Guide to the Human Genome
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Name: TAX1BP1 Sequence: fasta or formatted (789aa) NCBI GI: 21361682
Description:

Tax1 (human T-cell leukemia virus type I) binding protein 1 isoform a

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [747aa] Tax1 (human T-cell leukemia virus type I) binding protein 1 isofo...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         48           2
 C cysteine            2.4         19           1
 D aspartate           6.2         49           2
 E glutamate          11.4         90           2
 F phenylalanine       3.9         31           1
 G glycine             3.2         25           1
 H histidine           2.9         23           1
 I isoleucine          2.0         16           1
 K lysine              9.8         77           2
 L leucine             9.1         72           2
 M methionine          2.0         16           1
 N asparagine          4.9         39           4
 P proline             4.2         33           2
 Q glutamine           6.7         53           2
 R arginine            3.7         29           2
 S serine              5.6         44           2
 T threonine           6.0         47           2
 V valine              6.5         51           2
 W tryptophan          0.8          6           1
 Y tyrosine            2.7         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Tax1 (human T-cell leukemia virus type I) binding pr... 
TAX1BP1               0.932   Tax1 (human T-cell leukemia virus type I) binding p...
CALCOCO1              0.159   coiled-coil transcriptional coactivator isoform 1 [H...
CALCOCO1              0.101   coiled-coil transcriptional coactivator isoform 2 [...
CALCOCO2              0.086   calcium binding and coiled-coil domain 2 
CENPF                 0.044   centromere protein F 
AKAP9                 0.042   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.042   A-kinase anchor protein 9 isoform 3 
SYCP1                 0.041   synaptonemal complex protein 1 
UACA                  0.040   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.040   uveal autoantigen with coiled-coil domains and ankyr...
CENPE                 0.039   centromere protein E 
GOLGB1                0.039   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH4                  0.037   myosin, heavy polypeptide 4, skeletal muscle 
GOLGA4                0.037   golgi autoantigen, golgin subfamily a, 4 
C14orf145             0.037   hypothetical protein LOC145508 
MYH9                  0.037   myosin, heavy polypeptide 9, non-muscle 
MYH3                  0.037   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH13                 0.037   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CCDC147               0.036   coiled-coil domain containing 147 
MYH8                  0.036   myosin, heavy chain 8, skeletal muscle, perinatal [...
ERC1                  0.035   RAB6-interacting protein 2 isoform epsilon 
DSP                   0.035   desmoplakin isoform I 
ROCK2                 0.034   Rho-associated, coiled-coil containing protein kinas...
MYH2                  0.034   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.034   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH1                  0.034   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH6                  0.034   myosin heavy chain 6 
CCDC18                0.034   sarcoma antigen NY-SAR-41 
ERC1                  0.034   RAB6-interacting protein 2 isoform delta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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