAKTSFTGSSPPGKLTRP 1909
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 30.8 bits (68), Expect = 1.5
Identities = 36/121 (29%), Positives = 44/121 (36%), Gaps = 24/121 (19%)
Query: 42 ASGPSGGGGDAGA----TERRR------------DTRC--GLRPRCRPPMTEGFWGGAGG 83
A G GG G AGA +ER DTR G RPR P + WG AGG
Sbjct: 155 AGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGG 214
Query: 84 SGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASL--HVKLGDPEMTLSPSSSTNFSRTV 141
R + +S R + P RAS + P PSS+ + R
Sbjct: 215 LRPRGKRPARGKKRPSSQ----RRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRA 270
Query: 142 P 142
P
Sbjct: 271 P 271
>gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
Length = 276
Score = 30.8 bits (68), Expect = 1.5
Identities = 30/112 (26%), Positives = 38/112 (33%), Gaps = 28/112 (25%)
Query: 19 LLRMSLSAGPGVAGETRQAARRWASGPSGG------------------GGDAGATERRRD 60
LL + GP +AG R RR G GG G G + R
Sbjct: 9 LLDPTTGTGPRIAGGVRFWRRRLGGGQDGGEIIFLHLGGRRGGEGRREAGGGGGRKSREG 68
Query: 61 TRCGLR-PRCRPPMTEGFWGGAGGSGQEAAYSV---------RNSRLKASTI 102
C R RC P G GG G Q+ V R+ RL++S +
Sbjct: 69 AACARRLIRCPSPAPPGGAGGLGEGRQDGGGEVGRAGRRCCRRHRRLRSSRL 120
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 30.8 bits (68), Expect = 1.5
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCG 64
G AG V + S++A PG + + ++++ +GPS GG GAT + G
Sbjct: 1814 GEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPS-VGGKTGATSSEATSSEG 1872
Query: 65 LRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRP 111
+ +T G GS E ++ + SP ++TRP
Sbjct: 1873 M-----SGVTGQSLGSTAGSDSEI-----TAKTSFTGSSPPGKLTRP 1909
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,017,298
Number of Sequences: 37866
Number of extensions: 714354
Number of successful extensions: 4205
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 3936
Number of HSP's gapped (non-prelim): 392
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.