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Search of human proteins with 239757119
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757119 PREDICTED: hypothetical protein [Homo sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757119 PREDICTED: hypothetical protein [Homo sapiens] 174 2e-44
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 30 0.54
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 30 0.54
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 30 0.54
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 28 1.2
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 28 1.2
gi|81174549 hypothetical protein LOC84792 [Homo sapiens] 28 1.2
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 28 1.2
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 27 2.7
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 27 2.7
gi|21361682 Tax1 (human T-cell leukemia virus type I) binding pr... 27 3.5
gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s... 27 3.5
gi|14149724 mesoderm posterior 1 [Homo sapiens] 27 3.5
gi|150170699 kinesin family member 26A [Homo sapiens] 27 3.5
gi|47174859 tripartite motif-containing 46 [Homo sapiens] 27 3.5
gi|83367077 mucin 16 [Homo sapiens] 27 4.6
gi|239756475 PREDICTED: similar to hCG2045457 [Homo sapiens] 26 6.0
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 26 6.0
gi|113424170 PREDICTED: similar to hCG28707 [Homo sapiens] 26 6.0
gi|123701326 zinc finger protein 831 [Homo sapiens] 26 6.0
gi|46370073 GRB2-associated binding protein 1 isoform b [Homo sa... 26 7.8
gi|46370071 GRB2-associated binding protein 1 isoform a [Homo sa... 26 7.8
gi|169211489 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|32189394 mitochondrial ATP synthase beta subunit precursor [H... 26 7.8
>gi|239757119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 82
Score = 174 bits (440), Expect = 2e-44
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MATLPHQGVCSYGSPRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGL 60
MATLPHQGVCSYGSPRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGL
Sbjct: 1 MATLPHQGVCSYGSPRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGL 60
Query: 61 WGHGADADGIPSPAATWASVTR 82
WGHGADADGIPSPAATWASVTR
Sbjct: 61 WGHGADADGIPSPAATWASVTR 82
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 7 QGVCSYGSPRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGAD 66
+G CS G+P L P S P + S+ G++ + SR G+RGL G G+
Sbjct: 270 RGHCSRGAPALAPPKLSPPFPCLAQ-----SASRAAGARRALSASR---GRRGLLGSGSL 321
Query: 67 ADGIP 71
A +P
Sbjct: 322 ALPLP 326
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 7 QGVCSYGSPRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGAD 66
+G CS G+P L P S P + S+ G++ + SR G+RGL G G+
Sbjct: 270 RGHCSRGAPALAPPKLSPPFPCLAQ-----SASRAAGARRALSASR---GRRGLLGSGSL 321
Query: 67 ADGIP 71
A +P
Sbjct: 322 ALPLP 326
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 7 QGVCSYGSPRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGAD 66
+G CS G+P L P S P + S+ G++ + SR G+RGL G G+
Sbjct: 270 RGHCSRGAPALAPPKLSPPFPCLAQ-----SASRAAGARRALSASR---GRRGLLGSGSL 321
Query: 67 ADGIP 71
A +P
Sbjct: 322 ALPLP 326
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 15 PRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGADADGIPSPA 74
PRL + P++A P ++ R + G + R + G+ G G P PA
Sbjct: 269 PRLLSMPSAAARPCGAALPRSGFSGRPRG-RGGAAAGRGSRGEHPACGVGLARGTAPQPA 327
Query: 75 ATWASVTR 82
+TWA R
Sbjct: 328 STWALAAR 335
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 15 PRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGADADGIPSPA 74
PRL + P++A P ++ R + G + R + G+ G G P PA
Sbjct: 269 PRLLSMPSAAARPCGAALPRSGFSGRPRG-RGGAAAGRGSRGEHPACGVGLARGTAPQPA 327
Query: 75 ATWASVTR 82
+TWA R
Sbjct: 328 STWALAAR 335
>gi|81174549 hypothetical protein LOC84792 [Homo sapiens]
Length = 259
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 2 ATLPHQGVCSYGSPRLQAPPTSATLPDTVSIGRKPTRS--QQLGSQEEMVC 50
AT H+G C G PR+ P +P+ S P + + LGS+ E C
Sbjct: 137 ATDGHRGQCPKGEPRVSRLPRHQKVPEMGSFQDDPPSAFPKGLGSELEPAC 187
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 28.5 bits (62), Expect = 1.2
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 2 ATLPHQGV-CSYGSPRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGL 60
A P GV CSY PR Q P SA G P R G++ + R + G
Sbjct: 93 AGAPQPGVACSYLGPRPQRTPCSAQSRPGWCAG--PRRRHAPGTEPHVAPGRAPPPRAGA 150
Query: 61 WGHGADADGIPS---PAATW 77
G PS PAATW
Sbjct: 151 SPGSRLLPGSPSLLLPAATW 170
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 18 QAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGADADG 69
+A TSA P S +P+ ++ + C AGG G+ HGA A G
Sbjct: 242 RASATSAPRPTAPSSVAQPSSARS--QRRRAPCPHRAGGADGVGSHGARAPG 291
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 18 QAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGADADG 69
