Guide to the Human Genome
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Name: LOC100132944 Sequence: fasta or formatted (337aa) NCBI GI: 239756475
Description:

PREDICTED: similar to hCG2045457

Not currently referenced in the text

Other entries for this name:
alt prot {273aa} PREDICTED: similar to hCG2045457
alt prot {273aa} PREDICTED: similar to hCG2045457
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         35           2
 C cysteine            1.2          4           1
 D aspartate           4.7         16           1
 E glutamate           7.1         24           2
 F phenylalanine       1.8          6           1
 G glycine             8.3         28           2
 H histidine           2.7          9           1
 I isoleucine          2.7          9           1
 K lysine              4.2         14           1
 L leucine            11.3         38           2
 M methionine          1.5          5           1
 N asparagine          1.5          5           1
 P proline             6.5         22           2
 Q glutamine           3.9         13           2
 R arginine            9.5         32           2
 S serine              6.5         22           2
 T threonine           4.5         15           1
 V valine              8.3         28           2
 W tryptophan          3.6         12           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2045457 
LOC100132944          0.676   PREDICTED: similar to hCG2045457 
LOC100132944          0.676   PREDICTED: similar to hCG2045457 
LOC100292004          0.012   PREDICTED: hypothetical protein XP_002346201 
LOC100291083          0.012   PREDICTED: hypothetical protein XP_002347078 
LOC100287493          0.012   PREDICTED: hypothetical protein XP_002342943 
DHX57                 0.012   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
PLXNB3                0.008   plexin B3 isoform 1 
LOC100292655          0.008   PREDICTED: similar to armadillo repeat containing, ...
PLXNB3                0.008   plexin B3 isoform 2 
AZI1                  0.008   5-azacytidine induced 1 isoform b 
AZI1                  0.008   5-azacytidine induced 1 isoform a 
LOC100292758          0.006   PREDICTED: hypothetical protein 
LOC100131530          0.006   PREDICTED: hypothetical protein 
LOC728650             0.006   PREDICTED: hypothetical protein 
LOC100131530          0.006   PREDICTED: hypothetical protein 
LOC100131530          0.006   PREDICTED: hypothetical protein 
KLHDC7B               0.006   kelch domain containing 7B 
TUT1                  0.005   terminal uridylyl transferase 1, U6 snRNA-specific ...
LOC100292292          0.005   PREDICTED: hypothetical protein 
LOC100291384          0.005   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.005   PREDICTED: hypothetical protein XP_002343004 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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