Guide to the Human Genome
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Name: LOC100292950 Sequence: fasta or formatted (82aa) NCBI GI: 239757119
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0          9           2
 C cysteine            2.4          2           1
 D aspartate           3.7          3           1
 E glutamate           2.4          2           2
 F phenylalanine       0.0          0           0
 G glycine            12.2         10           2
 H histidine           2.4          2           1
 I isoleucine          2.4          2           1
 K lysine              2.4          2           1
 L leucine             6.1          5           1
 M methionine          2.4          2           1
 N asparagine          0.0          0           0
 P proline            11.0          9           2
 Q glutamine           6.1          5           2
 R arginine            7.3          6           1
 S serine             11.0          9           1
 T threonine           8.5          7           1
 V valine              4.9          4           1
 W tryptophan          2.4          2           1
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129571          0.034   PREDICTED: similar to hCG1646049 
LOC100129571          0.034   PREDICTED: similar to hCG1646049 
LOC100129571          0.034   PREDICTED: similar to hCG1646049 
LOC100290372          0.020   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.020   PREDICTED: hypothetical protein XP_002342652 
C7orf70               0.020   hypothetical protein LOC84792 
C17orf65              0.020   hypothetical protein LOC339201 
LOC100289661          0.013   PREDICTED: hypothetical protein 
LOC100289661          0.013   PREDICTED: hypothetical protein XP_002343723 
FLJ10404              0.013   hypothetical protein LOC54540 
TAX1BP1               0.013   Tax1 (human T-cell leukemia virus type I) binding pr...
BRUNOL5               0.013   bruno-like 5, RNA binding protein isoform 2 
MESP1                 0.013   mesoderm posterior 1 
KIF26A                0.013   kinesin family member 26A 
TRIM46                0.013   tripartite motif-containing 46 
MUC16                 0.013   mucin 16 
LOC100132944          0.007   PREDICTED: similar to hCG2045457 
LOC100292727          0.007   PREDICTED: hypothetical protein 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
LOC647166             0.007   PREDICTED: similar to hCG28707 
ZNF831                0.007   zinc finger protein 831 
GAB1                  0.007   GRB2-associated binding protein 1 isoform b 
GAB1                  0.007   GRB2-associated binding protein 1 isoform a 
LOC100131436          0.007   PREDICTED: hypothetical protein 
ATP5B                 0.007   mitochondrial ATP synthase beta subunit precursor [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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