+A TSA P S +P+ ++ + C AGG G+ HGA A G
Sbjct: 242 RASATSAPRPTAPSSVAQPSSARS--QRRRAPCPHRAGGADGVGSHGARAPG 291
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 18 QAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPA 54
+ P LP+ VS G KP + ++ GSQ + + PA
Sbjct: 583 EVPSCKQELPEPVSSGGKPQKGKRQGSQAKKSEASPA 619
>gi|21361682 Tax1 (human T-cell leukemia virus type I) binding
protein 1 isoform a [Homo sapiens]
Length = 789
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 7 QGVCSYGSP----RLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPA 54
Q V YG+P + A PD + R P R G ++ +VCS+PA
Sbjct: 630 QPVLQYGNPYASQETRDGADGAFYPDEIQ--RPPVRVPSWGLEDNVVCSQPA 679
>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
Length = 320
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 13/48 (27%)
Query: 21 PTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGADAD 68
PT+A P S+ + P QQ Q E G+W HGADAD
Sbjct: 257 PTAAITPIAHSVPQPPPLLQQ--QQRE-----------GVWRHGADAD 291
>gi|14149724 mesoderm posterior 1 [Homo sapiens]
Length = 268
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 11 SYGSPRLQAPPTSATLPDTV------SIGRKPTRSQQLGSQEEMVCS 51
S+GS +P S P T+ S+GR+ RS +LGS + S
Sbjct: 42 SWGSTPADSPVASPARPGTLRDPRAPSVGRRGARSSRLGSGQRQSAS 88
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 18 QAPPTSATLPDTVSIGRKPTRSQQL----GSQEEMVCS---RPAGGKRGLWGHGADADGI 70
+ PPT LP S P R Q+ GS V S PA G+ L+ H + G
Sbjct: 1601 ERPPTGPALPSPYSKVTAPRRPQRYSSGHGSDNSSVLSGELPPAMGRTALFHHSGGSSGY 1660
Query: 71 PS 72
S
Sbjct: 1661 ES 1662
>gi|47174859 tripartite motif-containing 46 [Homo sapiens]
Length = 759
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 50 CSRPAGGKRGLWGHGADADGIP-SPAAT 76
C+R G++G GHG D P SPA+T
Sbjct: 56 CAREVLGQQGYIGHGGDPSSEPTSPAST 83
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 14 SPRLQAPPTSATLPDTVSIGRKPTRS 39
SP + +PP S+TLP T+ P S
Sbjct: 6808 SPAMTSPPVSSTLPKTIHTTPSPMTS 6833
>gi|239756475 PREDICTED: similar to hCG2045457 [Homo sapiens]
Length = 337
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 1 MATLPHQGVCSYGSPRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGL 60
+ATL V PRL TL ++GR Q LG+ + S+ G GL
Sbjct: 198 IATLERHEVQMKAPPRLSRAIADVTLESKTALGRPVINRQLLGA----LLSKGREGLPGL 253
Query: 61 WGHG 64
G G
Sbjct: 254 EGEG 257
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 36 PTRSQQLGSQEEMVCSRPA--------GGKRGLWGHGADADGIPSPAATWA 78
PTR Q+L + C R A GGK WG G P P A A
Sbjct: 70 PTRDQELRAGSS--CGRAARGFPEPGRGGKTQKWGGGTGTPQSPGPCAPQA 118
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 2 ATLPHQGVCSYGSPRLQAPPTSATLP 27
AT P Q S +P +QAPP+ T+P
Sbjct: 362 ATPPSQAPPSMTTPPMQAPPSLQTIP 387
>gi|113424170 PREDICTED: similar to hCG28707 [Homo sapiens]
Length = 486
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 6 HQGVCSYGSPRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGA 65
H + S G P P LP S+ R + ++GSQ + P G WG A
Sbjct: 11 HSPLQSKGKPG----PRKEQLPARGSLSRGVLGAFEVGSQGVEAAASPNGQYGPSWGLAA 66
Query: 66 DADGIPSPAAT 76
+ P+ AT
Sbjct: 67 EESVCPTNVAT 77
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 26.2 bits (56), Expect = 6.0
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 9 VCSYGSPRLQAPPTSATL--PDTVSIGRKPTRSQQLGSQEEMVCSRPAGGKRG--LWGHG 64
+CS G P +A + L P + S P+ + E+ CSRP G++G L G
Sbjct: 967 LCSSGWPEERASFVGSGLGTPLSPSPASGPSPGEADSILEDPSCSRPQDGRKGAQLGGDK 1026
Query: 65 ADADGIPSPAA 75
D PAA
Sbjct: 1027 GDRMATSRPAA 1037
>gi|46370073 GRB2-associated binding protein 1 isoform b [Homo
sapiens]
Length = 694
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 15 PRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEE 47
P QA +SATLP + P + LG QE+
Sbjct: 147 PSTQADSSSATLPPPYQLINVPPHLETLGIQED 179
>gi|46370071 GRB2-associated binding protein 1 isoform a [Homo
sapiens]
Length = 724
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 15 PRLQAPPTSATLPDTVSIGRKPTRSQQLGSQEE 47
P QA +SATLP + P + LG QE+
Sbjct: 147 PSTQADSSSATLPPPYQLINVPPHLETLGIQED 179
>gi|169211489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 13 GSPRLQAPPTSATLPDTVS-----IGRKPTRSQQLGSQEEMVCSRPAGGKR 58
G P PP P V +GR P SQQ + E+ R A G R
Sbjct: 119 GHPEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEATPTELPGERCAQGGR 169
>gi|32189394 mitochondrial ATP synthase beta subunit precursor [Homo
sapiens]
Length = 529
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 31 SIGRKPTRSQQLGSQEEMVCSRPAGGKRGLWGHGADADGI--PSPAATWA 78
++G +PT + +G+ +E + + G + AD + P+PA T+A
Sbjct: 328 AVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFA 377
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,213,084
Number of Sequences: 37866
Number of extensions: 188489
Number of successful extensions: 620
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 39
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.